Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009818

Physical Location & Seq

Genomic Coordinates Forward (+)

12007071 .. 12011007

Gene Structure 3937 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g18190.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGGCGGAGAAGACCTTCAAGTACGTCATCCTCGGCGGCGGAGTCTCTGCCGGATATGCAGCTCGGGAGTTTTCCAAGCAAGGAGTTAAGCCAGGCGAGCTAGCAGTCATCTCGAAAGAGGCGGTTGCTCCCTATGAACGTCCTGCACTCAGCAAGGCTTATCTCTTCCCTGAGTCTCCTGCTAGACTTCCAGGGTTTCACACCTGTGTTGGAAGCGGAGGAGAGAGATTGCTTCCTGATTGGTACAAAGAGAAAGGAATTGAGTTGATTCTTAGCACTGAAATTGTCATAGTAGATCTTGCCGGGAAGACTCTAGTTAGTGGAACTGGGGAAACCTTCAAGTTTCAGATTCTTATCATTGCAACTGGTTCAACTGTTGTAAGGTTGTCTGATTTTGGTGTGAAAGGAGCTGATGCTAAAAACATTTTCTACTTGAGAGAAATTGATGATGCTGATAAGCTCAATGACGCAATTAAAGCAAAAAAGAATGGGAAAGCTGTGATTGTTGGAGGAGGATACATTGGTCTTGAGCTTGGTGCAGCATTGAGAATTAACAATTTAGATGTTACTATGGTGTACCCTGAACCGTGGTGCATGCCTCGGCTTTTCACTTCTGGTATTGCTGCTTTCTATGAGGGTTATTATGCAAACAAAGGAGTTAAAATCATCAAGGGAACAGTTGCTTCTGGGTTTACCTCTGATTCAAATGGAGAGGTCAAGGAAGTGCATCTAAAAGATGGTAGAGTGCTTGAAGCTGACATTGTTGTTGTTGGTGTTGGGGGAAGGCCACTAACATCCTTGTTCAAGGGACAAGTTGAAGAGGAGAAAGGTGGAATTAAGACGGACACATTCTTTAAAACAAGTGTTCCTGATGTATATGCTGTGGGTGATGTTGCCACTTTCCCTTTGAAGTTGTACAATGAGCTCAGAAGAGTTGAGCATGTTGATCATGCACGCAAGTCTGCAGAGCAGGCCGTAAAGGCCATCAAGGCAAGTGAGGAGGGAAAGACAGTTGAGGTCTATGACTACCTTCCATACTTTTATTCTCGCTCCTTTGATCTGTCATGGCAATTCTATGGTGATAATGTTGGTGAGACCGTGCTCTTTGGAGACAACAATCCCACCTCACCAAAGCCCAAGTTCGGAACCTACTGGATTAAAGACGGCAAGGTGATCGGTGCATTTCTGGAGGCTGGCACTCCTGAGGAAAACCAGGCTATTGCCAAGGTTGCAAAGCTCCAACCTCCTGTTGAGAGTTTAGATCAGCTTGCGAAGGAAGGTCTTTCTTTTGCTAGTAAGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005829 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009753 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016491 GO:0016651 GO:0016655 GO:0016656 GO:0016999 GO:0017001 GO:0017144 GO:0031090 GO:0031903 GO:0031967 GO:0031975 GO:0042221 GO:0042579 GO:0042737 GO:0042743 GO:0042744 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043903 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050789 GO:0050896 GO:0051186 GO:0051187 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0065007 GO:0070887 GO:0072593 GO:0097237 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko01100 map00053 map01100

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

435

Amino Acids

47.12

Weight (kDa)

6.22

Isoelectric Point (pI)

28.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_2	PF07992	6 - 322	6.9e-59	Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox	PF00070	165 - 247	1.5e-13	Pyridine nucleotide-disulphide oxidoreductase
MDHAR3-like_C	PF21791	344 - 431	3.6e-43	Monodehydroascorbate reductase 3-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52880 AT3G52880
fragaria_vesca	FvH4_6g18190
malus_domestica	MD12G1021900.v1.1 MD14G1018700.v1.1
prunus_persica	Prupe.6G160700_v2.0.a1 Prupe.7G114800_v2.0.a1
pyrus_communis	pycom12g02040 pycom14g01790
rosa_chinensis	RchiOBHm_Chr3g0472521
rosa_laevigata	RLG00000024073
rosa_multiflora	Rmu_sc0003510.1_g000032 Rmu_sc0011581.1_g000005
rosa_roxburghii	Rroxscaffold_6G00408860
rosa_rugosa	Rorug03G0126200
rosa_samantha	Rh3AG178100 Rh3BG204000 Rh3CG194400 Rh3CG201500 Rh3DG170800
rosa_wichuraiana	Rw3G016350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	5, 36, 39, 122, 216
AfaI	GTAC	4 cut(s)	23, 245, 578, 917
AfiI	CCNNNNNNNGG	1 cut(s)	1142
AgsI	TTSAA	8 cut(s)	19, 340, 372, 705, 752, 805, 818, 910
AjnI	CCWGG	3 cut(s)	91, 190, 1212
AleI	CACNNNNGTG	1 cut(s)	204
Alw21I	GWGCWC	2 cut(s)	927, 1104
Alw26I	GTCTC	4 cut(s)	49, 180, 1088, 1104
Ama87I	CYCGRG	1 cut(s)	63
AoxI	GGCC	3 cut(s)	785, 972, 981
ApeKI	GCWGC	3 cut(s)	59, 539, 623
Asp700I	GAANNNNTTC	1 cut(s)	14
AsuC2I	CCSGG	1 cut(s)	304
AsuHPI	GGTGA	5 cut(s)	899, 1091, 1103, 1119, 1183
AsuNHI	GCTAGC	1 cut(s)	100
AvaI	CYCGRG	1 cut(s)	63
AxyI	CCTNAGG	1 cut(s)	1203
BaeI	ACNNNNGTAYC	2 cut(s)	508, 541
BanII	GRGCYC	1 cut(s)	927
BbsI	GAAGAC	2 cut(s)	17, 314
Bbv12I	GWGCWC	2 cut(s)	927, 1104
BbvI	GCAGC	3 cut(s)	71, 551, 610
BccI	CCATC	2 cut(s)	731, 992
BceAI	ACGGC	2 cut(s)	959, 1180
BcgI	CGANNNNNNTGC	4 cut(s)	93, 127, 1156, 1190
BciT130I	CCWGG	3 cut(s)	93, 192, 1214
BciVI	GTATCC	1 cut(s)	509
BclI	TGATCA	1 cut(s)	946
BcnI	CCSGG	1 cut(s)	304
BcoDI	GTCTC	4 cut(s)	49, 180, 1088, 1104
BfaI	CTAG	4 cut(s)	101, 183, 314, 1293
BfmI	CTRYAG	1 cut(s)	963
BfuI	GTATCC	1 cut(s)	509
BglI	GCCNNNNNGGC	2 cut(s)	980, 989
BglII	AGATCT	2 cut(s)	295, 1299
BisI	GCNGC	4 cut(s)	37, 60, 540, 624
BlsI	GCNGC	4 cut(s)	38, 61, 541, 625
Bme1390I	CCNGG	4 cut(s)	93, 192, 304, 1214
BmeT110I	CYCGRG	1 cut(s)	63
BmiI	GGNNCC	1 cut(s)	1147
BmrFI	CCNGG	4 cut(s)	93, 192, 304, 1214
BmrI	ACTGGG	1 cut(s)	336
BmsI	GCATC	3 cut(s)	403, 439, 736
BmtI	GCTAGC	1 cut(s)	104
BmuI	ACTGGG	1 cut(s)	336
BpiI	GAAGAC	2 cut(s)	17, 314
BpmI	CTGGAG	1 cut(s)	1208
BpuEI	CTTGAG	2 cut(s)	454, 548
BpuMI	CCSGG	1 cut(s)	304
BsaBI	GATNNNNATC	1 cut(s)	353
BsaI	GGTCTC	1 cut(s)	1088
BsaJI	CCNNGG	5 cut(s)	31, 191, 587, 599, 1224
Bsc4I	CCNNNNNNNGG	1 cut(s)	1142
Bse1I	ACTGG	3 cut(s)	331, 370, 1157
Bse21I	CCTNAGG	1 cut(s)	1203
Bse3DI	GCAATG	1 cut(s)	357
Bse8I	GATNNNNATC	1 cut(s)	353
BseBI	CCWGG	3 cut(s)	93, 192, 1214
BseDI	CCNNGG	5 cut(s)	31, 191, 587, 599, 1224
BseGI	GGATG	2 cut(s)	27, 794
BseJI	GATNNNNATC	1 cut(s)	353
BseLI	CCNNNNNNNGG	1 cut(s)	1142
BseMI	GCAATG	1 cut(s)	357
BseMII	CTCAG	4 cut(s)	162, 163, 940, 1194
BseNI	ACTGG	3 cut(s)	331, 370, 1157
BseRI	GAGGAG	4 cut(s)	234, 525, 836, 1013
BseXI	GCAGC	3 cut(s)	71, 551, 610
BsgI	GTGCAG	2 cut(s)	129, 558
BshFI	GGCC	3 cut(s)	787, 974, 983
BsiHKAI	GWGCWC	2 cut(s)	927, 1104
BsiHKCI	CYCGRG	1 cut(s)	63
BsiSI	CCGG	2 cut(s)	51, 303
BslFI	GGGAC	1 cut(s)	822
BslI	CCNNNNNNNGG	1 cut(s)	1142
BsmAI	GTCTC	4 cut(s)	49, 180, 1088, 1104
BsmFI	GGGAC	1 cut(s)	822
BsnI	GGCC	3 cut(s)	787, 974, 983
Bso31I	GGTCTC	1 cut(s)	1088
BsoBI	CYCGRG	1 cut(s)	63
Bsp1286I	GDGCHC	2 cut(s)	927, 1104
Bsp1407I	TGTACA	1 cut(s)	915
Bsp143I	GATC	6 cut(s)	295, 946, 1057, 1173, 1261, 1299
BspACI	CCGC	5 cut(s)	5, 36, 39, 122, 216
BspANI	GGCC	3 cut(s)	787, 974, 983
BspCNI	CTCAG	4 cut(s)	162, 163, 939, 1195
BspLI	GGNNCC	1 cut(s)	1147
BspMAI	CTGCAG	1 cut(s)	967
BspOI	GCTAGC	1 cut(s)	104
BspTNI	GGTCTC	1 cut(s)	1088
BsrDI	GCAATG	1 cut(s)	357
BsrGI	TGTACA	1 cut(s)	915
BsrI	ACTGG	3 cut(s)	331, 370, 1157
BssECI	CCNNGG	5 cut(s)	31, 191, 587, 599, 1224
BssMI	GATC	6 cut(s)	295, 946, 1057, 1173, 1261, 1299
BssT1I	CCWWGG	1 cut(s)	1224
Bst2UI	CCWGG	3 cut(s)	93, 192, 1214
Bst4CI	ACNGT	5 cut(s)	376, 588, 679, 1012, 1099
Bst6I	CTCTTC	3 cut(s)	170, 813, 925
BstAUI	TGTACA	1 cut(s)	915
BstC8I	GCNNGC	7 cut(s)	98, 102, 596, 955, 972, 1195, 1269
BstDEI	CTNAG	5 cut(s)	149, 171, 272, 926, 1203
BstDSI	CCRYGG	1 cut(s)	587
BstF5I	GGATG	2 cut(s)	27, 794
BstKTI	GATC	6 cut(s)	298, 949, 1060, 1176, 1264, 1302
BstMAI	GTCTC	4 cut(s)	49, 180, 1088, 1104
BstMBI	GATC	6 cut(s)	295, 946, 1057, 1173, 1261, 1299
BstMWI	GCNNNNNNNGC	7 cut(s)	56, 97, 476, 971, 980, 989, 1229
BstNI	CCWGG	3 cut(s)	93, 192, 1214
BstNSI	RCATGY	2 cut(s)	598, 944
BstSCI	CCNGG	4 cut(s)	91, 190, 302, 1212
BstSFI	CTRYAG	1 cut(s)	963
BstV1I	GCAGC	3 cut(s)	71, 551, 610
BstV2I	GAAGAC	2 cut(s)	17, 314
BstX2I	RGATCY	2 cut(s)	295, 1299
BstYI	RGATCY	2 cut(s)	295, 1299
Bsu36I	CCTNAGG	1 cut(s)	1203
BsuI	GTATCC	1 cut(s)	509
BsuRI	GGCC	3 cut(s)	787, 974, 983
BtgI	CCRYGG	1 cut(s)	587
BtsCI	GGATG	2 cut(s)	27, 794
BtsIMutI	CAGTG	1 cut(s)	276
Cac8I	GCNNGC	7 cut(s)	98, 102, 596, 955, 972, 1195, 1269
CseI	GACGC	1 cut(s)	476
Csp6I	GTAC	4 cut(s)	22, 244, 577, 916
CviAII	CATG	4 cut(s)	595, 941, 950, 1065
CviQI	GTAC	4 cut(s)	22, 244, 577, 916
DdeI	CTNAG	5 cut(s)	149, 171, 272, 926, 1203
DpnI	GATC	6 cut(s)	297, 948, 1059, 1175, 1263, 1301
DpnII	GATC	6 cut(s)	295, 946, 1057, 1173, 1261, 1299
DraI	TTTAAA	1 cut(s)	856
Eam1104I	CTCTTC	3 cut(s)	170, 813, 925
EarI	CTCTTC	3 cut(s)	170, 813, 925
EciI	GGCGGA	2 cut(s)	20, 54
Ecl136II	GAGCTC	1 cut(s)	925
Eco130I	CCWWGG	1 cut(s)	1224
Eco24I	GRGCYC	1 cut(s)	927
Eco31I	GGTCTC	1 cut(s)	1088
Eco53kI	GAGCTC	1 cut(s)	925
Eco81I	CCTNAGG	1 cut(s)	1203
Eco88I	CYCGRG	1 cut(s)	63
EcoICRI	GAGCTC	1 cut(s)	925
EcoRII	CCWGG	3 cut(s)	91, 190, 1212
EcoT14I	CCWWGG	1 cut(s)	1224
EcoT38I	GRGCYC	1 cut(s)	927
ErhI	CCWWGG	1 cut(s)	1224
FaeI	CATG	4 cut(s)	598, 944, 953, 1068
FaqI	GGGAC	1 cut(s)	822
FatI	CATG	4 cut(s)	594, 940, 949, 1064
FbaI	TGATCA	1 cut(s)	946
Fnu4HI	GCNGC	4 cut(s)	37, 60, 540, 624
FokI	GGATG	2 cut(s)	14, 781
FriOI	GRGCYC	1 cut(s)	927
Fsp4HI	GCNGC	4 cut(s)	37, 60, 540, 624
FspBI	CTAG	4 cut(s)	101, 183, 314, 1293
GluI	GCNGC	4 cut(s)	37, 60, 540, 624
GsuI	CTGGAG	1 cut(s)	1208
HaeIII	GGCC	3 cut(s)	787, 974, 983
HapII	CCGG	2 cut(s)	51, 303
HgaI	GACGC	1 cut(s)	476
Hin1II	CATG	4 cut(s)	598, 944, 953, 1068
HinfI	GANTC	6 cut(s)	42, 173, 268, 310, 349, 701
HpaII	CCGG	2 cut(s)	51, 303
HphI	GGTGA	5 cut(s)	899, 1091, 1103, 1119, 1183
Hpy166II	GTNNAC	2 cut(s)	577, 693
Hpy188I	TCNGA	5 cut(s)	348, 391, 700, 929, 1145
Hpy188III	TCNNGA	7 cut(s)	65, 112, 236, 527, 869, 1187, 1202
Hpy8I	GTNNAC	2 cut(s)	577, 693
HpyAV	CCTTC	6 cut(s)	25, 346, 777, 1040, 1267, 1271
HpyCH4III	ACNGT	5 cut(s)	376, 588, 679, 1012, 1099
HpyCH4IV	ACGT	2 cut(s)	24, 139
HpyF10VI	GCNNNNNNNGC	7 cut(s)	56, 97, 476, 971, 980, 989, 1229
HpyF3I	CTNAG	5 cut(s)	149, 171, 272, 926, 1203
HpySE526I	ACGT	2 cut(s)	24, 139
Hsp92II	CATG	4 cut(s)	598, 944, 953, 1068
Ksp22I	TGATCA	1 cut(s)	946
Kzo9I	GATC	6 cut(s)	295, 946, 1057, 1173, 1261, 1299
LmnI	GCTCC	4 cut(s)	133, 407, 1055, 1242
Lsp1109I	GCAGC	3 cut(s)	71, 551, 610
LweI	GCATC	3 cut(s)	403, 439, 736
MaeI	CTAG	4 cut(s)	101, 183, 314, 1293
MaeII	ACGT	2 cut(s)	24, 139
MaeIII	GTNAC	1 cut(s)	565
MalI	GATC	6 cut(s)	297, 948, 1059, 1175, 1263, 1301
MboI	GATC	6 cut(s)	295, 946, 1057, 1173, 1261, 1299
MboII	GAAGA	5 cut(s)	22, 157, 319, 830, 942
MflI	RGATCY	2 cut(s)	295, 1299
MhlI	GDGCHC	2 cut(s)	927, 1104
MluCI	AATT	8 cut(s)	258, 282, 441, 471, 549, 556, 834, 1070
MlyI	GAGTC	3 cut(s)	51, 182, 304
MmeI	TCCRAC	3 cut(s)	190, 487, 1264
MroXI	GAANNNNTTC	1 cut(s)	14
MseI	TTAA	7 cut(s)	87, 474, 552, 660, 837, 855, 1158
MslI	CAYNNNNRTG	1 cut(s)	204
MspI	CCGG	2 cut(s)	51, 303
MspR9I	CCNGG	4 cut(s)	93, 192, 304, 1214
MvaI	CCWGG	3 cut(s)	93, 192, 1214
MwoI	GCNNNNNNNGC	7 cut(s)	56, 97, 476, 971, 980, 989, 1229
NciI	CCSGG	1 cut(s)	304
NdeII	GATC	6 cut(s)	295, 946, 1057, 1173, 1261, 1299
NheI	GCTAGC	1 cut(s)	100
NlaIII	CATG	4 cut(s)	598, 944, 953, 1068
NlaIV	GGNNCC	1 cut(s)	1147
NmeAIII	GCCGAG	2 cut(s)	12, 580
NspI	RCATGY	2 cut(s)	598, 944
OliI	CACNNNNGTG	1 cut(s)	204
PaeI	GCATGC	1 cut(s)	598
PdmI	GAANNNNTTC	1 cut(s)	14
PfeI	GAWTC	3 cut(s)	268, 349, 701
PkrI	GCNGC	4 cut(s)	38, 61, 541, 625
PleI	GAGTC	3 cut(s)	50, 181, 304
PpsI	GAGTC	3 cut(s)	50, 181, 304
Psp124BI	GAGCTC	1 cut(s)	927
Psp6I	CCWGG	3 cut(s)	91, 190, 1212
PspGI	CCWGG	3 cut(s)	91, 190, 1212
PspN4I	GGNNCC	1 cut(s)	1147
PstI	CTGCAG	1 cut(s)	967
PsuI	RGATCY	2 cut(s)	295, 1299
RsaI	GTAC	4 cut(s)	23, 245, 578, 917
RsaNI	GTAC	4 cut(s)	22, 244, 577, 916
RseI	CAYNNNNRTG	1 cut(s)	204
SacI	GAGCTC	1 cut(s)	927
SaqAI	TTAA	7 cut(s)	87, 474, 552, 660, 837, 855, 1158
SatI	GCNGC	4 cut(s)	37, 60, 540, 624
Sau3AI	GATC	6 cut(s)	295, 946, 1057, 1173, 1261, 1299
SchI	GAGTC	3 cut(s)	51, 182, 304
ScrFI	CCNGG	4 cut(s)	93, 192, 304, 1214
SduI	GDGCHC	2 cut(s)	927, 1104
SfaNI	GCATC	3 cut(s)	403, 439, 736
SfcI	CTRYAG	1 cut(s)	963
SfiI	GGCCNNNNNGGCC	1 cut(s)	980
SmiMI	CAYNNNNRTG	1 cut(s)	204
SmlI	CTYRAG	2 cut(s)	433, 527
SmoI	CTYRAG	2 cut(s)	433, 527
SphI	GCATGC	1 cut(s)	598
Sse9I	AATT	8 cut(s)	258, 282, 441, 471, 549, 556, 834, 1070
SsiI	CCGC	5 cut(s)	5, 36, 39, 122, 216
SspMI	CTAG	4 cut(s)	101, 183, 314, 1293
SstI	GAGCTC	1 cut(s)	927
StyD4I	CCNGG	4 cut(s)	91, 190, 302, 1212
StyI	CCWWGG	1 cut(s)	1224
TaaI	ACNGT	5 cut(s)	376, 588, 679, 1012, 1099
TaiI	ACGT	2 cut(s)	27, 142
TaqI	TCGA	1 cut(s)	113
TasI	AATT	8 cut(s)	258, 282, 441, 471, 549, 556, 834, 1070
TatI	WGTACW	1 cut(s)	915
TauI	GCSGC	1 cut(s)	39
TfiI	GAWTC	3 cut(s)	268, 349, 701
Tru1I	TTAA	7 cut(s)	87, 474, 552, 660, 837, 855, 1158
Tru9I	TTAA	7 cut(s)	87, 474, 552, 660, 837, 855, 1158
TscAI	CASTG	1 cut(s)	283
TseI	GCWGC	3 cut(s)	59, 539, 623
TspDTI	ATGAA	1 cut(s)	150
TspGWI	ACGGA	1 cut(s)	857
TspRI	CASTG	1 cut(s)	283
XceI	RCATGY	2 cut(s)	598, 944
XmnI	GAANNNNTTC	1 cut(s)	14
XspI	CTAG	4 cut(s)	101, 183, 314, 1293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.