Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0009818

Physical Location & Seq

Genomic Coordinates Forward (+)

18164071 .. 18167264

Gene Structure 3194 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG201500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGGGGGAGAAGAGCTTCAAGTACGTGATCCTCGGTGGCGGAGTCTCGGCTGTAACTCCTGCTAGACTTCCAGGGTTTCACACCTGTGTTGGAAGTGGAGGAGAGAGATTGCTTCCTGATTGGTACAAAGTGAAAGGAATAGAGTTGATTCTTAGCACTGAAATAGTCAAAGTAGATCTTGCTGGGAAGACTCTTGTTAGTGGAACTGGGGAATCCTTCAAGTTTCAGATTCTTATCATCGCAACTGGTTCAACTGTTGTAAGATTGTCAGATTTTGGTGTGAAAGGAGCTGATGCTAAAAACATTTTCTACTTGAGAGAAATTGATGATGCTGATAAGCTTAATGATGCAATTAAAGCAAAAAAGAATGGGAAAGCTGTGATTGTTGGAGGAGGATACATTGGTCTTGAGCTTGGTGCAGCATTGAGAATTAACAATTTAGATGTTACTATGGTGTACCCTGAACCGTGGTGCATGCCTCGGCTTTTCACTTCTGATATTGCTGCCTTCTATGAGGGTTATTATGCAAACAAGGGAGTTAAAATCGTCAAGGGAACCGTTGCTGTTGGTTTTACCTCTGATTCAAATGGAGAGGTCAAGGAAGTGCATCTAAAGGATGGCACCGTGCTTGAAGCTGACATTGTTGTTGTTGGTGTTGGGGGAAGGCCACTAACATCCTTGTTCAAGGGACAAGTTGAAGAGGAGAAAGGTGGAGTTAAGACGGATACATTCTTTAAAACAAGTGTTCCTGATGTATATGCTGTGGGTGATGTTGCCACTTTCCCTTTGAAGTTGTACAATGAGAACAGAAGAGTCGAGCATGTTGACCATGCACGCAAATCTGCAGAGCAGGCCGTAAAGGCCATCAAGGCAAGCGAGGAGGGAAAGACAGTTGAGGTCTATGACTACCTTCCATTCTTCTATTCTCGCTCCTTTGATCTGTCATGGCAATTCTATGGTGATAATGTTGGTGAGACCGTGCTCTTCGGAGACAACAATCCCACCTCACCAAAGCCCAAGTTTGGAACCTACTGGATTAAAGACGGTAAGGTGGTCGGTGCATTTCTGGAGGCTGGCACTCCTGAGGAAAACCAGGCTATTGCCAAGGTTGCAAAGCTCCAACCTCCTGTTCAGAGTTTAGATCAGCTTGCAAAGGAAGGTCTTTCTTTTGCTAGTAAGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005829 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009753 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016491 GO:0016651 GO:0016655 GO:0016656 GO:0016999 GO:0017001 GO:0017144 GO:0031090 GO:0031903 GO:0031967 GO:0031975 GO:0042221 GO:0042579 GO:0042737 GO:0042743 GO:0042744 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043903 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050789 GO:0050896 GO:0051186 GO:0051187 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0065007 GO:0070887 GO:0072593 GO:0097237 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko01100 map00053 map01100

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

394

Amino Acids

42.68

Weight (kDa)

6.19

Isoelectric Point (pI)

25.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_2	PF07992	45 - 282	2.7e-50	Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox	PF00070	125 - 207	1.6e-14	Pyridine nucleotide-disulphide oxidoreductase
MDHAR3-like_C	PF21791	304 - 391	2.3e-43	Monodehydroascorbate reductase 3-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52880 AT3G52880
fragaria_vesca	FvH4_6g18190
malus_domestica	MD12G1021900.v1.1 MD14G1018700.v1.1
prunus_persica	Prupe.6G160700_v2.0.a1 Prupe.7G114800_v2.0.a1
pyrus_communis	pycom12g02040 pycom14g01790
rosa_chinensis	RchiOBHm_Chr3g0472521
rosa_laevigata	RLG00000024073
rosa_multiflora	Rmu_sc0003510.1_g000032 Rmu_sc0011581.1_g000005
rosa_roxburghii	Rroxscaffold_6G00408860
rosa_rugosa	Rorug03G0126200
rosa_samantha	Rh3AG178100 Rh3BG204000 Rh3CG194400 Rh3CG201500 Rh3DG170800
rosa_wichuraiana	Rw3G016350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	620
AciI	CCGC	1 cut(s)	39
AclWI	GGATC	1 cut(s)	22
AfaI	GTAC	4 cut(s)	23, 125, 458, 797
AfiI	CCNNNNNNNGG	1 cut(s)	1022
AgsI	TTSAA	8 cut(s)	19, 220, 252, 585, 632, 685, 698, 790
AjnI	CCWGG	2 cut(s)	70, 1092
AjuI	GAANNNNNNNTTGG	2 cut(s)	1113, 1145
AleI	CACNNNNGTG	1 cut(s)	84
AluBI	AGCT	8 cut(s)	15, 290, 340, 377, 412, 635, 1117, 1147
AluI	AGCT	8 cut(s)	15, 290, 340, 377, 412, 635, 1117, 1147
Alw21I	GWGCWC	1 cut(s)	984
Alw26I	GTCTC	3 cut(s)	49, 968, 984
AlwI	GGATC	1 cut(s)	22
AoxI	GGCC	3 cut(s)	665, 852, 861
ApeKI	GCWGC	2 cut(s)	419, 503
Asp700I	GAANNNNTTC	1 cut(s)	14
AsuHPI	GGTGA	4 cut(s)	779, 971, 983, 999
AxyI	CCTNAGG	1 cut(s)	1083
BaeI	ACNNNNGTAYC	2 cut(s)	388, 421
BanI	GGYRCC	1 cut(s)	620
BbsI	GAAGAC	1 cut(s)	194
Bbv12I	GWGCWC	1 cut(s)	984
BbvI	GCAGC	2 cut(s)	431, 490
BccI	CCATC	2 cut(s)	611, 872
BceAI	ACGGC	1 cut(s)	839
BciT130I	CCWGG	2 cut(s)	72, 1094
BciVI	GTATCC	2 cut(s)	389, 718
BcoDI	GTCTC	3 cut(s)	49, 968, 984
BfaI	CTAG	2 cut(s)	63, 1173
BfmI	CTRYAG	1 cut(s)	843
BfuI	GTATCC	2 cut(s)	389, 718
BglI	GCCNNNNNGGC	2 cut(s)	860, 869
BglII	AGATCT	2 cut(s)	175, 1179
BisI	GCNGC	2 cut(s)	420, 504
BlsI	GCNGC	2 cut(s)	421, 505
Bme1390I	CCNGG	2 cut(s)	72, 1094
BmiI	GGNNCC	3 cut(s)	556, 622, 1027
BmrFI	CCNGG	2 cut(s)	72, 1094
BmrI	ACTGGG	1 cut(s)	216
BmsI	GCATC	4 cut(s)	283, 319, 337, 616
BmuI	ACTGGG	1 cut(s)	216
BpiI	GAAGAC	1 cut(s)	194
BpmI	CTGGAG	1 cut(s)	1088
BpuEI	CTTGAG	2 cut(s)	334, 428
BsaAI	YACGTR	1 cut(s)	25
BsaBI	GATNNNNATC	1 cut(s)	233
BsaI	GGTCTC	1 cut(s)	968
BsaJI	CCNNGG	5 cut(s)	31, 71, 467, 479, 1104
Bsc4I	CCNNNNNNNGG	1 cut(s)	1022
Bse1I	ACTGG	3 cut(s)	211, 250, 1037
Bse21I	CCTNAGG	1 cut(s)	1083
Bse8I	GATNNNNATC	1 cut(s)	233
BseBI	CCWGG	2 cut(s)	72, 1094
BseDI	CCNNGG	5 cut(s)	31, 71, 467, 479, 1104
BseGI	GGATG	2 cut(s)	622, 674
BseJI	GATNNNNATC	1 cut(s)	233
BseLI	CCNNNNNNNGG	1 cut(s)	1022
BseMII	CTCAG	1 cut(s)	1074
BseNI	ACTGG	3 cut(s)	211, 250, 1037
BseRI	GAGGAG	4 cut(s)	114, 405, 716, 893
BseXI	GCAGC	2 cut(s)	431, 490
BseYI	CCCAGC	1 cut(s)	182
BsgI	GTGCAG	1 cut(s)	438
BshFI	GGCC	3 cut(s)	667, 854, 863
BshNI	GGYRCC	1 cut(s)	620
BsiHKAI	GWGCWC	1 cut(s)	984
BslFI	GGGAC	1 cut(s)	702
BslI	CCNNNNNNNGG	1 cut(s)	1022
BsmAI	GTCTC	3 cut(s)	49, 968, 984
BsmFI	GGGAC	1 cut(s)	702
BsnI	GGCC	3 cut(s)	667, 854, 863
Bso31I	GGTCTC	1 cut(s)	968
Bsp1286I	GDGCHC	1 cut(s)	984
Bsp1407I	TGTACA	1 cut(s)	795
Bsp143I	GATC	5 cut(s)	27, 175, 937, 1141, 1179
BspACI	CCGC	1 cut(s)	39
BspANI	GGCC	3 cut(s)	667, 854, 863
BspCNI	CTCAG	1 cut(s)	1075
BspLI	GGNNCC	3 cut(s)	556, 622, 1027
BspMAI	CTGCAG	1 cut(s)	847
BspPI	GGATC	1 cut(s)	22
BspQI	GCTCTTC	2 cut(s)	5, 989
BspT107I	GGYRCC	1 cut(s)	620
BspTNI	GGTCTC	1 cut(s)	968
BsrGI	TGTACA	1 cut(s)	795
BsrI	ACTGG	3 cut(s)	211, 250, 1037
BssECI	CCNNGG	5 cut(s)	31, 71, 467, 479, 1104
BssMI	GATC	5 cut(s)	27, 175, 937, 1141, 1179
BssT1I	CCWWGG	1 cut(s)	1104
Bst2UI	CCWGG	2 cut(s)	72, 1094
Bst4CI	ACNGT	7 cut(s)	256, 468, 559, 625, 892, 979, 1046
Bst6I	CTCTTC	4 cut(s)	5, 693, 805, 989
BstAUI	TGTACA	1 cut(s)	795
BstBAI	YACGTR	1 cut(s)	25
BstC8I	GCNNGC	6 cut(s)	476, 835, 852, 874, 1075, 1149
BstDEI	CTNAG	2 cut(s)	152, 1083
BstDSI	CCRYGG	1 cut(s)	467
BstF5I	GGATG	2 cut(s)	622, 674
BstKTI	GATC	5 cut(s)	30, 178, 940, 1144, 1182
BstMAI	GTCTC	3 cut(s)	49, 968, 984
BstMBI	GATC	5 cut(s)	27, 175, 937, 1141, 1179
BstMWI	GCNNNNNNNGC	5 cut(s)	356, 851, 860, 869, 1109
BstNI	CCWGG	2 cut(s)	72, 1094
BstNSI	RCATGY	2 cut(s)	478, 824
BstSCI	CCNGG	2 cut(s)	70, 1092
BstSFI	CTRYAG	1 cut(s)	843
BstV1I	GCAGC	2 cut(s)	431, 490
BstV2I	GAAGAC	1 cut(s)	194
BstX2I	RGATCY	2 cut(s)	175, 1179
BstYI	RGATCY	2 cut(s)	175, 1179
Bsu36I	CCTNAGG	1 cut(s)	1083
BsuI	GTATCC	2 cut(s)	389, 718
BsuRI	GGCC	3 cut(s)	667, 854, 863
BtgI	CCRYGG	1 cut(s)	467
BtgZI	GCGATG	1 cut(s)	223
BtsCI	GGATG	2 cut(s)	622, 674
BtsIMutI	CAGTG	1 cut(s)	156
Cac8I	GCNNGC	6 cut(s)	476, 835, 852, 874, 1075, 1149
Csp6I	GTAC	4 cut(s)	22, 124, 457, 796
CviAII	CATG	4 cut(s)	475, 821, 830, 945
CviQI	GTAC	4 cut(s)	22, 124, 457, 796
DdeI	CTNAG	2 cut(s)	152, 1083
DpnI	GATC	5 cut(s)	29, 177, 939, 1143, 1181
DpnII	GATC	5 cut(s)	27, 175, 937, 1141, 1179
DraI	TTTAAA	1 cut(s)	736
Eam1104I	CTCTTC	4 cut(s)	5, 693, 805, 989
EarI	CTCTTC	4 cut(s)	5, 693, 805, 989
EciI	GGCGGA	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	1104
Eco31I	GGTCTC	1 cut(s)	968
Eco81I	CCTNAGG	1 cut(s)	1083
EcoRII	CCWGG	2 cut(s)	70, 1092
EcoT14I	CCWWGG	1 cut(s)	1104
ErhI	CCWWGG	1 cut(s)	1104
FaeI	CATG	4 cut(s)	478, 824, 833, 948
FalI	AAGNNNNNCTT	2 cut(s)	162, 194
FaqI	GGGAC	1 cut(s)	702
FatI	CATG	4 cut(s)	474, 820, 829, 944
Fnu4HI	GCNGC	2 cut(s)	420, 504
FokI	GGATG	2 cut(s)	629, 661
Fsp4HI	GCNGC	2 cut(s)	420, 504
FspBI	CTAG	2 cut(s)	63, 1173
GluI	GCNGC	2 cut(s)	420, 504
GsaI	CCCAGC	1 cut(s)	186
GsuI	CTGGAG	1 cut(s)	1088
HaeIII	GGCC	3 cut(s)	667, 854, 863
Hin1II	CATG	4 cut(s)	478, 824, 833, 948
HincII	GTYRAC	1 cut(s)	826
HindII	GTYRAC	1 cut(s)	826
HindIII	AAGCTT	1 cut(s)	338
HinfI	GANTC	7 cut(s)	42, 148, 190, 212, 229, 581, 813
HphI	GGTGA	4 cut(s)	779, 971, 983, 999
Hpy166II	GTNNAC	2 cut(s)	457, 826
Hpy188I	TCNGA	6 cut(s)	228, 271, 496, 580, 989, 1134
Hpy188III	TCNNGA	5 cut(s)	116, 407, 749, 1067, 1082
Hpy8I	GTNNAC	2 cut(s)	457, 826
HpyAV	CCTTC	5 cut(s)	226, 517, 657, 920, 1151
HpyCH4III	ACNGT	7 cut(s)	256, 468, 559, 625, 892, 979, 1046
HpyCH4IV	ACGT	1 cut(s)	24
HpyF10VI	GCNNNNNNNGC	5 cut(s)	356, 851, 860, 869, 1109
HpyF3I	CTNAG	2 cut(s)	152, 1083
HpySE526I	ACGT	1 cut(s)	24
Hsp92II	CATG	4 cut(s)	478, 824, 833, 948
Kzo9I	GATC	5 cut(s)	27, 175, 937, 1141, 1179
LguI	GCTCTTC	2 cut(s)	5, 989
LmnI	GCTCC	3 cut(s)	287, 935, 1122
Lsp1109I	GCAGC	2 cut(s)	431, 490
LweI	GCATC	4 cut(s)	283, 319, 337, 616
MaeI	CTAG	2 cut(s)	63, 1173
MaeII	ACGT	1 cut(s)	24
MaeIII	GTNAC	2 cut(s)	52, 445
MalI	GATC	5 cut(s)	29, 177, 939, 1143, 1181
MboI	GATC	5 cut(s)	27, 175, 937, 1141, 1179
MboII	GAAGA	6 cut(s)	22, 199, 710, 822, 910, 976
MflI	RGATCY	2 cut(s)	175, 1179
MhlI	GDGCHC	1 cut(s)	984
MluCI	AATT	5 cut(s)	321, 351, 429, 436, 950
MlyI	GAGTC	3 cut(s)	51, 184, 822
MmeI	TCCRAC	3 cut(s)	70, 367, 1144
MroXI	GAANNNNTTC	1 cut(s)	14
MseI	TTAA	7 cut(s)	342, 354, 432, 540, 717, 735, 1038
MslI	CAYNNNNRTG	1 cut(s)	84
MspR9I	CCNGG	2 cut(s)	72, 1094
MvaI	CCWGG	2 cut(s)	72, 1094
MwoI	GCNNNNNNNGC	5 cut(s)	356, 851, 860, 869, 1109
NdeII	GATC	5 cut(s)	27, 175, 937, 1141, 1179
NlaIII	CATG	4 cut(s)	478, 824, 833, 948
NlaIV	GGNNCC	3 cut(s)	556, 622, 1027
NmeAIII	GCCGAG	2 cut(s)	26, 460
NspI	RCATGY	2 cut(s)	478, 824
OliI	CACNNNNGTG	1 cut(s)	84
PaeI	GCATGC	1 cut(s)	478
PciSI	GCTCTTC	2 cut(s)	5, 989
PdmI	GAANNNNTTC	1 cut(s)	14
PfeI	GAWTC	4 cut(s)	148, 212, 229, 581
PkrI	GCNGC	2 cut(s)	421, 505
PleI	GAGTC	3 cut(s)	50, 184, 821
PpsI	GAGTC	3 cut(s)	50, 184, 821
Ppu21I	YACGTR	1 cut(s)	25
Psp6I	CCWGG	2 cut(s)	70, 1092
PspFI	CCCAGC	1 cut(s)	182
PspGI	CCWGG	2 cut(s)	70, 1092
PspN4I	GGNNCC	3 cut(s)	556, 622, 1027
PstI	CTGCAG	1 cut(s)	847
PsuI	RGATCY	2 cut(s)	175, 1179
RsaI	GTAC	4 cut(s)	23, 125, 458, 797
RsaNI	GTAC	4 cut(s)	22, 124, 457, 796
RseI	CAYNNNNRTG	1 cut(s)	84
SapI	GCTCTTC	2 cut(s)	5, 989
SaqAI	TTAA	7 cut(s)	342, 354, 432, 540, 717, 735, 1038
SatI	GCNGC	2 cut(s)	420, 504
Sau3AI	GATC	5 cut(s)	27, 175, 937, 1141, 1179
SchI	GAGTC	3 cut(s)	51, 184, 822
ScrFI	CCNGG	2 cut(s)	72, 1094
SduI	GDGCHC	1 cut(s)	984
SfaNI	GCATC	4 cut(s)	283, 319, 337, 616
SfcI	CTRYAG	1 cut(s)	843
SfiI	GGCCNNNNNGGCC	1 cut(s)	860
SmiMI	CAYNNNNRTG	1 cut(s)	84
SmlI	CTYRAG	2 cut(s)	313, 407
SmoI	CTYRAG	2 cut(s)	313, 407
SphI	GCATGC	1 cut(s)	478
Sse9I	AATT	5 cut(s)	321, 351, 429, 436, 950
SsiI	CCGC	1 cut(s)	39
SspMI	CTAG	2 cut(s)	63, 1173
StyD4I	CCNGG	2 cut(s)	70, 1092
StyI	CCWWGG	1 cut(s)	1104
TaaI	ACNGT	7 cut(s)	256, 468, 559, 625, 892, 979, 1046
TaiI	ACGT	1 cut(s)	27
TaqI	TCGA	1 cut(s)	816
TasI	AATT	5 cut(s)	321, 351, 429, 436, 950
TatI	WGTACW	1 cut(s)	795
TfiI	GAWTC	4 cut(s)	148, 212, 229, 581
Tru1I	TTAA	7 cut(s)	342, 354, 432, 540, 717, 735, 1038
Tru9I	TTAA	7 cut(s)	342, 354, 432, 540, 717, 735, 1038
TscAI	CASTG	1 cut(s)	163
TseI	GCWGC	2 cut(s)	419, 503
TspGWI	ACGGA	1 cut(s)	737
TspRI	CASTG	1 cut(s)	163
XceI	RCATGY	2 cut(s)	478, 824
XmnI	GAANNNNTTC	1 cut(s)	14
XspI	CTAG	2 cut(s)	63, 1173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.