Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0009818

Physical Location & Seq

Genomic Coordinates Forward (+)

16640616 .. 16643809

Gene Structure 3194 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG178100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGGGGGAGAAGAGCTTCAAGTACGTGATCCTCGGTGGCGGAGTCTCGGCTGTTGCTCCCTATGAACGTCCTGCACTCAGCAAGGCTTATCTCTTCCCAGAGTCTCCTGCTAGACTTCCAGGGTTTCACACCTGTGTTGGAAGTGGAGGAGAGAGATTGCTTCCTGATTGGTACAAAGTGAAAGGAATAGAGTTGATTCTTAGCACTGAAATAGTCAAAGTAGATCTTGCTGGGAAGACTCTTGTTAGTGGAACTGGGGAATCCTTCAAGTTTCAGATTCTTATCATCGCAACTGGTTCAACTGTTGTAAGATTGTCAGATTTTGGTGTGAAAGGAGCTGATGCTAAAAACATTTTCTACTTGAGAGAAATTGATGATGCTGATAAGCTTAATGATGCAATTAAAGCAAAAAAGAATGGGAAAGCTGTGATTGTTGGAGGAGGATACATTGGTCTTGAGCTTGGTGCAGCATTGAGAATTAACAATTTAGATGTTACTATGGTGTACCCTGAACCGTGGTGCATGCCTCGGCTTTTCACTTCTGATATTGCTGCCTTCTATGAGGGTTATTATGCAAACAAGGGAGTTAAAATCGTCAAGGGAACCGTTGCTGTTGGTTTTACCTCTGATTCAAATGGAGAGGTCAAGGAAGTGCATCTAAAGGATGGCACCGTGCTTGAAGCTGACATTGTTGTTGTTGGTGTTGGGGGAAGGCCACTAACATCCTTGTTCAAGGGACAAGTTGAAGAGGAGAAAGGTGGAGTTAAGACGGATACATTCTTTAAAACAAGTGTTCCTGATGTATATGCTGTGGGTGATGTTGCCACTTTCCCTTTGAAGTTGTACAATGAGAACAGAAGAGTCGAGCATGTTGACCATGCACGCAAATCTGCAGAGCAGGCCGTAAAGGCCATCAAGGCAAGCGAGGAGGGAAAGACAGTTGAGGTCTATGACTACCTTCCATTCTTCTATTCTCGCTCCTTTGATCTGTCATGGCAATTCTATGGTGATAATGTTGGTGAGACCGTGCTCTTCGGAGACAACAATCCCACCTCACCAAAGCCCAAGTTTGGAACCTACTGGATTAAAGACGGTAAGGTGGTCGGTGCATTTCTGGAGGCTGGCACTCCTGAGGAAAACCAGGCTATTGCCAAGGTTGCAAAGCTCCAACCTCCTGTTCAGAGTTTAGATCAGCTTGCAAAGGAAGGTCTTTCTTTTGCTAGTAAGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005829 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009753 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016491 GO:0016651 GO:0016655 GO:0016656 GO:0016999 GO:0017001 GO:0017144 GO:0031090 GO:0031903 GO:0031967 GO:0031975 GO:0042221 GO:0042579 GO:0042737 GO:0042743 GO:0042744 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043903 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050789 GO:0050896 GO:0051186 GO:0051187 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0065007 GO:0070887 GO:0072593 GO:0097237 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko01100 map00053 map01100

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

410

Amino Acids

44.5

Weight (kDa)

6.2

Isoelectric Point (pI)

28.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_2	PF07992	12 - 298	1.5e-52	Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox	PF00070	141 - 223	1.7e-14	Pyridine nucleotide-disulphide oxidoreductase
MDHAR3-like_C	PF21791	320 - 407	2.5e-43	Monodehydroascorbate reductase 3-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52880 AT3G52880
fragaria_vesca	FvH4_6g18190
malus_domestica	MD12G1021900.v1.1 MD14G1018700.v1.1
prunus_persica	Prupe.6G160700_v2.0.a1 Prupe.7G114800_v2.0.a1
pyrus_communis	pycom12g02040 pycom14g01790
rosa_chinensis	RchiOBHm_Chr3g0472521
rosa_laevigata	RLG00000024073
rosa_multiflora	Rmu_sc0003510.1_g000032 Rmu_sc0011581.1_g000005
rosa_roxburghii	Rroxscaffold_6G00408860
rosa_rugosa	Rorug03G0126200
rosa_samantha	Rh3AG178100 Rh3BG204000 Rh3CG194400 Rh3CG201500 Rh3DG170800
rosa_wichuraiana	Rw3G016350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	668
AciI	CCGC	1 cut(s)	39
AclWI	GGATC	1 cut(s)	22
AfaI	GTAC	4 cut(s)	23, 173, 506, 845
AfiI	CCNNNNNNNGG	1 cut(s)	1070
AgsI	TTSAA	8 cut(s)	19, 268, 300, 633, 680, 733, 746, 838
AjnI	CCWGG	2 cut(s)	118, 1140
AjuI	GAANNNNNNNTTGG	2 cut(s)	1161, 1193
AleI	CACNNNNGTG	1 cut(s)	132
AluBI	AGCT	8 cut(s)	15, 338, 388, 425, 460, 683, 1165, 1195
AluI	AGCT	8 cut(s)	15, 338, 388, 425, 460, 683, 1165, 1195
Alw21I	GWGCWC	1 cut(s)	1032
Alw26I	GTCTC	4 cut(s)	49, 108, 1016, 1032
AlwI	GGATC	1 cut(s)	22
AoxI	GGCC	3 cut(s)	713, 900, 909
ApeKI	GCWGC	2 cut(s)	467, 551
Asp700I	GAANNNNTTC	1 cut(s)	14
AsuHPI	GGTGA	4 cut(s)	827, 1019, 1031, 1047
AxyI	CCTNAGG	1 cut(s)	1131
BaeI	ACNNNNGTAYC	2 cut(s)	436, 469
BanI	GGYRCC	1 cut(s)	668
BbsI	GAAGAC	1 cut(s)	242
Bbv12I	GWGCWC	1 cut(s)	1032
BbvI	GCAGC	2 cut(s)	479, 538
BccI	CCATC	2 cut(s)	659, 920
BceAI	ACGGC	1 cut(s)	887
BciT130I	CCWGG	2 cut(s)	120, 1142
BciVI	GTATCC	2 cut(s)	437, 766
BcoDI	GTCTC	4 cut(s)	49, 108, 1016, 1032
BfaI	CTAG	2 cut(s)	111, 1221
BfmI	CTRYAG	1 cut(s)	891
BfuI	GTATCC	2 cut(s)	437, 766
BglI	GCCNNNNNGGC	2 cut(s)	908, 917
BglII	AGATCT	2 cut(s)	223, 1227
BisI	GCNGC	2 cut(s)	468, 552
BlsI	GCNGC	2 cut(s)	469, 553
Bme1390I	CCNGG	2 cut(s)	120, 1142
BmiI	GGNNCC	3 cut(s)	604, 670, 1075
BmrFI	CCNGG	2 cut(s)	120, 1142
BmrI	ACTGGG	1 cut(s)	264
BmsI	GCATC	4 cut(s)	331, 367, 385, 664
BmuI	ACTGGG	1 cut(s)	264
BpiI	GAAGAC	1 cut(s)	242
BpmI	CTGGAG	1 cut(s)	1136
BpuEI	CTTGAG	2 cut(s)	382, 476
BsaAI	YACGTR	1 cut(s)	25
BsaBI	GATNNNNATC	1 cut(s)	281
BsaI	GGTCTC	1 cut(s)	1016
BsaJI	CCNNGG	5 cut(s)	31, 119, 515, 527, 1152
Bsc4I	CCNNNNNNNGG	1 cut(s)	1070
Bse1I	ACTGG	3 cut(s)	259, 298, 1085
Bse21I	CCTNAGG	1 cut(s)	1131
Bse8I	GATNNNNATC	1 cut(s)	281
BseBI	CCWGG	2 cut(s)	120, 1142
BseDI	CCNNGG	5 cut(s)	31, 119, 515, 527, 1152
BseGI	GGATG	2 cut(s)	670, 722
BseJI	GATNNNNATC	1 cut(s)	281
BseLI	CCNNNNNNNGG	1 cut(s)	1070
BseMII	CTCAG	2 cut(s)	91, 1122
BseNI	ACTGG	3 cut(s)	259, 298, 1085
BseRI	GAGGAG	4 cut(s)	162, 453, 764, 941
BseXI	GCAGC	2 cut(s)	479, 538
BseYI	CCCAGC	1 cut(s)	230
BsgI	GTGCAG	2 cut(s)	57, 486
BshFI	GGCC	3 cut(s)	715, 902, 911
BshNI	GGYRCC	1 cut(s)	668
BsiHKAI	GWGCWC	1 cut(s)	1032
BslFI	GGGAC	1 cut(s)	750
BslI	CCNNNNNNNGG	1 cut(s)	1070
BsmAI	GTCTC	4 cut(s)	49, 108, 1016, 1032
BsmFI	GGGAC	1 cut(s)	750
BsnI	GGCC	3 cut(s)	715, 902, 911
Bso31I	GGTCTC	1 cut(s)	1016
Bsp1286I	GDGCHC	1 cut(s)	1032
Bsp1407I	TGTACA	1 cut(s)	843
Bsp143I	GATC	5 cut(s)	27, 223, 985, 1189, 1227
BspACI	CCGC	1 cut(s)	39
BspANI	GGCC	3 cut(s)	715, 902, 911
BspCNI	CTCAG	2 cut(s)	90, 1123
BspLI	GGNNCC	3 cut(s)	604, 670, 1075
BspMAI	CTGCAG	1 cut(s)	895
BspPI	GGATC	1 cut(s)	22
BspQI	GCTCTTC	2 cut(s)	5, 1037
BspT107I	GGYRCC	1 cut(s)	668
BspTNI	GGTCTC	1 cut(s)	1016
BsrGI	TGTACA	1 cut(s)	843
BsrI	ACTGG	3 cut(s)	259, 298, 1085
BssECI	CCNNGG	5 cut(s)	31, 119, 515, 527, 1152
BssMI	GATC	5 cut(s)	27, 223, 985, 1189, 1227
BssT1I	CCWWGG	1 cut(s)	1152
Bst2UI	CCWGG	2 cut(s)	120, 1142
Bst4CI	ACNGT	7 cut(s)	304, 516, 607, 673, 940, 1027, 1094
Bst6I	CTCTTC	5 cut(s)	5, 98, 741, 853, 1037
BstAUI	TGTACA	1 cut(s)	843
BstBAI	YACGTR	1 cut(s)	25
BstC8I	GCNNGC	6 cut(s)	524, 883, 900, 922, 1123, 1197
BstDEI	CTNAG	3 cut(s)	77, 200, 1131
BstDSI	CCRYGG	1 cut(s)	515
BstF5I	GGATG	2 cut(s)	670, 722
BstKTI	GATC	5 cut(s)	30, 226, 988, 1192, 1230
BstMAI	GTCTC	4 cut(s)	49, 108, 1016, 1032
BstMBI	GATC	5 cut(s)	27, 223, 985, 1189, 1227
BstMWI	GCNNNNNNNGC	5 cut(s)	404, 899, 908, 917, 1157
BstNI	CCWGG	2 cut(s)	120, 1142
BstNSI	RCATGY	2 cut(s)	526, 872
BstSCI	CCNGG	2 cut(s)	118, 1140
BstSFI	CTRYAG	1 cut(s)	891
BstV1I	GCAGC	2 cut(s)	479, 538
BstV2I	GAAGAC	1 cut(s)	242
BstX2I	RGATCY	2 cut(s)	223, 1227
BstYI	RGATCY	2 cut(s)	223, 1227
Bsu36I	CCTNAGG	1 cut(s)	1131
BsuI	GTATCC	2 cut(s)	437, 766
BsuRI	GGCC	3 cut(s)	715, 902, 911
BtgI	CCRYGG	1 cut(s)	515
BtgZI	GCGATG	1 cut(s)	271
BtsCI	GGATG	2 cut(s)	670, 722
BtsIMutI	CAGTG	1 cut(s)	204
Cac8I	GCNNGC	6 cut(s)	524, 883, 900, 922, 1123, 1197
Csp6I	GTAC	4 cut(s)	22, 172, 505, 844
CviAII	CATG	4 cut(s)	523, 869, 878, 993
CviQI	GTAC	4 cut(s)	22, 172, 505, 844
DdeI	CTNAG	3 cut(s)	77, 200, 1131
DpnI	GATC	5 cut(s)	29, 225, 987, 1191, 1229
DpnII	GATC	5 cut(s)	27, 223, 985, 1189, 1227
DraI	TTTAAA	1 cut(s)	784
Eam1104I	CTCTTC	5 cut(s)	5, 98, 741, 853, 1037
EarI	CTCTTC	5 cut(s)	5, 98, 741, 853, 1037
EciI	GGCGGA	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	1152
Eco31I	GGTCTC	1 cut(s)	1016
Eco81I	CCTNAGG	1 cut(s)	1131
EcoRII	CCWGG	2 cut(s)	118, 1140
EcoT14I	CCWWGG	1 cut(s)	1152
ErhI	CCWWGG	1 cut(s)	1152
FaeI	CATG	4 cut(s)	526, 872, 881, 996
FalI	AAGNNNNNCTT	2 cut(s)	210, 242
FaqI	GGGAC	1 cut(s)	750
FatI	CATG	4 cut(s)	522, 868, 877, 992
Fnu4HI	GCNGC	2 cut(s)	468, 552
FokI	GGATG	2 cut(s)	677, 709
Fsp4HI	GCNGC	2 cut(s)	468, 552
FspBI	CTAG	2 cut(s)	111, 1221
GluI	GCNGC	2 cut(s)	468, 552
GsaI	CCCAGC	1 cut(s)	234
GsuI	CTGGAG	1 cut(s)	1136
HaeIII	GGCC	3 cut(s)	715, 902, 911
Hin1II	CATG	4 cut(s)	526, 872, 881, 996
HincII	GTYRAC	1 cut(s)	874
HindII	GTYRAC	1 cut(s)	874
HindIII	AAGCTT	1 cut(s)	386
HinfI	GANTC	8 cut(s)	42, 101, 196, 238, 260, 277, 629, 861
HphI	GGTGA	4 cut(s)	827, 1019, 1031, 1047
Hpy166II	GTNNAC	2 cut(s)	505, 874
Hpy188I	TCNGA	6 cut(s)	276, 319, 544, 628, 1037, 1182
Hpy188III	TCNNGA	5 cut(s)	164, 455, 797, 1115, 1130
Hpy8I	GTNNAC	2 cut(s)	505, 874
HpyAV	CCTTC	5 cut(s)	274, 565, 705, 968, 1199
HpyCH4III	ACNGT	7 cut(s)	304, 516, 607, 673, 940, 1027, 1094
HpyCH4IV	ACGT	2 cut(s)	24, 67
HpyF10VI	GCNNNNNNNGC	5 cut(s)	404, 899, 908, 917, 1157
HpyF3I	CTNAG	3 cut(s)	77, 200, 1131
HpySE526I	ACGT	2 cut(s)	24, 67
Hsp92II	CATG	4 cut(s)	526, 872, 881, 996
Kzo9I	GATC	5 cut(s)	27, 223, 985, 1189, 1227
LguI	GCTCTTC	2 cut(s)	5, 1037
LmnI	GCTCC	4 cut(s)	61, 335, 983, 1170
Lsp1109I	GCAGC	2 cut(s)	479, 538
LweI	GCATC	4 cut(s)	331, 367, 385, 664
MaeI	CTAG	2 cut(s)	111, 1221
MaeII	ACGT	2 cut(s)	24, 67
MaeIII	GTNAC	1 cut(s)	493
MalI	GATC	5 cut(s)	29, 225, 987, 1191, 1229
MboI	GATC	5 cut(s)	27, 223, 985, 1189, 1227
MboII	GAAGA	7 cut(s)	22, 85, 247, 758, 870, 958, 1024
MflI	RGATCY	2 cut(s)	223, 1227
MhlI	GDGCHC	1 cut(s)	1032
MluCI	AATT	5 cut(s)	369, 399, 477, 484, 998
MlyI	GAGTC	4 cut(s)	51, 110, 232, 870
MmeI	TCCRAC	3 cut(s)	118, 415, 1192
MroXI	GAANNNNTTC	1 cut(s)	14
MseI	TTAA	7 cut(s)	390, 402, 480, 588, 765, 783, 1086
MslI	CAYNNNNRTG	1 cut(s)	132
MspR9I	CCNGG	2 cut(s)	120, 1142
MvaI	CCWGG	2 cut(s)	120, 1142
MwoI	GCNNNNNNNGC	5 cut(s)	404, 899, 908, 917, 1157
NdeII	GATC	5 cut(s)	27, 223, 985, 1189, 1227
NlaIII	CATG	4 cut(s)	526, 872, 881, 996
NlaIV	GGNNCC	3 cut(s)	604, 670, 1075
NmeAIII	GCCGAG	2 cut(s)	26, 508
NspI	RCATGY	2 cut(s)	526, 872
OliI	CACNNNNGTG	1 cut(s)	132
PaeI	GCATGC	1 cut(s)	526
PciSI	GCTCTTC	2 cut(s)	5, 1037
PdmI	GAANNNNTTC	1 cut(s)	14
PfeI	GAWTC	4 cut(s)	196, 260, 277, 629
PkrI	GCNGC	2 cut(s)	469, 553
PleI	GAGTC	4 cut(s)	50, 109, 232, 869
PpsI	GAGTC	4 cut(s)	50, 109, 232, 869
Ppu21I	YACGTR	1 cut(s)	25
Psp6I	CCWGG	2 cut(s)	118, 1140
PspFI	CCCAGC	1 cut(s)	230
PspGI	CCWGG	2 cut(s)	118, 1140
PspN4I	GGNNCC	3 cut(s)	604, 670, 1075
PstI	CTGCAG	1 cut(s)	895
PsuI	RGATCY	2 cut(s)	223, 1227
RsaI	GTAC	4 cut(s)	23, 173, 506, 845
RsaNI	GTAC	4 cut(s)	22, 172, 505, 844
RseI	CAYNNNNRTG	1 cut(s)	132
SapI	GCTCTTC	2 cut(s)	5, 1037
SaqAI	TTAA	7 cut(s)	390, 402, 480, 588, 765, 783, 1086
SatI	GCNGC	2 cut(s)	468, 552
Sau3AI	GATC	5 cut(s)	27, 223, 985, 1189, 1227
SchI	GAGTC	4 cut(s)	51, 110, 232, 870
ScrFI	CCNGG	2 cut(s)	120, 1142
SduI	GDGCHC	1 cut(s)	1032
SfaNI	GCATC	4 cut(s)	331, 367, 385, 664
SfcI	CTRYAG	1 cut(s)	891
SfiI	GGCCNNNNNGGCC	1 cut(s)	908
SmiMI	CAYNNNNRTG	1 cut(s)	132
SmlI	CTYRAG	2 cut(s)	361, 455
SmoI	CTYRAG	2 cut(s)	361, 455
SphI	GCATGC	1 cut(s)	526
Sse9I	AATT	5 cut(s)	369, 399, 477, 484, 998
SsiI	CCGC	1 cut(s)	39
SspMI	CTAG	2 cut(s)	111, 1221
StyD4I	CCNGG	2 cut(s)	118, 1140
StyI	CCWWGG	1 cut(s)	1152
TaaI	ACNGT	7 cut(s)	304, 516, 607, 673, 940, 1027, 1094
TaiI	ACGT	2 cut(s)	27, 70
TaqI	TCGA	1 cut(s)	864
TasI	AATT	5 cut(s)	369, 399, 477, 484, 998
TatI	WGTACW	1 cut(s)	843
TfiI	GAWTC	4 cut(s)	196, 260, 277, 629
Tru1I	TTAA	7 cut(s)	390, 402, 480, 588, 765, 783, 1086
Tru9I	TTAA	7 cut(s)	390, 402, 480, 588, 765, 783, 1086
TscAI	CASTG	1 cut(s)	211
TseI	GCWGC	2 cut(s)	467, 551
TspDTI	ATGAA	1 cut(s)	78
TspGWI	ACGGA	1 cut(s)	785
TspRI	CASTG	1 cut(s)	211
XceI	RCATGY	2 cut(s)	526, 872
XmnI	GAANNNNTTC	1 cut(s)	14
XspI	CTAG	2 cut(s)	111, 1221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.