AT3G52905

Holliday junction resolvase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013364
Physical Location & Seq
Reverse (-)
19614007 .. 19615754
1748 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G52905.1

Sequence Viewer

Length: 513 bp
ATGAAGTATGTGAAGCCATTGAGCTTATTGGGTAATGCGCTGAAGACCAAAGTGTCAGTCCCTGGTCGGTTTCTGGGTTTAGATGTTGGTGATAAGTATGTTGGATTAGCTATCTCAGATCCTTCAAATATGGTTGCTTCTCCATTGAGTGTTTTGCTCAGAAAGAAATCAAACATTGACCTGATGGCTACAGATTTCCAGAACCTGGTCAAAGCATTTTCTGTGTCGGGATTAGTCGTTGGTTATCCATTTGGCAAACTGAACAATGTAGAGGATGTTGTCACTGTGAATCTTTTCATTGAGGAACTTCGTAAGACCGAAAAACTCAAGGATGTGAAATACACATATTGGGACGAGCGATTATCATCAAAGACCGTTGAACTGATGTTGAAGCCCTTGAATTTGCATCCTGTTCAAGAGAAGACAATGTTGGACAAGTTAGCCGCAGTAGTTATACTTCAGGAGTATTTAGATTACGCGAACAGGTATGTAAACACTGAGCCAGCAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RuvX

Protein Analysis

170

Amino Acids

19.08

Weight (kDa)

8.63

Isoelectric Point (pI)

29.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RuvX PF03652 23 - 158 4e-31 Holliday junction resolvase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013364)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52905
fragaria_vesca FvH4_5g02300 FvH4_5g02300 FvH4_5g02300
malus_domestica MD14G1103600.v1.1
prunus_persica Prupe.5G098900_v2.0.a1
pyrus_communis pycom14g09950
rosa_chinensis RchiOBHm_Chr7g0197851
rosa_laevigata RLG00000003905
rosa_roxburghii Rroxscaffold_3G00258140
rosa_rugosa Rorug07G0044000
rosa_samantha Rh7AG167900 Rh7AG168000 Rh7BG170800 Rh7CG177200 Rh7CG177300 Rh7DG169700
rosa_wichuraiana Rw7G014630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 52
AccB7I CCANNNNNTGG 1 cut(s) 205
AccII CGCG 1 cut(s) 479
AciI CCGC 1 cut(s) 444
AclWI GGATC 1 cut(s) 113
AcsI RAATTY 1 cut(s) 400
AcuI CTGAAG 2 cut(s) 62, 443
AfiI CCNNNNNNNGG 1 cut(s) 205
AgsI TTSAA 5 cut(s) 126, 380, 391, 400, 416
AjnI CCWGG 2 cut(s) 61, 204
AjuI GAANNNNNNNTTGG 2 cut(s) 413, 445
AluBI AGCT 2 cut(s) 24, 110
AluI AGCT 2 cut(s) 24, 110
AlwI GGATC 1 cut(s) 113
AlwNI CAGNNNCTG 2 cut(s) 62, 205
ApoI RAATTY 1 cut(s) 400
ArsI GACNNNNNNTTYG 2 cut(s) 42, 74
Asp700I GAANNNNTTC 1 cut(s) 293
AspLEI GCGC 1 cut(s) 40
AsuHPI GGTGA 1 cut(s) 101
BarI GAAGNNNNNNTAC 2 cut(s) 441, 473
BbsI GAAGAC 2 cut(s) 50, 428
BccI CCATC 1 cut(s) 178
BciT130I CCWGG 2 cut(s) 63, 206
BfmI CTRYAG 1 cut(s) 189
BisI GCNGC 1 cut(s) 444
BlsI GCNGC 1 cut(s) 445
Bme1390I CCNGG 2 cut(s) 63, 206
BmrFI CCNGG 2 cut(s) 63, 206
BmsI GCATC 1 cut(s) 415
BpiI GAAGAC 2 cut(s) 50, 428
BpuEI CTTGAG 1 cut(s) 311
BsaBI GATNNNNATC 1 cut(s) 364
BsaJI CCNNGG 1 cut(s) 61
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse8I GATNNNNATC 1 cut(s) 364
BseBI CCWGG 2 cut(s) 63, 206
BseDI CCNNGG 1 cut(s) 61
BseGI GGATG 3 cut(s) 280, 337, 406
BseJI GATNNNNATC 1 cut(s) 364
BseLI CCNNNNNNNGG 1 cut(s) 205
BseMII CTCAG 3 cut(s) 129, 172, 489
Bsh1236I CGCG 1 cut(s) 479
BslFI GGGAC 2 cut(s) 44, 365
BslI CCNNNNNNNGG 1 cut(s) 205
BsmFI GGGAC 2 cut(s) 44, 365
Bsp143I GATC 1 cut(s) 118
BspACI CCGC 1 cut(s) 444
BspCNI CTCAG 3 cut(s) 128, 171, 490
BspFNI CGCG 1 cut(s) 479
BspPI GGATC 1 cut(s) 113
BssECI CCNNGG 1 cut(s) 61
BssMI GATC 1 cut(s) 118
Bst2UI CCWGG 2 cut(s) 63, 206
Bst4CI ACNGT 2 cut(s) 286, 376
BstC8I GCNNGC 1 cut(s) 504
BstDEI CTNAG 3 cut(s) 115, 158, 498
BstF5I GGATG 3 cut(s) 280, 337, 406
BstFNI CGCG 1 cut(s) 479
BstHHI GCGC 1 cut(s) 40
BstKTI GATC 1 cut(s) 121
BstMBI GATC 1 cut(s) 118
BstNI CCWGG 2 cut(s) 63, 206
BstSCI CCNGG 2 cut(s) 61, 204
BstSFI CTRYAG 1 cut(s) 189
BstUI CGCG 1 cut(s) 479
BstV2I GAAGAC 2 cut(s) 50, 428
BstX2I RGATCY 1 cut(s) 118
BstYI RGATCY 1 cut(s) 118
BtsCI GGATG 3 cut(s) 280, 337, 406
BtsIMutI CAGTG 2 cut(s) 282, 495
Cac8I GCNNGC 1 cut(s) 504
CaiI CAGNNNCTG 2 cut(s) 62, 205
CfoI GCGC 1 cut(s) 40
CsiI ACCWGGT 1 cut(s) 204
CviJI RGCY 7 cut(s) 16, 24, 110, 188, 394, 443, 502
CviKI_1 RGCY 7 cut(s) 16, 24, 110, 188, 394, 443, 502
DdeI CTNAG 3 cut(s) 115, 158, 498
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
DrdI GACNNNNNNGTC 1 cut(s) 52
DseDI GACNNNNNNGTC 1 cut(s) 52
Eco57I CTGAAG 2 cut(s) 62, 443
EcoRII CCWGG 2 cut(s) 61, 204
FaiI YATR 6 cut(s) 9, 99, 131, 346, 455, 489
FaqI GGGAC 2 cut(s) 44, 365
Fnu4HI GCNGC 1 cut(s) 444
FokI GGATG 3 cut(s) 287, 344, 393
Fsp4HI GCNGC 1 cut(s) 444
GlaI GCGC 1 cut(s) 39
GluI GCNGC 1 cut(s) 444
HhaI GCGC 1 cut(s) 40
Hin6I GCGC 1 cut(s) 38
HinP1I GCGC 1 cut(s) 38
HinfI GANTC 1 cut(s) 289
HphI GGTGA 1 cut(s) 101
Hpy166II GTNNAC 1 cut(s) 493
Hpy188I TCNGA 2 cut(s) 118, 161
Hpy188III TCNNGA 4 cut(s) 199, 228, 416, 461
Hpy8I GTNNAC 1 cut(s) 493
HpyAV CCTTC 1 cut(s) 132
HpyCH4III ACNGT 2 cut(s) 286, 376
HpyCH4V TGCA 1 cut(s) 406
HpyF3I CTNAG 3 cut(s) 115, 158, 498
HspAI GCGC 1 cut(s) 38
Kzo9I GATC 1 cut(s) 118
LweI GCATC 1 cut(s) 415
MabI ACCWGGT 1 cut(s) 204
MaeIII GTNAC 1 cut(s) 280
MalI GATC 1 cut(s) 120
MboI GATC 1 cut(s) 118
MboII GAAGA 2 cut(s) 55, 433
MflI RGATCY 1 cut(s) 118
MluCI AATT 1 cut(s) 400
MmeI TCCRAC 2 cut(s) 82, 411
MnlI CCTC 2 cut(s) 265, 295
MroXI GAANNNNTTC 1 cut(s) 293
MspR9I CCNGG 2 cut(s) 63, 206
MvaI CCWGG 2 cut(s) 63, 206
MvnI CGCG 1 cut(s) 479
NdeII GATC 1 cut(s) 118
NmuCI GTSAC 1 cut(s) 280
PdmI GAANNNNTTC 1 cut(s) 293
PfeI GAWTC 1 cut(s) 289
PflMI CCANNNNNTGG 1 cut(s) 205
PkrI GCNGC 1 cut(s) 445
Psp6I CCWGG 2 cut(s) 61, 204
PspGI CCWGG 2 cut(s) 61, 204
PstNI CAGNNNCTG 2 cut(s) 62, 205
PsuI RGATCY 1 cut(s) 118
SatI GCNGC 1 cut(s) 444
Sau3AI GATC 1 cut(s) 118
ScrFI CCNGG 2 cut(s) 63, 206
SetI ASST 5 cut(s) 26, 112, 183, 207, 488
SexAI ACCWGGT 1 cut(s) 204
SfaNI GCATC 1 cut(s) 415
SfcI CTRYAG 1 cut(s) 189
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
Sse9I AATT 1 cut(s) 400
SsiI CCGC 1 cut(s) 444
StyD4I CCNGG 2 cut(s) 61, 204
TaaI ACNGT 2 cut(s) 286, 376
TaqII GACCGA 1 cut(s) 332
TasI AATT 1 cut(s) 400
TauI GCSGC 1 cut(s) 446
TfiI GAWTC 1 cut(s) 289
TscAI CASTG 2 cut(s) 289, 502
TseFI GTSAC 1 cut(s) 280
Tsp45I GTSAC 1 cut(s) 280
TspDTI ATGAA 2 cut(s) 17, 286
TspRI CASTG 2 cut(s) 289, 502
Van91I CCANNNNNTGG 1 cut(s) 205
XapI RAATTY 1 cut(s) 400
XmnI GAANNNNTTC 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.