Rh7CG177300

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0013364
Physical Location & Seq
Forward (+)
15142801 .. 15144521
1721 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG177300.1

Sequence Viewer

Length: 555 bp
ATGCTGATGCTCCAGACCTTGAAGAGAATTTGTGATGCTAAGTACCTGACAGTTAAAGCTCCAATTTTGGCGGCCCTTGACATTGGAAATCAACGTCTTCTGCCTACATTAAATAATTTGAACCACTTGGAGCTGCAACTTGAAACTTGTCGATGTTTGCAATCACTGACAACTTGGCTCAAAATATCACCAAATCTGGAACATCTCAAGATATCACCAAATAGGGAACATCTTTGGTTTGCAGAGGACTACAAATATTGTGATGATGACAATGAGGATGTTCTTGTACATGAATGGGGTGTACCAGAATTTGCAAACATTTGTTTGGTTTCACACCTCAAGACTGTTTGCCTATGGGATTTCAAGGGGTGTCCAAATGACATGGAAGTGGCAAAGTACTTGGTGAAGCATGGCAAATCTTTGAATAAGGTCTCCAAGAGTAGGAGCAACAAATTGGAACGATTCTGGGTTTTGGCATCTGTCCTGGTGGTCTTGGTTGGTACGATGGCTGGGCCGGCCTATAGATTGCTTAGTAGATTTCGTCGGTTTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

184

Amino Acids

21.29

Weight (kDa)

8.83

Isoelectric Point (pI)

42.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 108 - 144 9.2e-10 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013364)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52905
fragaria_vesca FvH4_5g02300 FvH4_5g02300 FvH4_5g02300
malus_domestica MD14G1103600.v1.1
prunus_persica Prupe.5G098900_v2.0.a1
pyrus_communis pycom14g09950
rosa_chinensis RchiOBHm_Chr7g0197851
rosa_laevigata RLG00000003905
rosa_roxburghii Rroxscaffold_3G00258140
rosa_rugosa Rorug07G0044000
rosa_samantha Rh7AG167900 Rh7AG168000 Rh7BG170800 Rh7CG177200 Rh7CG177300 Rh7DG169700
rosa_wichuraiana Rw7G014630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 71
AcsI RAATTY 2 cut(s) 27, 308
AfaI GTAC 5 cut(s) 44, 288, 303, 398, 502
AfiI CCNNNNNNNGG 1 cut(s) 441
AgsI TTSAA 5 cut(s) 22, 121, 143, 364, 424
AjnI CCWGG 1 cut(s) 483
AluBI AGCT 2 cut(s) 59, 133
AluI AGCT 2 cut(s) 59, 133
Alw26I GTCTC 1 cut(s) 436
AoxI GGCC 3 cut(s) 72, 512, 516
ApeKI GCWGC 1 cut(s) 133
ApoI RAATTY 2 cut(s) 27, 308
AspS9I GGNCC 2 cut(s) 73, 512
AsuHPI GGTGA 3 cut(s) 180, 207, 415
BbsI GAAGAC 1 cut(s) 89
BbvI GCAGC 1 cut(s) 120
BccI CCATC 1 cut(s) 499
BciT130I CCWGG 1 cut(s) 485
BcoDI GTCTC 1 cut(s) 436
BfmI CTRYAG 1 cut(s) 520
BisI GCNGC 2 cut(s) 72, 134
BlsI GCNGC 2 cut(s) 73, 135
BmcAI AGTACT 1 cut(s) 398
Bme1390I CCNGG 1 cut(s) 485
BmgT120I GGNCC 2 cut(s) 73, 512
BmrFI CCNGG 1 cut(s) 485
BmsI GCATC 2 cut(s) 25, 485
BpiI GAAGAC 1 cut(s) 89
BpuEI CTTGAG 2 cut(s) 191, 323
BsaI GGTCTC 1 cut(s) 436
Bsc4I CCNNNNNNNGG 1 cut(s) 441
Bse118I RCCGGY 1 cut(s) 514
BseBI CCWGG 1 cut(s) 485
BseGI GGATG 1 cut(s) 283
BseLI CCNNNNNNNGG 1 cut(s) 441
BseXI GCAGC 1 cut(s) 120
BseYI CCCAGC 1 cut(s) 509
BshFI GGCC 3 cut(s) 74, 514, 518
BsiSI CCGG 1 cut(s) 515
BslI CCNNNNNNNGG 1 cut(s) 441
BsmAI GTCTC 1 cut(s) 436
BsnI GGCC 3 cut(s) 74, 514, 518
Bso31I GGTCTC 1 cut(s) 436
Bsp1407I TGTACA 1 cut(s) 286
BspACI CCGC 1 cut(s) 71
BspANI GGCC 3 cut(s) 74, 514, 518
BspTNI GGTCTC 1 cut(s) 436
BsrFI RCCGGY 1 cut(s) 514
BsrGI TGTACA 1 cut(s) 286
BssAI RCCGGY 1 cut(s) 514
Bst2UI CCWGG 1 cut(s) 485
Bst4CI ACNGT 2 cut(s) 52, 346
Bst6I CTCTTC 1 cut(s) 17
BstAUI TGTACA 1 cut(s) 286
BstC8I GCNNGC 1 cut(s) 516
BstDEI CTNAG 2 cut(s) 39, 530
BstF5I GGATG 1 cut(s) 283
BstMAI GTCTC 1 cut(s) 436
BstMWI GCNNNNNNNGC 1 cut(s) 515
BstNI CCWGG 1 cut(s) 485
BstSCI CCNGG 1 cut(s) 483
BstSFI CTRYAG 1 cut(s) 520
BstV1I GCAGC 1 cut(s) 120
BstV2I GAAGAC 1 cut(s) 89
BsuRI GGCC 3 cut(s) 74, 514, 518
BtsCI GGATG 1 cut(s) 283
BtsIMutI CAGTG 1 cut(s) 164
Cac8I GCNNGC 1 cut(s) 516
Cfr10I RCCGGY 1 cut(s) 514
Cfr13I GGNCC 2 cut(s) 73, 512
Csp6I GTAC 5 cut(s) 43, 287, 302, 397, 501
CviAII CATG 3 cut(s) 290, 382, 410
CviJI RGCY 7 cut(s) 59, 74, 133, 178, 509, 514, 518
CviKI_1 RGCY 7 cut(s) 59, 74, 133, 178, 509, 514, 518
CviQI GTAC 5 cut(s) 43, 287, 302, 397, 501
DdeI CTNAG 2 cut(s) 39, 530
Eam1104I CTCTTC 1 cut(s) 17
EarI CTCTTC 1 cut(s) 17
Eco31I GGTCTC 1 cut(s) 436
Eco32I GATATC 1 cut(s) 213
EcoRII CCWGG 1 cut(s) 483
EcoRV GATATC 1 cut(s) 213
FaeI CATG 3 cut(s) 293, 385, 413
FaiI YATR 6 cut(s) 291, 355, 383, 411, 522, 551
FatI CATG 3 cut(s) 289, 381, 409
Fnu4HI GCNGC 2 cut(s) 72, 134
FokI GGATG 1 cut(s) 290
FseI GGCCGGCC 1 cut(s) 518
Fsp4HI GCNGC 2 cut(s) 72, 134
GluI GCNGC 2 cut(s) 72, 134
GsaI CCCAGC 1 cut(s) 513
HaeIII GGCC 3 cut(s) 74, 514, 518
HapII CCGG 1 cut(s) 515
Hin1II CATG 3 cut(s) 293, 385, 413
HinfI GANTC 1 cut(s) 462
HpaII CCGG 1 cut(s) 515
HphI GGTGA 3 cut(s) 180, 207, 415
Hpy166II GTNNAC 1 cut(s) 302
Hpy188III TCNNGA 4 cut(s) 13, 197, 208, 340
Hpy8I GTNNAC 1 cut(s) 302
Hpy99I CGWCG 1 cut(s) 546
HpyCH4III ACNGT 2 cut(s) 52, 346
HpyCH4IV ACGT 1 cut(s) 94
HpyCH4V TGCA 4 cut(s) 136, 160, 242, 314
HpyF10VI GCNNNNNNNGC 1 cut(s) 515
HpyF3I CTNAG 2 cut(s) 39, 530
HpySE526I ACGT 1 cut(s) 94
Hsp92II CATG 3 cut(s) 293, 385, 413
KroI GCCGGC 1 cut(s) 514
KroNI GCCGGC 1 cut(s) 516
LmnI GCTCC 4 cut(s) 15, 64, 130, 444
LpnPI CCDG 9 cut(s) 26, 59, 182, 318, 451, 470, 495, 497, 528
Lsp1109I GCAGC 1 cut(s) 120
LweI GCATC 2 cut(s) 25, 485
MaeII ACGT 1 cut(s) 94
MboII GAAGA 2 cut(s) 34, 89
MluCI AATT 5 cut(s) 27, 63, 115, 308, 452
MnlI CCTC 3 cut(s) 238, 268, 347
MroNI GCCGGC 1 cut(s) 514
MseI TTAA 2 cut(s) 54, 110
MslI CAYNNNNRTG 1 cut(s) 386
MspI CCGG 1 cut(s) 515
MspR9I CCNGG 1 cut(s) 485
MvaI CCWGG 1 cut(s) 485
MwoI GCNNNNNNNGC 1 cut(s) 515
NaeI GCCGGC 1 cut(s) 516
NgoMIV GCCGGC 1 cut(s) 514
NlaIII CATG 3 cut(s) 293, 385, 413
PdiI GCCGGC 1 cut(s) 516
PfeI GAWTC 1 cut(s) 462
PkrI GCNGC 2 cut(s) 73, 135
Psp6I CCWGG 1 cut(s) 483
PspFI CCCAGC 1 cut(s) 509
PspGI CCWGG 1 cut(s) 483
PspPI GGNCC 2 cut(s) 73, 512
RigI GGCCGGCC 1 cut(s) 518
RsaI GTAC 5 cut(s) 44, 288, 303, 398, 502
RsaNI GTAC 5 cut(s) 43, 287, 302, 397, 501
RseI CAYNNNNRTG 1 cut(s) 386
SaqAI TTAA 2 cut(s) 54, 110
SatI GCNGC 2 cut(s) 72, 134
Sau96I GGNCC 2 cut(s) 73, 512
ScaI AGTACT 1 cut(s) 398
ScrFI CCNGG 1 cut(s) 485
SetI ASST 7 cut(s) 20, 48, 61, 97, 135, 339, 432
SfaNI GCATC 2 cut(s) 25, 485
SfcI CTRYAG 1 cut(s) 520
SmiMI CAYNNNNRTG 1 cut(s) 386
SmlI CTYRAG 2 cut(s) 206, 338
SmoI CTYRAG 2 cut(s) 206, 338
Sse9I AATT 5 cut(s) 27, 63, 115, 308, 452
SsiI CCGC 1 cut(s) 71
SspI AATATT 1 cut(s) 257
StyD4I CCNGG 1 cut(s) 483
TaaI ACNGT 2 cut(s) 52, 346
TaiI ACGT 1 cut(s) 97
TaqI TCGA 1 cut(s) 151
TasI AATT 5 cut(s) 27, 63, 115, 308, 452
TatI WGTACW 2 cut(s) 286, 396
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 1 cut(s) 462
Tru1I TTAA 2 cut(s) 54, 110
Tru9I TTAA 2 cut(s) 54, 110
TscAI CASTG 1 cut(s) 171
TseI GCWGC 1 cut(s) 133
TspDTI ATGAA 1 cut(s) 306
TspRI CASTG 1 cut(s) 171
XapI RAATTY 2 cut(s) 27, 308
ZrmI AGTACT 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.