Rh7AG168000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0013364
Physical Location & Seq
Forward (+)
14380851 .. 14381944
1094 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG168000.1

Sequence Viewer

Length: 561 bp
ATGCTATTGGCAATCCCAGAAAGTGGAATTTGTGATGCTAAGTACCTGACAGTTAAAGCTCCAATTTTGGCGGCCCTTGACATTGGAAATCAACGTCTTCTGCCTACATTAAATAATTTGAACCACTTAGAGCTGCAACTTGAAACTTGTCGATGTTTGCAATCACTGACAACTTGGCTCAAAATATCACCAAATCTGGAACATCTCAAGATATCACCAAATAGGGAACATATTTGGTTTGCAGAGGACTACAAATATTGTGATCATGACAATGAGGATGTTCTTGTACATGAATGGGGTGCACCAGAATTTGCAAACATTTGTTTGGTTTCACACCTCAAGACTGTTTGCCTATGGGATTTCAAGGGGTGTCCAAATGACATGGAAGTGGCAAAGTACTTGGTGAAGCATGGCAAGGCTTTGAATAGGGTGACTATTCATACTCACTTCAGTGAAAACAAAGAGATGAAGTCACGGTCTCCTGCTGCCTTATGGTCGAAATTTTCAAAGTTCCCAAGGGGTTCCAAGACATGTGAGATTGAATTTCGGATAATTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

186

Amino Acids

21.39

Weight (kDa)

7.1

Isoelectric Point (pI)

45.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 108 - 146 2.1e-10 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013364)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52905
fragaria_vesca FvH4_5g02300 FvH4_5g02300 FvH4_5g02300
malus_domestica MD14G1103600.v1.1
prunus_persica Prupe.5G098900_v2.0.a1
pyrus_communis pycom14g09950
rosa_chinensis RchiOBHm_Chr7g0197851
rosa_laevigata RLG00000003905
rosa_roxburghii Rroxscaffold_3G00258140
rosa_rugosa Rorug07G0044000
rosa_samantha Rh7AG167900 Rh7AG168000 Rh7BG170800 Rh7CG177200 Rh7CG177300 Rh7DG169700
rosa_wichuraiana Rw7G014630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 23
AciI CCGC 1 cut(s) 71
AcsI RAATTY 4 cut(s) 27, 308, 500, 542
AcuI CTGAAG 1 cut(s) 433
AfaI GTAC 3 cut(s) 44, 288, 398
AfiI CCNNNNNNNGG 1 cut(s) 23
AflIII ACRYGT 1 cut(s) 530
AgsI TTSAA 6 cut(s) 121, 143, 364, 424, 507, 542
AleI CACNNNNGTG 1 cut(s) 450
AluBI AGCT 2 cut(s) 59, 133
AluI AGCT 2 cut(s) 59, 133
Alw21I GWGCWC 1 cut(s) 304
Alw26I GTCTC 1 cut(s) 483
Alw44I GTGCAC 1 cut(s) 300
AoxI GGCC 1 cut(s) 72
ApaLI GTGCAC 1 cut(s) 300
ApeKI GCWGC 2 cut(s) 133, 485
ApoI RAATTY 4 cut(s) 27, 308, 500, 542
AspS9I GGNCC 1 cut(s) 73
AsuHPI GGTGA 4 cut(s) 180, 207, 415, 442
BaeGI GKGCMC 1 cut(s) 304
BbsI GAAGAC 1 cut(s) 89
Bbv12I GWGCWC 1 cut(s) 304
BbvI GCAGC 2 cut(s) 120, 472
BclI TGATCA 1 cut(s) 262
BcoDI GTCTC 1 cut(s) 483
BisI GCNGC 3 cut(s) 72, 134, 486
BlsI GCNGC 3 cut(s) 73, 135, 487
BmcAI AGTACT 1 cut(s) 398
BmgT120I GGNCC 1 cut(s) 73
BmiI GGNNCC 1 cut(s) 523
BmsI GCATC 1 cut(s) 25
BpiI GAAGAC 1 cut(s) 89
BpuEI CTTGAG 2 cut(s) 191, 323
BsaI GGTCTC 1 cut(s) 483
BsaJI CCNNGG 1 cut(s) 515
Bsc4I CCNNNNNNNGG 1 cut(s) 23
BseDI CCNNGG 1 cut(s) 515
BseGI GGATG 1 cut(s) 283
BseLI CCNNNNNNNGG 1 cut(s) 23
BseSI GKGCMC 1 cut(s) 304
BseXI GCAGC 2 cut(s) 120, 472
BshFI GGCC 1 cut(s) 74
BsiHKAI GWGCWC 1 cut(s) 304
BslI CCNNNNNNNGG 1 cut(s) 23
BsmAI GTCTC 1 cut(s) 483
BsnI GGCC 1 cut(s) 74
Bso31I GGTCTC 1 cut(s) 483
Bsp1286I GDGCHC 1 cut(s) 304
Bsp1407I TGTACA 1 cut(s) 286
Bsp143I GATC 1 cut(s) 262
BspACI CCGC 1 cut(s) 71
BspANI GGCC 1 cut(s) 74
BspHI TCATGA 1 cut(s) 265
BspLI GGNNCC 1 cut(s) 523
BspTNI GGTCTC 1 cut(s) 483
BsrGI TGTACA 1 cut(s) 286
BssECI CCNNGG 1 cut(s) 515
BssMI GATC 1 cut(s) 262
BssT1I CCWWGG 1 cut(s) 515
Bst4CI ACNGT 3 cut(s) 52, 346, 477
BstAUI TGTACA 1 cut(s) 286
BstDEI CTNAG 2 cut(s) 39, 127
BstF5I GGATG 1 cut(s) 283
BstKTI GATC 1 cut(s) 265
BstMAI GTCTC 1 cut(s) 483
BstMBI GATC 1 cut(s) 262
BstNSI RCATGY 1 cut(s) 534
BstSLI GKGCMC 1 cut(s) 304
BstV1I GCAGC 2 cut(s) 120, 472
BstV2I GAAGAC 1 cut(s) 89
BsuRI GGCC 1 cut(s) 74
BtsCI GGATG 1 cut(s) 283
BtsIMutI CAGTG 2 cut(s) 164, 457
CciI TCATGA 1 cut(s) 265
Cfr13I GGNCC 1 cut(s) 73
Csp6I GTAC 3 cut(s) 43, 287, 397
CviAII CATG 5 cut(s) 266, 290, 382, 410, 531
CviJI RGCY 5 cut(s) 59, 74, 133, 178, 419
CviKI_1 RGCY 5 cut(s) 59, 74, 133, 178, 419
CviQI GTAC 3 cut(s) 43, 287, 397
DdeI CTNAG 2 cut(s) 39, 127
DpnI GATC 1 cut(s) 264
DpnII GATC 1 cut(s) 262
Eco130I CCWWGG 1 cut(s) 515
Eco31I GGTCTC 1 cut(s) 483
Eco32I GATATC 1 cut(s) 213
Eco57I CTGAAG 1 cut(s) 433
EcoRV GATATC 1 cut(s) 213
EcoT14I CCWWGG 1 cut(s) 515
ErhI CCWWGG 1 cut(s) 515
FaeI CATG 5 cut(s) 269, 293, 385, 413, 534
FaiI YATR 9 cut(s) 231, 267, 291, 355, 383, 411, 441, 493, 532
FatI CATG 5 cut(s) 265, 289, 381, 409, 530
FbaI TGATCA 1 cut(s) 262
Fnu4HI GCNGC 3 cut(s) 72, 134, 486
FokI GGATG 1 cut(s) 290
Fsp4HI GCNGC 3 cut(s) 72, 134, 486
GluI GCNGC 3 cut(s) 72, 134, 486
HaeIII GGCC 1 cut(s) 74
Hin1II CATG 5 cut(s) 269, 293, 385, 413, 534
HphI GGTGA 4 cut(s) 180, 207, 415, 442
Hpy166II GTNNAC 1 cut(s) 302
Hpy188I TCNGA 1 cut(s) 549
Hpy188III TCNNGA 4 cut(s) 197, 208, 266, 340
Hpy8I GTNNAC 1 cut(s) 302
HpyCH4III ACNGT 3 cut(s) 52, 346, 477
HpyCH4IV ACGT 1 cut(s) 94
HpyCH4V TGCA 5 cut(s) 136, 160, 242, 302, 314
HpyF3I CTNAG 2 cut(s) 39, 127
HpySE526I ACGT 1 cut(s) 94
Hsp92II CATG 5 cut(s) 269, 293, 385, 413, 534
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 1 cut(s) 262
LmnI GCTCC 1 cut(s) 64
LpnPI CCDG 5 cut(s) 30, 59, 182, 318, 495
Lsp1109I GCAGC 2 cut(s) 120, 472
LweI GCATC 1 cut(s) 25
MaeII ACGT 1 cut(s) 94
MaeIII GTNAC 2 cut(s) 430, 471
MalI GATC 1 cut(s) 264
MboI GATC 1 cut(s) 262
MboII GAAGA 1 cut(s) 89
MhlI GDGCHC 1 cut(s) 304
MluCI AATT 7 cut(s) 27, 63, 115, 308, 500, 542, 552
MnlI CCTC 3 cut(s) 238, 268, 347
MseI TTAA 2 cut(s) 54, 110
MslI CAYNNNNRTG 3 cut(s) 270, 386, 450
NdeII GATC 1 cut(s) 262
NlaIII CATG 5 cut(s) 269, 293, 385, 413, 534
NlaIV GGNNCC 1 cut(s) 523
NmuCI GTSAC 2 cut(s) 430, 471
NspI RCATGY 1 cut(s) 534
OliI CACNNNNGTG 1 cut(s) 450
PagI TCATGA 1 cut(s) 265
PciI ACATGT 1 cut(s) 530
PflMI CCANNNNNTGG 1 cut(s) 23
PkrI GCNGC 3 cut(s) 73, 135, 487
PscI ACATGT 1 cut(s) 530
PspN4I GGNNCC 1 cut(s) 523
PspPI GGNCC 1 cut(s) 73
RsaI GTAC 3 cut(s) 44, 288, 398
RsaNI GTAC 3 cut(s) 43, 287, 397
RseI CAYNNNNRTG 3 cut(s) 270, 386, 450
SaqAI TTAA 2 cut(s) 54, 110
SatI GCNGC 3 cut(s) 72, 134, 486
Sau3AI GATC 1 cut(s) 262
Sau96I GGNCC 1 cut(s) 73
ScaI AGTACT 1 cut(s) 398
SduI GDGCHC 1 cut(s) 304
SetI ASST 5 cut(s) 48, 61, 97, 135, 339
SfaNI GCATC 1 cut(s) 25
SmiMI CAYNNNNRTG 3 cut(s) 270, 386, 450
SmlI CTYRAG 2 cut(s) 206, 338
SmoI CTYRAG 2 cut(s) 206, 338
Sse9I AATT 7 cut(s) 27, 63, 115, 308, 500, 542, 552
SsiI CCGC 1 cut(s) 71
SspI AATATT 1 cut(s) 257
StyI CCWWGG 1 cut(s) 515
TaaI ACNGT 3 cut(s) 52, 346, 477
TaiI ACGT 1 cut(s) 97
TaqI TCGA 2 cut(s) 151, 497
TasI AATT 7 cut(s) 27, 63, 115, 308, 500, 542, 552
TatI WGTACW 2 cut(s) 286, 396
TauI GCSGC 1 cut(s) 74
Tru1I TTAA 2 cut(s) 54, 110
Tru9I TTAA 2 cut(s) 54, 110
TscAI CASTG 2 cut(s) 171, 457
TseFI GTSAC 2 cut(s) 430, 471
TseI GCWGC 2 cut(s) 133, 485
Tsp45I GTSAC 2 cut(s) 430, 471
TspDTI ATGAA 3 cut(s) 306, 428, 482
TspRI CASTG 2 cut(s) 171, 457
Van91I CCANNNNNTGG 1 cut(s) 23
VneI GTGCAC 1 cut(s) 300
XapI RAATTY 4 cut(s) 27, 308, 500, 542
XceI RCATGY 1 cut(s) 534
ZrmI AGTACT 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.