FvH4_5g02300

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0013364
Physical Location & Seq
Reverse (-)
1406473 .. 1408105
1633 bp
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UTR
Exon/CDS
Intron
FvH4_5g02300.t3

Sequence Viewer

Length: 408 bp
ATGAAGTACGTCAGGCCGTGGAACCTGTTCCTCGATTTGCAGAAGGCCAAAGCTGCCGGAGGCGGCGGCCGCCTGCTCGGCTTGGACGTCGGCGACAAGTACGTCGGCCTCGCCGTCTCCGACTGCCATAACAAAATCGCATTGCCTCTAAGTGTTCTGCTTCGGAAGAAATCAACCCTGGGATTAATGGCCGAAGATTTCCAGAACCTGGCGTTGGAGTTTTCACTGGTGGGATTTATTGTTGGCTGCCCTCTCGACACGCTGAGAAAGAATCCTGGGGTTTTCCAAGTAAAACGTCTGATTGATGATCTCTGCAAGACGGAAAAACTTGAAGGCATGAAGTATACGTATTGGGATGAGTGCTATACTTCACAGGTAGTGTTGGAACTTGGAAGTTCTCTTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RuvX

Protein Analysis

136

Amino Acids

14.99

Weight (kDa)

8.33

Isoelectric Point (pI)

30.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RuvX PF03652 24 - 154 8.3e-19 Holliday junction resolvase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013364)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52905
fragaria_vesca FvH4_5g02300 FvH4_5g02300 FvH4_5g02300
malus_domestica MD14G1103600.v1.1
prunus_persica Prupe.5G098900_v2.0.a1
pyrus_communis pycom14g09950
rosa_chinensis RchiOBHm_Chr7g0197851
rosa_laevigata RLG00000003905
rosa_roxburghii Rroxscaffold_3G00258140
rosa_rugosa Rorug07G0044000
rosa_samantha Rh7AG167900 Rh7AG168000 Rh7BG170800 Rh7CG177200 Rh7CG177300 Rh7DG169700
rosa_wichuraiana Rw7G014630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 101
AatII GACGTC 1 cut(s) 90
AccB7I CCANNNNNTGG 1 cut(s) 208
AccI GTMKAC 1 cut(s) 344
AciI CCGC 3 cut(s) 63, 66, 70
AcoI YGGCCR 2 cut(s) 67, 189
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 2 cut(s) 8, 101
AfiI CCNNNNNNNGG 2 cut(s) 208, 214
AgsI TTSAA 1 cut(s) 332
AjnI CCWGG 3 cut(s) 177, 207, 274
AjuI GAANNNNNNNTTGG 2 cut(s) 197, 229
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
Alw26I GTCTC 1 cut(s) 121
AlwNI CAGNNNCTG 1 cut(s) 208
AoxI GGCC 5 cut(s) 14, 45, 67, 106, 189
ApeKI GCWGC 2 cut(s) 53, 246
AseI ATTAAT 1 cut(s) 185
Asp700I GAANNNNTTC 1 cut(s) 26
BbvI GCAGC 2 cut(s) 40, 233
BceAI ACGGC 1 cut(s) 98
BciT130I CCWGG 3 cut(s) 179, 209, 276
BcoDI GTCTC 1 cut(s) 121
BglI GCCNNNNNGGC 1 cut(s) 78
BisI GCNGC 5 cut(s) 54, 64, 67, 70, 247
BlsI GCNGC 5 cut(s) 55, 65, 68, 71, 248
Bme1390I CCNGG 3 cut(s) 179, 209, 276
BmiI GGNNCC 1 cut(s) 23
BmrFI CCNGG 3 cut(s) 179, 209, 276
BsaAI YACGTR 1 cut(s) 348
BsaHI GRCGYC 1 cut(s) 87
BsaJI CCNNGG 4 cut(s) 17, 177, 178, 275
Bsc4I CCNNNNNNNGG 2 cut(s) 208, 214
Bse1I ACTGG 1 cut(s) 231
Bse3DI GCAATG 1 cut(s) 140
BseBI CCWGG 3 cut(s) 179, 209, 276
BseDI CCNNGG 4 cut(s) 17, 177, 178, 275
BseGI GGATG 1 cut(s) 361
BseLI CCNNNNNNNGG 2 cut(s) 208, 214
BseMI GCAATG 1 cut(s) 140
BseMII CTCAG 1 cut(s) 254
BseNI ACTGG 1 cut(s) 231
BseX3I CGGCCG 1 cut(s) 67
BseXI GCAGC 2 cut(s) 40, 233
Bsh1285I CGRYCG 1 cut(s) 70
BshFI GGCC 5 cut(s) 16, 47, 69, 108, 191
BsiEI CGRYCG 1 cut(s) 70
BsiSI CCGG 1 cut(s) 57
BslI CCNNNNNNNGG 2 cut(s) 208, 214
BsmAI GTCTC 1 cut(s) 121
BsmBI CGTCTC 1 cut(s) 121
BsnI GGCC 5 cut(s) 16, 47, 69, 108, 191
Bsp143I GATC 1 cut(s) 307
BspACI CCGC 3 cut(s) 63, 66, 70
BspANI GGCC 5 cut(s) 16, 47, 69, 108, 191
BspCNI CTCAG 1 cut(s) 255
BspLI GGNNCC 1 cut(s) 23
BsrDI GCAATG 1 cut(s) 140
BsrI ACTGG 1 cut(s) 231
BssECI CCNNGG 4 cut(s) 17, 177, 178, 275
BssMI GATC 1 cut(s) 307
BssNAI GTATAC 1 cut(s) 345
BssNI GRCGYC 1 cut(s) 87
Bst1107I GTATAC 1 cut(s) 345
Bst2UI CCWGG 3 cut(s) 179, 209, 276
Bst6I CTCTTC 1 cut(s) 405
BstACI GRCGYC 1 cut(s) 87
BstBAI YACGTR 1 cut(s) 348
BstC8I GCNNGC 1 cut(s) 74
BstDEI CTNAG 2 cut(s) 149, 263
BstDSI CCRYGG 1 cut(s) 17
BstF5I GGATG 1 cut(s) 361
BstKTI GATC 1 cut(s) 310
BstMAI GTCTC 1 cut(s) 121
BstMBI GATC 1 cut(s) 307
BstMCI CGRYCG 1 cut(s) 70
BstMWI GCNNNNNNNGC 3 cut(s) 53, 69, 78
BstNI CCWGG 3 cut(s) 179, 209, 276
BstSCI CCNGG 3 cut(s) 177, 207, 274
BstSNI TACGTA 1 cut(s) 348
BstV1I GCAGC 2 cut(s) 40, 233
BstZ17I GTATAC 1 cut(s) 345
BstZI CGGCCG 1 cut(s) 67
BsuRI GGCC 5 cut(s) 16, 47, 69, 108, 191
BtgI CCRYGG 1 cut(s) 17
BtsCI GGATG 1 cut(s) 361
BtsIMutI CAGTG 1 cut(s) 224
Cac8I GCNNGC 1 cut(s) 74
CaiI CAGNNNCTG 1 cut(s) 208
CciNI GCGGCCGC 1 cut(s) 67
Csp6I GTAC 2 cut(s) 7, 100
CviAII CATG 1 cut(s) 337
CviJI RGCY 8 cut(s) 16, 47, 53, 69, 81, 108, 191, 246
CviKI_1 RGCY 8 cut(s) 16, 47, 53, 69, 81, 108, 191, 246
CviQI GTAC 2 cut(s) 7, 100
DdeI CTNAG 2 cut(s) 149, 263
DpnI GATC 1 cut(s) 309
DpnII GATC 1 cut(s) 307
DrdI GACNNNNNNGTC 1 cut(s) 101
DseDI GACNNNNNNGTC 1 cut(s) 101
EaeI YGGCCR 2 cut(s) 67, 189
EagI CGGCCG 1 cut(s) 67
Eam1104I CTCTTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 405
EclXI CGGCCG 1 cut(s) 67
Eco105I TACGTA 1 cut(s) 348
Eco52I CGGCCG 1 cut(s) 67
EcoRII CCWGG 3 cut(s) 177, 207, 274
Esp3I CGTCTC 1 cut(s) 121
FaeI CATG 1 cut(s) 340
FaiI YATR 4 cut(s) 129, 338, 345, 366
FatI CATG 1 cut(s) 336
FblI GTMKAC 1 cut(s) 344
Fnu4HI GCNGC 5 cut(s) 54, 64, 67, 70, 247
FokI GGATG 1 cut(s) 368
Fsp4HI GCNGC 5 cut(s) 54, 64, 67, 70, 247
GluI GCNGC 5 cut(s) 54, 64, 67, 70, 247
HaeIII GGCC 5 cut(s) 16, 47, 69, 108, 191
HapII CCGG 1 cut(s) 57
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 1 cut(s) 340
HinfI GANTC 1 cut(s) 271
HpaII CCGG 1 cut(s) 57
Hpy166II GTNNAC 1 cut(s) 345
Hpy188I TCNGA 3 cut(s) 121, 165, 300
Hpy188III TCNNGA 2 cut(s) 202, 254
Hpy8I GTNNAC 1 cut(s) 345
Hpy99I CGWCG 2 cut(s) 92, 107
HpyAV CCTTC 2 cut(s) 37, 326
HpyCH4IV ACGT 5 cut(s) 9, 87, 102, 295, 347
HpyCH4V TGCA 2 cut(s) 40, 315
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 69, 78
HpyF3I CTNAG 2 cut(s) 149, 263
HpySE526I ACGT 5 cut(s) 9, 87, 102, 295, 347
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 1 cut(s) 340
Kzo9I GATC 1 cut(s) 307
Lsp1109I GCAGC 2 cut(s) 40, 233
MaeII ACGT 5 cut(s) 9, 87, 102, 295, 347
MalI GATC 1 cut(s) 309
MboI GATC 1 cut(s) 307
MboII GAAGA 3 cut(s) 178, 206, 392
MmeI TCCRAC 3 cut(s) 144, 195, 363
MnlI CCTC 5 cut(s) 41, 53, 119, 156, 261
MroXI GAANNNNTTC 1 cut(s) 26
MseI TTAA 1 cut(s) 185
MspI CCGG 1 cut(s) 57
MspR9I CCNGG 3 cut(s) 179, 209, 276
MvaI CCWGG 3 cut(s) 179, 209, 276
MwoI GCNNNNNNNGC 3 cut(s) 53, 69, 78
NdeII GATC 1 cut(s) 307
NlaIII CATG 1 cut(s) 340
NlaIV GGNNCC 1 cut(s) 23
NmeAIII GCCGAG 1 cut(s) 57
NotI GCGGCCGC 1 cut(s) 67
PasI CCCWGGG 1 cut(s) 178
PcsI WCGNNNNNNNCGW 3 cut(s) 84, 111, 117
PdmI GAANNNNTTC 1 cut(s) 26
PfeI GAWTC 1 cut(s) 271
PflMI CCANNNNNTGG 1 cut(s) 208
PkrI GCNGC 5 cut(s) 55, 65, 68, 71, 248
Ppu21I YACGTR 1 cut(s) 348
PshBI ATTAAT 1 cut(s) 185
Psp6I CCWGG 3 cut(s) 177, 207, 274
PspGI CCWGG 3 cut(s) 177, 207, 274
PspN4I GGNNCC 1 cut(s) 23
PstNI CAGNNNCTG 1 cut(s) 208
RsaI GTAC 2 cut(s) 8, 101
RsaNI GTAC 2 cut(s) 7, 100
SaqAI TTAA 1 cut(s) 185
SatI GCNGC 5 cut(s) 54, 64, 67, 70, 247
Sau3AI GATC 1 cut(s) 307
ScrFI CCNGG 3 cut(s) 179, 209, 276
SetI ASST 9 cut(s) 12, 27, 55, 90, 105, 210, 298, 350, 378
SnaBI TACGTA 1 cut(s) 348
SsiI CCGC 3 cut(s) 63, 66, 70
StyD4I CCNGG 3 cut(s) 177, 207, 274
TaiI ACGT 5 cut(s) 12, 90, 105, 298, 350
TaqI TCGA 2 cut(s) 33, 255
TauI GCSGC 3 cut(s) 66, 69, 72
TfiI GAWTC 1 cut(s) 271
Tru1I TTAA 1 cut(s) 185
Tru9I TTAA 1 cut(s) 185
TscAI CASTG 1 cut(s) 231
TseI GCWGC 2 cut(s) 53, 246
TspDTI ATGAA 2 cut(s) 17, 353
TspGWI ACGGA 1 cut(s) 335
TspRI CASTG 1 cut(s) 231
Van91I CCANNNNNTGG 1 cut(s) 208
VspI ATTAAT 1 cut(s) 185
XmiI GTMKAC 1 cut(s) 344
XmnI GAANNNNTTC 1 cut(s) 26
ZraI GACGTC 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.