Rh7AG167900

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0013364
Physical Location & Seq
Forward (+)
14378971 .. 14380652
1682 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG167900.1

Sequence Viewer

Length: 441 bp
ATGAAGTACGTGAGGCCCTTGAACATGTTCCTGGATTTGCACAAGACCAGAGCTGTCCAACGCAGCGGCCGCTTGCTCGGTTTGGACGTCGGCGACAAGTACGTCGGCCTCGCCGTTTCCGACCTCGATAACAAAATCGCCTCCCCTTTAAGTGTTCTGCTTAGGAAGAAATCAACCCTGGACTTGATGGCCTCTGATTTCCAGAGCTTGGTGTCTAAGCTTTCTCTGGTGGGGTTCGTTGTTGGCTACCCTTTCGACAGACAGCGAGGCACTCCTGAAAATGTCGAATTACTGCTGAAGCCATTGAGTTTCCATCCGGTTCAGTCGAAGACAATTGTTGACAAGTTTGCTGCTGTTGGTATACTCCAGGGGTACCTGGATTATGTGAACAGGAAGTTGACGTTGGATCAAAAGCCATCACCTTTGCTGAACTCCTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RuvX

Protein Analysis

146

Amino Acids

16.25

Weight (kDa)

9.73

Isoelectric Point (pI)

31.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RuvX PF03652 24 - 89 2.2e-12 Holliday junction resolvase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013364)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52905
fragaria_vesca FvH4_5g02300 FvH4_5g02300 FvH4_5g02300
malus_domestica MD14G1103600.v1.1
prunus_persica Prupe.5G098900_v2.0.a1
pyrus_communis pycom14g09950
rosa_chinensis RchiOBHm_Chr7g0197851
rosa_laevigata RLG00000003905
rosa_roxburghii Rroxscaffold_3G00258140
rosa_rugosa Rorug07G0044000
rosa_samantha Rh7AG167900 Rh7AG168000 Rh7BG170800 Rh7CG177200 Rh7CG177300 Rh7DG169700
rosa_wichuraiana Rw7G014630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 101
AatII GACGTC 1 cut(s) 90
Acc65I GGTACC 1 cut(s) 372
AccB1I GGYRCC 1 cut(s) 372
AccB7I CCANNNNNTGG 1 cut(s) 208
AccI GTMKAC 1 cut(s) 361
AciI CCGC 2 cut(s) 66, 70
AclWI GGATC 1 cut(s) 414
AcoI YGGCCR 1 cut(s) 67
AcuI CTGAAG 1 cut(s) 317
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 3 cut(s) 8, 101, 374
AfiI CCNNNNNNNGG 1 cut(s) 208
AflIII ACRYGT 1 cut(s) 24
AgsI TTSAA 1 cut(s) 22
AjnI CCWGG 4 cut(s) 30, 177, 366, 375
AjuI GAANNNNNNNTTGG 2 cut(s) 386, 418
AluBI AGCT 3 cut(s) 53, 207, 220
AluI AGCT 3 cut(s) 53, 207, 220
AlwI GGATC 1 cut(s) 414
AoxI GGCC 4 cut(s) 14, 67, 106, 189
ApeKI GCWGC 2 cut(s) 63, 350
Asp700I GAANNNNTTC 1 cut(s) 26
Asp718I GGTACC 1 cut(s) 372
AspS9I GGNCC 1 cut(s) 15
AsuHPI GGTGA 1 cut(s) 411
BanI GGYRCC 1 cut(s) 372
BauI CACGAG 1 cut(s) 436
BbsI GAAGAC 1 cut(s) 335
BbvI GCAGC 2 cut(s) 75, 337
BccI CCATC 3 cut(s) 181, 321, 424
BceAI ACGGC 1 cut(s) 98
BciT130I CCWGG 4 cut(s) 32, 179, 368, 377
BisI GCNGC 4 cut(s) 64, 67, 70, 351
BlsI GCNGC 4 cut(s) 65, 68, 71, 352
Bme1390I CCNGG 4 cut(s) 32, 179, 368, 377
BmgT120I GGNCC 1 cut(s) 15
BmiI GGNNCC 1 cut(s) 374
BmrFI CCNGG 4 cut(s) 32, 179, 368, 377
BpiI GAAGAC 1 cut(s) 335
BpmI CTGGAG 1 cut(s) 350
Bpu10I CCTNAGC 1 cut(s) 161
BsaAI YACGTR 1 cut(s) 10
BsaHI GRCGYC 1 cut(s) 87
BsaJI CCNNGG 2 cut(s) 177, 367
BsaWI WCCGGW 1 cut(s) 316
Bsc4I CCNNNNNNNGG 1 cut(s) 208
BseBI CCWGG 4 cut(s) 32, 179, 368, 377
BseDI CCNNGG 2 cut(s) 177, 367
BseGI GGATG 1 cut(s) 313
BseLI CCNNNNNNNGG 1 cut(s) 208
BseRI GAGGAG 1 cut(s) 424
BseX3I CGGCCG 1 cut(s) 67
BseXI GCAGC 2 cut(s) 75, 337
Bsh1285I CGRYCG 1 cut(s) 70
BshFI GGCC 4 cut(s) 16, 69, 108, 191
BshNI GGYRCC 1 cut(s) 372
BsiEI CGRYCG 1 cut(s) 70
BsiSI CCGG 1 cut(s) 317
BslI CCNNNNNNNGG 1 cut(s) 208
BsnI GGCC 4 cut(s) 16, 69, 108, 191
Bsp143I GATC 1 cut(s) 406
BspACI CCGC 2 cut(s) 66, 70
BspANI GGCC 4 cut(s) 16, 69, 108, 191
BspLI GGNNCC 1 cut(s) 374
BspPI GGATC 1 cut(s) 414
BspT107I GGYRCC 1 cut(s) 372
BssECI CCNNGG 2 cut(s) 177, 367
BssMI GATC 1 cut(s) 406
BssNAI GTATAC 1 cut(s) 362
BssNI GRCGYC 1 cut(s) 87
BssSI CACGAG 1 cut(s) 436
Bst1107I GTATAC 1 cut(s) 362
Bst2BI CACGAG 1 cut(s) 436
Bst2UI CCWGG 4 cut(s) 32, 179, 368, 377
BstACI GRCGYC 1 cut(s) 87
BstBAI YACGTR 1 cut(s) 10
BstC8I GCNNGC 1 cut(s) 74
BstDEI CTNAG 2 cut(s) 161, 216
BstF5I GGATG 1 cut(s) 313
BstKTI GATC 1 cut(s) 409
BstMBI GATC 1 cut(s) 406
BstMCI CGRYCG 1 cut(s) 70
BstMWI GCNNNNNNNGC 1 cut(s) 69
BstNI CCWGG 4 cut(s) 32, 179, 368, 377
BstNSI RCATGY 1 cut(s) 28
BstSCI CCNGG 4 cut(s) 30, 177, 366, 375
BstV1I GCAGC 2 cut(s) 75, 337
BstV2I GAAGAC 1 cut(s) 335
BstZ17I GTATAC 1 cut(s) 362
BstZI CGGCCG 1 cut(s) 67
BsuRI GGCC 4 cut(s) 16, 69, 108, 191
BtsCI GGATG 1 cut(s) 313
Cac8I GCNNGC 1 cut(s) 74
CciNI GCGGCCGC 1 cut(s) 67
Cfr13I GGNCC 1 cut(s) 15
Csp6I GTAC 3 cut(s) 7, 100, 373
CviAII CATG 1 cut(s) 25
CviQI GTAC 3 cut(s) 7, 100, 373
DdeI CTNAG 2 cut(s) 161, 216
DpnI GATC 1 cut(s) 408
DpnII GATC 1 cut(s) 406
DrdI GACNNNNNNGTC 1 cut(s) 101
DseDI GACNNNNNNGTC 1 cut(s) 101
EaeI YGGCCR 1 cut(s) 67
EagI CGGCCG 1 cut(s) 67
EclXI CGGCCG 1 cut(s) 67
Eco52I CGGCCG 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 317
EcoO109I RGGNCCY 1 cut(s) 15
EcoRII CCWGG 4 cut(s) 30, 177, 366, 375
FaeI CATG 1 cut(s) 28
FaiI YATR 3 cut(s) 26, 362, 384
FatI CATG 1 cut(s) 24
FblI GTMKAC 1 cut(s) 361
Fnu4HI GCNGC 4 cut(s) 64, 67, 70, 351
FokI GGATG 1 cut(s) 300
Fsp4HI GCNGC 4 cut(s) 64, 67, 70, 351
GluI GCNGC 4 cut(s) 64, 67, 70, 351
GsuI CTGGAG 1 cut(s) 350
HaeIII GGCC 4 cut(s) 16, 69, 108, 191
HapII CCGG 1 cut(s) 317
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 1 cut(s) 28
HincII GTYRAC 2 cut(s) 340, 399
HindII GTYRAC 2 cut(s) 340, 399
HindIII AAGCTT 1 cut(s) 218
HpaII CCGG 1 cut(s) 317
HphI GGTGA 1 cut(s) 411
Hpy166II GTNNAC 4 cut(s) 340, 362, 388, 399
Hpy188I TCNGA 2 cut(s) 121, 196
Hpy188III TCNNGA 3 cut(s) 202, 275, 438
Hpy8I GTNNAC 4 cut(s) 340, 362, 388, 399
Hpy99I CGWCG 2 cut(s) 92, 107
HpyCH4IV ACGT 4 cut(s) 9, 87, 102, 401
HpyCH4V TGCA 1 cut(s) 40
HpyF10VI GCNNNNNNNGC 1 cut(s) 69
HpyF3I CTNAG 2 cut(s) 161, 216
HpySE526I ACGT 4 cut(s) 9, 87, 102, 401
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 1 cut(s) 28
KpnI GGTACC 1 cut(s) 376
Kzo9I GATC 1 cut(s) 406
Lsp1109I GCAGC 2 cut(s) 75, 337
MaeII ACGT 4 cut(s) 9, 87, 102, 401
MalI GATC 1 cut(s) 408
MboI GATC 1 cut(s) 406
MboII GAAGA 2 cut(s) 178, 340
MfeI CAATTG 1 cut(s) 333
MluCI AATT 2 cut(s) 287, 333
MmeI TCCRAC 3 cut(s) 82, 144, 384
MnlI CCTC 6 cut(s) 6, 119, 134, 151, 202, 260
MroXI GAANNNNTTC 1 cut(s) 26
MseI TTAA 1 cut(s) 149
MspA1I CMGCKG 1 cut(s) 66
MspI CCGG 1 cut(s) 317
MspR9I CCNGG 4 cut(s) 32, 179, 368, 377
MunI CAATTG 1 cut(s) 333
MvaI CCWGG 4 cut(s) 32, 179, 368, 377
MwoI GCNNNNNNNGC 1 cut(s) 69
NdeII GATC 1 cut(s) 406
NlaIII CATG 1 cut(s) 28
NlaIV GGNNCC 1 cut(s) 374
NotI GCGGCCGC 1 cut(s) 67
NspI RCATGY 1 cut(s) 28
PciI ACATGT 1 cut(s) 24
PcsI WCGNNNNNNNCGW 3 cut(s) 84, 111, 117
PdmI GAANNNNTTC 1 cut(s) 26
PflMI CCANNNNNTGG 1 cut(s) 208
PfoI TCCNGGA 1 cut(s) 30
PkrI GCNGC 4 cut(s) 65, 68, 71, 352
Ppu21I YACGTR 1 cut(s) 10
PscI ACATGT 1 cut(s) 24
Psp6I CCWGG 4 cut(s) 30, 177, 366, 375
PspGI CCWGG 4 cut(s) 30, 177, 366, 375
PspN4I GGNNCC 1 cut(s) 374
PspPI GGNCC 1 cut(s) 15
RsaI GTAC 3 cut(s) 8, 101, 374
RsaNI GTAC 3 cut(s) 7, 100, 373
SaqAI TTAA 1 cut(s) 149
SatI GCNGC 4 cut(s) 64, 67, 70, 351
Sau3AI GATC 1 cut(s) 406
Sau96I GGNCC 1 cut(s) 15
ScrFI CCNGG 4 cut(s) 32, 179, 368, 377
Sse9I AATT 2 cut(s) 287, 333
SsiI CCGC 2 cut(s) 66, 70
StyD4I CCNGG 4 cut(s) 30, 177, 366, 375
TaiI ACGT 4 cut(s) 12, 90, 105, 404
TaqI TCGA 4 cut(s) 126, 255, 285, 326
TasI AATT 2 cut(s) 287, 333
TauI GCSGC 2 cut(s) 69, 72
Tru1I TTAA 1 cut(s) 149
Tru9I TTAA 1 cut(s) 149
TseI GCWGC 2 cut(s) 63, 350
TspDTI ATGAA 1 cut(s) 17
Van91I CCANNNNNTGG 1 cut(s) 208
XceI RCATGY 1 cut(s) 28
XmiI GTMKAC 1 cut(s) 361
XmnI GAANNNNTTC 1 cut(s) 26
ZraI GACGTC 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.