Rh7CG177200

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0013364
Physical Location & Seq
Forward (+)
15139462 .. 15141376
1915 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG177200.1

Sequence Viewer

Length: 387 bp
ATGAAGTACGTGAGGCCCTTGAACATGTTCCTGGATTTGCACAAGACCAAAGCTGTCCAACGCAGCGGCCGCTTGCTCGGTTTGGACGTCGGCGACAAGTACGTCGGCCTCGCCGTTTCCGACCTCGATAACAAAACCGCCTCCCCTTTAAGTGTTCTGCTTAGGAAGAAATCAACCCTGGACTTGATGGCTTCTGATTTCCAGAACTTGGTGTCAAAGCTTTCTCTGGTGGGGTTCGTTGTTGGCTACCCTTTCGACAGACAGCGAGGCACTCCTGAAGTGTGCATTCTTAACCTGAGTTATCTATATGGACACTCAATTTTTTTCTCTGCGTCAGCTGATTTGCTTCTGTTTGTGTTAGGCTGTCCAAGTGAAGCTTCTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RuvX

Protein Analysis

128

Amino Acids

14.09

Weight (kDa)

8.58

Isoelectric Point (pI)

28.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RuvX PF03652 24 - 87 1.5e-12 Holliday junction resolvase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013364)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52905
fragaria_vesca FvH4_5g02300 FvH4_5g02300 FvH4_5g02300
malus_domestica MD14G1103600.v1.1
prunus_persica Prupe.5G098900_v2.0.a1
pyrus_communis pycom14g09950
rosa_chinensis RchiOBHm_Chr7g0197851
rosa_laevigata RLG00000003905
rosa_roxburghii Rroxscaffold_3G00258140
rosa_rugosa Rorug07G0044000
rosa_samantha Rh7AG167900 Rh7AG168000 Rh7BG170800 Rh7CG177200 Rh7CG177300 Rh7DG169700
rosa_wichuraiana Rw7G014630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 101
AatII GACGTC 1 cut(s) 90
AccB7I CCANNNNNTGG 1 cut(s) 208
AciI CCGC 3 cut(s) 66, 70, 138
AcoI YGGCCR 1 cut(s) 67
AcuI CTGAAG 1 cut(s) 297
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 2 cut(s) 8, 101
AfiI CCNNNNNNNGG 1 cut(s) 208
AflIII ACRYGT 1 cut(s) 24
AgsI TTSAA 1 cut(s) 22
AjnI CCWGG 2 cut(s) 30, 177
AjuI GAANNNNNNNTTGG 1 cut(s) 361
AluBI AGCT 4 cut(s) 53, 220, 338, 377
AluI AGCT 4 cut(s) 53, 220, 338, 377
AoxI GGCC 3 cut(s) 14, 67, 106
ApeKI GCWGC 1 cut(s) 63
Asp700I GAANNNNTTC 1 cut(s) 26
AspS9I GGNCC 1 cut(s) 15
BbvI GCAGC 1 cut(s) 75
BccI CCATC 1 cut(s) 181
BceAI ACGGC 1 cut(s) 98
BciT130I CCWGG 2 cut(s) 32, 179
BisI GCNGC 3 cut(s) 64, 67, 70
BlsI GCNGC 3 cut(s) 65, 68, 71
Bme1390I CCNGG 2 cut(s) 32, 179
BmgT120I GGNCC 1 cut(s) 15
BmrFI CCNGG 2 cut(s) 32, 179
Bpu10I CCTNAGC 1 cut(s) 161
BsaAI YACGTR 1 cut(s) 10
BsaHI GRCGYC 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 177
Bsc4I CCNNNNNNNGG 1 cut(s) 208
BseBI CCWGG 2 cut(s) 32, 179
BseDI CCNNGG 1 cut(s) 177
BseLI CCNNNNNNNGG 1 cut(s) 208
BseMII CTCAG 1 cut(s) 287
BseX3I CGGCCG 1 cut(s) 67
BseXI GCAGC 1 cut(s) 75
Bsh1285I CGRYCG 1 cut(s) 70
BshFI GGCC 3 cut(s) 16, 69, 108
BsiEI CGRYCG 1 cut(s) 70
BslI CCNNNNNNNGG 1 cut(s) 208
BsmI GAATGC 1 cut(s) 285
BsnI GGCC 3 cut(s) 16, 69, 108
BspACI CCGC 3 cut(s) 66, 70, 138
BspANI GGCC 3 cut(s) 16, 69, 108
BspCNI CTCAG 1 cut(s) 288
BssECI CCNNGG 1 cut(s) 177
BssNI GRCGYC 1 cut(s) 87
Bst2UI CCWGG 2 cut(s) 32, 179
BstACI GRCGYC 1 cut(s) 87
BstBAI YACGTR 1 cut(s) 10
BstC8I GCNNGC 1 cut(s) 74
BstDEI CTNAG 2 cut(s) 161, 296
BstMCI CGRYCG 1 cut(s) 70
BstMWI GCNNNNNNNGC 1 cut(s) 69
BstNI CCWGG 2 cut(s) 32, 179
BstNSI RCATGY 1 cut(s) 28
BstSCI CCNGG 2 cut(s) 30, 177
BstV1I GCAGC 1 cut(s) 75
BstZI CGGCCG 1 cut(s) 67
BsuRI GGCC 3 cut(s) 16, 69, 108
Cac8I GCNNGC 1 cut(s) 74
CciNI GCGGCCGC 1 cut(s) 67
Cfr13I GGNCC 1 cut(s) 15
CseI GACGC 1 cut(s) 321
Csp6I GTAC 2 cut(s) 7, 100
CviAII CATG 1 cut(s) 25
CviQI GTAC 2 cut(s) 7, 100
DdeI CTNAG 2 cut(s) 161, 296
DrdI GACNNNNNNGTC 1 cut(s) 101
DseDI GACNNNNNNGTC 1 cut(s) 101
EaeI YGGCCR 1 cut(s) 67
EagI CGGCCG 1 cut(s) 67
EclXI CGGCCG 1 cut(s) 67
Eco52I CGGCCG 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 297
EcoO109I RGGNCCY 1 cut(s) 15
EcoRII CCWGG 2 cut(s) 30, 177
FaeI CATG 1 cut(s) 28
FaiI YATR 3 cut(s) 26, 307, 309
FalI AAGNNNNNCTT 1 cut(s) 361
FatI CATG 1 cut(s) 24
Fnu4HI GCNGC 3 cut(s) 64, 67, 70
Fsp4HI GCNGC 3 cut(s) 64, 67, 70
GluI GCNGC 3 cut(s) 64, 67, 70
HaeIII GGCC 3 cut(s) 16, 69, 108
HgaI GACGC 1 cut(s) 321
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 1 cut(s) 28
HindIII AAGCTT 2 cut(s) 218, 375
Hpy188I TCNGA 3 cut(s) 121, 196, 382
Hpy188III TCNNGA 2 cut(s) 202, 275
Hpy99I CGWCG 2 cut(s) 92, 107
HpyCH4IV ACGT 3 cut(s) 9, 87, 102
HpyCH4V TGCA 2 cut(s) 40, 285
HpyF10VI GCNNNNNNNGC 1 cut(s) 69
HpyF3I CTNAG 2 cut(s) 161, 296
HpySE526I ACGT 3 cut(s) 9, 87, 102
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 1 cut(s) 28
LpnPI CCDG 8 cut(s) 17, 44, 164, 191, 212, 215, 288, 308
Lsp1109I GCAGC 1 cut(s) 75
MaeII ACGT 3 cut(s) 9, 87, 102
MboII GAAGA 1 cut(s) 178
MluCI AATT 1 cut(s) 318
MmeI TCCRAC 2 cut(s) 82, 144
MnlI CCTC 5 cut(s) 6, 119, 134, 151, 260
MroXI GAANNNNTTC 1 cut(s) 26
MseI TTAA 2 cut(s) 149, 291
MspA1I CMGCKG 2 cut(s) 66, 338
MspR9I CCNGG 2 cut(s) 32, 179
Mva1269I GAATGC 1 cut(s) 285
MvaI CCWGG 2 cut(s) 32, 179
MwoI GCNNNNNNNGC 1 cut(s) 69
NlaIII CATG 1 cut(s) 28
NotI GCGGCCGC 1 cut(s) 67
NspI RCATGY 1 cut(s) 28
PciI ACATGT 1 cut(s) 24
PcsI WCGNNNNNNNCGW 3 cut(s) 84, 111, 117
PctI GAATGC 1 cut(s) 285
PdmI GAANNNNTTC 1 cut(s) 26
PflMI CCANNNNNTGG 1 cut(s) 208
PfoI TCCNGGA 1 cut(s) 30
PkrI GCNGC 3 cut(s) 65, 68, 71
Ppu21I YACGTR 1 cut(s) 10
PscI ACATGT 1 cut(s) 24
Psp6I CCWGG 2 cut(s) 30, 177
PspGI CCWGG 2 cut(s) 30, 177
PspPI GGNCC 1 cut(s) 15
PvuII CAGCTG 1 cut(s) 338
RsaI GTAC 2 cut(s) 8, 101
RsaNI GTAC 2 cut(s) 7, 100
SaqAI TTAA 2 cut(s) 149, 291
SatI GCNGC 3 cut(s) 64, 67, 70
Sau96I GGNCC 1 cut(s) 15
ScrFI CCNGG 2 cut(s) 32, 179
SetI ASST 9 cut(s) 12, 55, 90, 105, 126, 222, 297, 340, 379
Sse9I AATT 1 cut(s) 318
SsiI CCGC 3 cut(s) 66, 70, 138
StyD4I CCNGG 2 cut(s) 30, 177
TaiI ACGT 3 cut(s) 12, 90, 105
TaqI TCGA 2 cut(s) 126, 255
TasI AATT 1 cut(s) 318
TauI GCSGC 2 cut(s) 69, 72
Tru1I TTAA 2 cut(s) 149, 291
Tru9I TTAA 2 cut(s) 149, 291
TseI GCWGC 1 cut(s) 63
TspDTI ATGAA 1 cut(s) 17
Van91I CCANNNNNTGG 1 cut(s) 208
XceI RCATGY 1 cut(s) 28
XmnI GAANNNNTTC 1 cut(s) 26
ZraI GACGTC 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.