Prupe.5G098900_v2.0.a1

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0013364
Physical Location & Seq
Reverse (-)
10708522 .. 10711146
2625 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G098900.1

Sequence Viewer

Length: 717 bp
ATGAGGTACGTAAAGCCTTTGAGCTTGTTCCAAGACTTGGTTAGGGGCAATGCTCTCGAACGTGGGCGTTTGCTTGGTTTGGACGTCGGCGACAAGTACGTCGGCGTAGCTGTTTCAGACATTCATAACAAGATTGCTTCACCTTTAAGCGTTCTGCTTCGGAAGAAATCAACACTTGATATGATGGCCGATGATTTTCAGAGTTTGATCTCTGAACTTTCTCTGGAGGGCTTCATTGTTGGATACCCTTTCGACAGACAGAGACGCAGTCCTGATGCTGTCCAAGTGAAGCTTTTCATTGATGACCTCTCTGCGACAAGAAAACTTGAAGGCTTAAAATATACGTATTGGGATGAGGGCTTTACATCAAAGAATGTGGAATTACTCTTAAGGCCTTTGAATTTGCATCCAGTTACGTCCAAGACAATTATTGACAAGTTTGCTGCTGTTGGTATACTCCAGGGGTACCTGGATTATGTTAATAGGAAGCAGAAGTCTGTAACCGCTCAGAACTTTGGAGACCAGCCTTTGATGTGTGGATCGTTTCTTTGTGAATTGAACATGAATTTATGTGCACCTGTGTGCTTAACTTTTTTTATCTTCTTCTTTAACTTTGGAGGAACAAATTGTGGAAACACACATGCTTTATTTGAAGGGACAATATATTCCCCTCATGCATTCATAGTCTCATTACCGAGTTTCAAGCCCTTCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RuvX

Protein Analysis

239

Amino Acids

26.7

Weight (kDa)

8.22

Isoelectric Point (pI)

26.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013364)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52905
fragaria_vesca FvH4_5g02300 FvH4_5g02300 FvH4_5g02300
malus_domestica MD14G1103600.v1.1
prunus_persica Prupe.5G098900_v2.0.a1
pyrus_communis pycom14g09950
rosa_chinensis RchiOBHm_Chr7g0197851
rosa_laevigata RLG00000003905
rosa_roxburghii Rroxscaffold_3G00258140
rosa_rugosa Rorug07G0044000
rosa_samantha Rh7AG167900 Rh7AG168000 Rh7BG170800 Rh7CG177200 Rh7CG177300 Rh7DG169700
rosa_wichuraiana Rw7G014630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 98
AatII GACGTC 1 cut(s) 87
Acc65I GGTACC 1 cut(s) 465
AccB1I GGYRCC 1 cut(s) 465
AccB7I CCANNNNNTGG 1 cut(s) 37
AccBSI CCGCTC 1 cut(s) 506
AccI GTMKAC 1 cut(s) 454
AciI CCGC 1 cut(s) 504
AclWI GGATC 1 cut(s) 547
AcoI YGGCCR 1 cut(s) 186
AcsI RAATTY 2 cut(s) 400, 565
AcyI GRCGYC 1 cut(s) 84
AfaI GTAC 3 cut(s) 8, 98, 467
AfiI CCNNNNNNNGG 1 cut(s) 37
AflII CTTAAG 1 cut(s) 388
AgsI TTSAA 5 cut(s) 329, 400, 559, 653, 703
AjnI CCWGG 2 cut(s) 459, 468
AleI CACNNNNGTG 1 cut(s) 580
AluBI AGCT 3 cut(s) 24, 110, 292
AluI AGCT 3 cut(s) 24, 110, 292
Alw21I GWGCWC 1 cut(s) 577
Alw26I GTCTC 3 cut(s) 256, 513, 691
Alw44I GTGCAC 1 cut(s) 573
AlwI GGATC 1 cut(s) 547
AoxI GGCC 2 cut(s) 186, 392
ApaLI GTGCAC 1 cut(s) 573
ApeKI GCWGC 1 cut(s) 443
ApoI RAATTY 2 cut(s) 400, 565
Asp700I GAANNNNTTC 1 cut(s) 293
Asp718I GGTACC 1 cut(s) 465
AsuHPI GGTGA 1 cut(s) 132
BaeGI GKGCMC 1 cut(s) 577
BanI GGYRCC 1 cut(s) 465
Bbv12I GWGCWC 1 cut(s) 577
BbvI GCAGC 1 cut(s) 430
BccI CCATC 1 cut(s) 178
BcgI CGANNNNNNTGC 2 cut(s) 37, 71
BciT130I CCWGG 2 cut(s) 461, 470
BciVI GTATCC 1 cut(s) 236
BcoDI GTCTC 3 cut(s) 256, 513, 691
BfrI CTTAAG 1 cut(s) 388
BfuI GTATCC 1 cut(s) 236
BisI GCNGC 1 cut(s) 444
BlsI GCNGC 1 cut(s) 445
Bme1390I CCNGG 2 cut(s) 461, 470
BmiI GGNNCC 1 cut(s) 467
BmrFI CCNGG 2 cut(s) 461, 470
BmsI GCATC 2 cut(s) 265, 415
BpmI CTGGAG 2 cut(s) 245, 443
BsaAI YACGTR 2 cut(s) 10, 345
BsaHI GRCGYC 1 cut(s) 84
BsaI GGTCTC 1 cut(s) 513
BsaJI CCNNGG 1 cut(s) 460
Bsc4I CCNNNNNNNGG 1 cut(s) 37
Bse1I ACTGG 1 cut(s) 410
Bse3DI GCAATG 1 cut(s) 55
BseBI CCWGG 2 cut(s) 461, 470
BseDI CCNNGG 1 cut(s) 460
BseGI GGATG 2 cut(s) 358, 406
BseLI CCNNNNNNNGG 1 cut(s) 37
BseMI GCAATG 1 cut(s) 55
BseMII CTCAG 1 cut(s) 521
BseNI ACTGG 1 cut(s) 410
BseSI GKGCMC 1 cut(s) 577
BseXI GCAGC 1 cut(s) 430
BshFI GGCC 2 cut(s) 188, 394
BshNI GGYRCC 1 cut(s) 465
BsiHKAI GWGCWC 1 cut(s) 577
BslFI GGGAC 1 cut(s) 670
BslI CCNNNNNNNGG 1 cut(s) 37
BsmAI GTCTC 3 cut(s) 256, 513, 691
BsmBI CGTCTC 1 cut(s) 256
BsmFI GGGAC 1 cut(s) 670
BsmI GAATGC 1 cut(s) 677
BsnI GGCC 2 cut(s) 188, 394
Bso31I GGTCTC 1 cut(s) 513
Bsp1286I GDGCHC 1 cut(s) 577
Bsp143I GATC 2 cut(s) 207, 539
BspACI CCGC 1 cut(s) 504
BspANI GGCC 2 cut(s) 188, 394
BspCNI CTCAG 1 cut(s) 520
BspLI GGNNCC 1 cut(s) 467
BspPI GGATC 1 cut(s) 547
BspT107I GGYRCC 1 cut(s) 465
BspTI CTTAAG 1 cut(s) 388
BspTNI GGTCTC 1 cut(s) 513
BsrBI CCGCTC 1 cut(s) 506
BsrDI GCAATG 1 cut(s) 55
BsrI ACTGG 1 cut(s) 410
BssECI CCNNGG 1 cut(s) 460
BssMI GATC 2 cut(s) 207, 539
BssNAI GTATAC 1 cut(s) 455
BssNI GRCGYC 1 cut(s) 84
Bst1107I GTATAC 1 cut(s) 455
Bst2UI CCWGG 2 cut(s) 461, 470
BstACI GRCGYC 1 cut(s) 84
BstAFI CTTAAG 1 cut(s) 388
BstBAI YACGTR 2 cut(s) 10, 345
BstDEI CTNAG 1 cut(s) 507
BstF5I GGATG 2 cut(s) 358, 406
BstKTI GATC 2 cut(s) 210, 542
BstMAI GTCTC 3 cut(s) 256, 513, 691
BstMBI GATC 2 cut(s) 207, 539
BstNI CCWGG 2 cut(s) 461, 470
BstNSI RCATGY 1 cut(s) 644
BstSCI CCNGG 2 cut(s) 459, 468
BstSLI GKGCMC 1 cut(s) 577
BstSNI TACGTA 2 cut(s) 10, 345
BstV1I GCAGC 1 cut(s) 430
BstZ17I GTATAC 1 cut(s) 455
BsuI GTATCC 1 cut(s) 236
BsuRI GGCC 2 cut(s) 188, 394
BtsCI GGATG 2 cut(s) 358, 406
CseI GACGC 1 cut(s) 273
Csp6I GTAC 3 cut(s) 7, 97, 466
CspCI CAANNNNNGTGG 2 cut(s) 357, 392
CviAII CATG 3 cut(s) 562, 641, 674
CviQI GTAC 3 cut(s) 7, 97, 466
DdeI CTNAG 1 cut(s) 507
DpnI GATC 2 cut(s) 209, 541
DpnII GATC 2 cut(s) 207, 539
DrdI GACNNNNNNGTC 1 cut(s) 98
DseDI GACNNNNNNGTC 1 cut(s) 98
EaeI YGGCCR 1 cut(s) 186
Eco105I TACGTA 2 cut(s) 10, 345
Eco147I AGGCCT 1 cut(s) 394
Eco31I GGTCTC 1 cut(s) 513
EcoRII CCWGG 2 cut(s) 459, 468
EcoT22I ATGCAT 1 cut(s) 679
Esp3I CGTCTC 1 cut(s) 256
FaeI CATG 3 cut(s) 565, 644, 677
FalI AAGNNNNNCTT 2 cut(s) 276, 308
FaqI GGGAC 1 cut(s) 670
FatI CATG 3 cut(s) 561, 640, 673
FblI GTMKAC 1 cut(s) 454
Fnu4HI GCNGC 1 cut(s) 444
FokI GGATG 2 cut(s) 365, 393
Fsp4HI GCNGC 1 cut(s) 444
GluI GCNGC 1 cut(s) 444
GsuI CTGGAG 2 cut(s) 245, 443
HaeIII GGCC 2 cut(s) 188, 394
HgaI GACGC 1 cut(s) 273
Hin1I GRCGYC 1 cut(s) 84
Hin1II CATG 3 cut(s) 565, 644, 677
HindIII AAGCTT 1 cut(s) 290
HphI GGTGA 1 cut(s) 132
Hpy166II GTNNAC 2 cut(s) 455, 575
Hpy188I TCNGA 5 cut(s) 118, 162, 201, 214, 510
Hpy188III TCNNGA 3 cut(s) 56, 224, 272
Hpy8I GTNNAC 2 cut(s) 455, 575
Hpy99I CGWCG 2 cut(s) 89, 104
HpyAV CCTTC 2 cut(s) 323, 647
HpyCH4IV ACGT 6 cut(s) 9, 61, 84, 99, 344, 416
HpyCH4V TGCA 3 cut(s) 406, 575, 677
HpyF3I CTNAG 1 cut(s) 507
HpySE526I ACGT 6 cut(s) 9, 61, 84, 99, 344, 416
Hsp92I GRCGYC 1 cut(s) 84
Hsp92II CATG 3 cut(s) 565, 644, 677
KpnI GGTACC 1 cut(s) 469
Kzo9I GATC 2 cut(s) 207, 539
LpnPI CCDG 9 cut(s) 209, 285, 423, 446, 455, 473, 482, 536, 591
Lsp1109I GCAGC 1 cut(s) 430
LweI GCATC 2 cut(s) 265, 415
MaeII ACGT 6 cut(s) 9, 61, 84, 99, 344, 416
MaeIII GTNAC 2 cut(s) 412, 499
MalI GATC 2 cut(s) 209, 541
MbiI CCGCTC 1 cut(s) 506
MboI GATC 2 cut(s) 207, 539
MboII GAAGA 3 cut(s) 175, 592, 595
MhlI GDGCHC 1 cut(s) 577
MluCI AATT 6 cut(s) 380, 400, 426, 554, 565, 625
MmeI TCCRAC 1 cut(s) 220
MnlI CCTC 5 cut(s) 220, 317, 349, 611, 681
Mph1103I ATGCAT 1 cut(s) 679
MroXI GAANNNNTTC 1 cut(s) 293
MseI TTAA 7 cut(s) 146, 335, 389, 480, 587, 609, 715
MslI CAYNNNNRTG 1 cut(s) 580
MspCI CTTAAG 1 cut(s) 388
MspR9I CCNGG 2 cut(s) 461, 470
Mva1269I GAATGC 1 cut(s) 677
MvaI CCWGG 2 cut(s) 461, 470
NdeII GATC 2 cut(s) 207, 539
NlaIII CATG 3 cut(s) 565, 644, 677
NlaIV GGNNCC 1 cut(s) 467
NsiI ATGCAT 1 cut(s) 679
NspI RCATGY 1 cut(s) 644
OliI CACNNNNGTG 1 cut(s) 580
PceI AGGCCT 1 cut(s) 394
PctI GAATGC 1 cut(s) 677
PdmI GAANNNNTTC 1 cut(s) 293
PflFI GACNNNGTC 1 cut(s) 267
PflMI CCANNNNNTGG 1 cut(s) 37
PkrI GCNGC 1 cut(s) 445
Ppu21I YACGTR 2 cut(s) 10, 345
Psp6I CCWGG 2 cut(s) 459, 468
PspGI CCWGG 2 cut(s) 459, 468
PspN4I GGNNCC 1 cut(s) 467
PsyI GACNNNGTC 1 cut(s) 267
RsaI GTAC 3 cut(s) 8, 98, 467
RsaNI GTAC 3 cut(s) 7, 97, 466
RseI CAYNNNNRTG 1 cut(s) 580
SaqAI TTAA 7 cut(s) 146, 335, 389, 480, 587, 609, 715
SatI GCNGC 1 cut(s) 444
Sau3AI GATC 2 cut(s) 207, 539
ScrFI CCNGG 2 cut(s) 461, 470
SduI GDGCHC 1 cut(s) 577
SfaNI GCATC 2 cut(s) 265, 415
SmiMI CAYNNNNRTG 1 cut(s) 580
SmlI CTYRAG 1 cut(s) 388
SmoI CTYRAG 1 cut(s) 388
SnaBI TACGTA 2 cut(s) 10, 345
Sse9I AATT 6 cut(s) 380, 400, 426, 554, 565, 625
SseBI AGGCCT 1 cut(s) 394
SsiI CCGC 1 cut(s) 504
StuI AGGCCT 1 cut(s) 394
StyD4I CCNGG 2 cut(s) 459, 468
TaiI ACGT 6 cut(s) 12, 64, 87, 102, 347, 419
TaqI TCGA 2 cut(s) 57, 252
TasI AATT 6 cut(s) 380, 400, 426, 554, 565, 625
Tru1I TTAA 7 cut(s) 146, 335, 389, 480, 587, 609, 715
Tru9I TTAA 7 cut(s) 146, 335, 389, 480, 587, 609, 715
TseI GCWGC 1 cut(s) 443
TspDTI ATGAA 5 cut(s) 113, 223, 286, 578, 670
Tth111I GACNNNGTC 1 cut(s) 267
Van91I CCANNNNNTGG 1 cut(s) 37
Vha464I CTTAAG 1 cut(s) 388
VneI GTGCAC 1 cut(s) 573
XapI RAATTY 2 cut(s) 400, 565
XceI RCATGY 1 cut(s) 644
XmiI GTMKAC 1 cut(s) 454
XmnI GAANNNNTTC 1 cut(s) 293
ZraI GACGTC 1 cut(s) 85
Zsp2I ATGCAT 1 cut(s) 679
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.