Rh7BG170800

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0013364
Physical Location & Seq
Forward (+)
13316250 .. 13321956
5707 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG170800.1

Sequence Viewer

Length: 1149 bp
ATGAAGTACGTGAGGCCCTTGAACATGTTCCTGGATTTGCACAAGGCCAAAGCTCTCCAACGCGGCGGCGGCCGCTTGCTCGGTCTGGACGTCGGCGACAAGTACGTCGGCCTCGCCGTTTCCGACCTCGATAACAAAATCGCCTCCCCTTTAAGTGTTCTGCTTAGGAAGAAATCAACCCTGGAATTGATGGCCTCTGATTTCCAGAGCTTGGTGTCTAAGCTTTCTCTGGTGGGCTTCGTTGTTGGCTACCCTTTCGACAGACAGCGAGGCACTCCTGAAGCTGTCCAAGTGAAGCTTCTGATTGAGGATCTCTGTAAGACGAGAAAACTTGAAGGCATGAAGTATACGTATTGGGACGAGTGCTTTACTTCAAAGAATGTCGAATTACTGCTAAAGCCTTTGAGTTTCCATCCGGTTCAGTCAAAGACGATTGTTGACAAGTTTGCTGCTGTTGGTATACTCCAGGGGTACCTGGATTATGTGAACAGGAAGCTGACAACTAGCAGATATGAGTACATCACCATCACCACTGAACCACCAACAACAGCAGAAACGAGAATCGGCTCCCACCCATTTCAGATTTTTGCCGGAATTTGTGATGCTAAGTACCTGACAGTTAAAGCTCCAATTTTGACGGCCCTTGACATTGGAAATCAACGTCTTCTGCCTACATTGAATAATTTGAACCACTTGGAGCTGCAACTTGAAACTTGTCGATGTTTGCAATCACTGACAACTTGGCTCAAAATATCACCAAATTTGGAACATCTCAAGATATCACCAAATAGGGAACATCTTTGGTTTGCAGATGACTACAAATATTGTGATGATGACAATGAGGATGTTCTTGTACATGAATGGCGTGCACCAGAATTTGCAAACATTTGCTTGGTTTCACACCTCAAGACTGTTTGCCTATGGGATTTCAAGGGGTGTCCAAATGACATGGAAGTGGCAAAGTACTTGGTGAAGCATGGCAAGGCTTTGAATAAGGTGACTATTTATACTCACTTCAGTGAAGACAAAGAGATGGAGATACAGTCTCCCATCACCTTATGGTCGAAATTTTCAGAGTTCCTGAGGGGTTCCAAGACTTGTAAAATTCAATTTAAGACGATCGTTTCAGATTCTTCTTTGGGAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RuvX

Protein Analysis

382

Amino Acids

43.49

Weight (kDa)

8.39

Isoelectric Point (pI)

33.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RuvX PF03652 25 - 160 6.7e-25 Holliday junction resolvase
FBD PF08387 297 - 335 1.2e-10 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013364)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52905
fragaria_vesca FvH4_5g02300 FvH4_5g02300 FvH4_5g02300
malus_domestica MD14G1103600.v1.1
prunus_persica Prupe.5G098900_v2.0.a1
pyrus_communis pycom14g09950
rosa_chinensis RchiOBHm_Chr7g0197851
rosa_laevigata RLG00000003905
rosa_roxburghii Rroxscaffold_3G00258140
rosa_rugosa Rorug07G0044000
rosa_samantha Rh7AG167900 Rh7AG168000 Rh7BG170800 Rh7CG177200 Rh7CG177300 Rh7DG169700
rosa_wichuraiana Rw7G014630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 104
AatII GACGTC 1 cut(s) 93
Acc65I GGTACC 1 cut(s) 471
AccB1I GGYRCC 1 cut(s) 471
AccB7I CCANNNNNTGG 1 cut(s) 211
AccI GTMKAC 2 cut(s) 347, 460
AccII CGCG 1 cut(s) 63
AciI CCGC 4 cut(s) 63, 66, 69, 73
AclWI GGATC 1 cut(s) 318
AcoI YGGCCR 1 cut(s) 70
AcsI RAATTY 5 cut(s) 594, 760, 875, 1067, 1104
AcuI CTGAAG 2 cut(s) 300, 1000
AcyI GRCGYC 1 cut(s) 90
AfaI GTAC 7 cut(s) 8, 104, 473, 518, 611, 855, 965
AfiI CCNNNNNNNGG 1 cut(s) 211
AflIII ACRYGT 1 cut(s) 24
AgsI TTSAA 9 cut(s) 22, 335, 375, 679, 688, 710, 931, 991, 1109
AjnI CCWGG 4 cut(s) 30, 180, 465, 474
AjuI GAANNNNNNNTTGG 2 cut(s) 282, 314
AleI CACNNNNGTG 1 cut(s) 1017
AluBI AGCT 8 cut(s) 53, 210, 223, 284, 298, 496, 626, 700
AluI AGCT 8 cut(s) 53, 210, 223, 284, 298, 496, 626, 700
Alw21I GWGCWC 1 cut(s) 871
Alw26I GTCTC 1 cut(s) 1050
Alw44I GTGCAC 1 cut(s) 867
AlwI GGATC 1 cut(s) 318
AoxI GGCC 6 cut(s) 14, 45, 70, 109, 192, 639
ApaLI GTGCAC 1 cut(s) 867
ApeKI GCWGC 2 cut(s) 449, 700
ApoI RAATTY 5 cut(s) 594, 760, 875, 1067, 1104
Asp700I GAANNNNTTC 1 cut(s) 26
Asp718I GGTACC 1 cut(s) 471
AspS9I GGNCC 2 cut(s) 15, 640
AsuHPI GGTGA 7 cut(s) 514, 520, 747, 774, 982, 1009, 1045
AxyI CCTNAGG 1 cut(s) 1082
BaeGI GKGCMC 1 cut(s) 871
BanI GGYRCC 1 cut(s) 471
BbsI GAAGAC 2 cut(s) 656, 1029
Bbv12I GWGCWC 1 cut(s) 871
BbvI GCAGC 2 cut(s) 436, 687
BccI CCATC 5 cut(s) 184, 420, 533, 1027, 1058
BceAI ACGGC 2 cut(s) 101, 654
BciT130I CCWGG 4 cut(s) 32, 182, 467, 476
BcoDI GTCTC 1 cut(s) 1050
BfaI CTAG 1 cut(s) 504
BisI GCNGC 6 cut(s) 64, 67, 70, 73, 450, 701
BlsI GCNGC 6 cut(s) 65, 68, 71, 74, 451, 702
BmcAI AGTACT 1 cut(s) 965
Bme1390I CCNGG 4 cut(s) 32, 182, 467, 476
BmgT120I GGNCC 2 cut(s) 15, 640
BmiI GGNNCC 3 cut(s) 473, 568, 1090
BmrFI CCNGG 4 cut(s) 32, 182, 467, 476
BmsI GCATC 1 cut(s) 592
BpiI GAAGAC 2 cut(s) 656, 1029
BpmI CTGGAG 1 cut(s) 449
Bpu10I CCTNAGC 1 cut(s) 164
BpuEI CTTGAG 2 cut(s) 758, 890
BsaAI YACGTR 2 cut(s) 10, 351
BsaHI GRCGYC 1 cut(s) 90
BsaJI CCNNGG 2 cut(s) 180, 466
BsaWI WCCGGW 1 cut(s) 415
BsaXI ACNNNNNCTCC 2 cut(s) 1028, 1058
Bsc4I CCNNNNNNNGG 1 cut(s) 211
Bse21I CCTNAGG 1 cut(s) 1082
BseBI CCWGG 4 cut(s) 32, 182, 467, 476
BseDI CCNNGG 2 cut(s) 180, 466
BseGI GGATG 2 cut(s) 412, 850
BseLI CCNNNNNNNGG 1 cut(s) 211
BseMII CTCAG 1 cut(s) 1073
BseSI GKGCMC 1 cut(s) 871
BseX3I CGGCCG 1 cut(s) 70
BseXI GCAGC 2 cut(s) 436, 687
Bsh1236I CGCG 1 cut(s) 63
Bsh1285I CGRYCG 2 cut(s) 73, 1122
BshFI GGCC 6 cut(s) 16, 47, 72, 111, 194, 641
BshNI GGYRCC 1 cut(s) 471
BsiEI CGRYCG 2 cut(s) 73, 1122
BsiHKAI GWGCWC 1 cut(s) 871
BsiSI CCGG 2 cut(s) 416, 591
BslFI GGGAC 1 cut(s) 371
BslI CCNNNNNNNGG 1 cut(s) 211
BsmAI GTCTC 1 cut(s) 1050
BsmFI GGGAC 1 cut(s) 371
BsnI GGCC 6 cut(s) 16, 47, 72, 111, 194, 641
Bsp1286I GDGCHC 1 cut(s) 871
Bsp1407I TGTACA 1 cut(s) 853
Bsp143I GATC 2 cut(s) 310, 1119
BspACI CCGC 4 cut(s) 63, 66, 69, 73
BspANI GGCC 6 cut(s) 16, 47, 72, 111, 194, 641
BspCNI CTCAG 1 cut(s) 1074
BspFNI CGCG 1 cut(s) 63
BspLI GGNNCC 3 cut(s) 473, 568, 1090
BspPI GGATC 1 cut(s) 318
BspT107I GGYRCC 1 cut(s) 471
BsrGI TGTACA 1 cut(s) 853
BssECI CCNNGG 2 cut(s) 180, 466
BssMI GATC 2 cut(s) 310, 1119
BssNAI GTATAC 2 cut(s) 348, 461
BssNI GRCGYC 1 cut(s) 90
Bst1107I GTATAC 2 cut(s) 348, 461
Bst2UI CCWGG 4 cut(s) 32, 182, 467, 476
Bst4CI ACNGT 3 cut(s) 619, 913, 1044
BstACI GRCGYC 1 cut(s) 90
BstAUI TGTACA 1 cut(s) 853
BstBAI YACGTR 2 cut(s) 10, 351
BstC8I GCNNGC 2 cut(s) 77, 867
BstDEI CTNAG 4 cut(s) 164, 219, 606, 1082
BstF5I GGATG 2 cut(s) 412, 850
BstFNI CGCG 1 cut(s) 63
BstKTI GATC 2 cut(s) 313, 1122
BstMAI GTCTC 1 cut(s) 1050
BstMBI GATC 2 cut(s) 310, 1119
BstMCI CGRYCG 2 cut(s) 73, 1122
BstMWI GCNNNNNNNGC 2 cut(s) 69, 72
BstNI CCWGG 4 cut(s) 32, 182, 467, 476
BstNSI RCATGY 1 cut(s) 28
BstSCI CCNGG 4 cut(s) 30, 180, 465, 474
BstSLI GKGCMC 1 cut(s) 871
BstSNI TACGTA 1 cut(s) 351
BstUI CGCG 1 cut(s) 63
BstV1I GCAGC 2 cut(s) 436, 687
BstV2I GAAGAC 2 cut(s) 656, 1029
BstX2I RGATCY 1 cut(s) 310
BstYI RGATCY 1 cut(s) 310
BstZ17I GTATAC 2 cut(s) 348, 461
BstZI CGGCCG 1 cut(s) 70
Bsu36I CCTNAGG 1 cut(s) 1082
BsuRI GGCC 6 cut(s) 16, 47, 72, 111, 194, 641
BtsCI GGATG 2 cut(s) 412, 850
BtsIMutI CAGTG 3 cut(s) 531, 731, 1024
Cac8I GCNNGC 2 cut(s) 77, 867
CciNI GCGGCCGC 1 cut(s) 70
Cfr13I GGNCC 2 cut(s) 15, 640
Csp6I GTAC 7 cut(s) 7, 103, 472, 517, 610, 854, 964
CviAII CATG 5 cut(s) 25, 340, 857, 949, 977
CviQI GTAC 7 cut(s) 7, 103, 472, 517, 610, 854, 964
DdeI CTNAG 4 cut(s) 164, 219, 606, 1082
DpnI GATC 2 cut(s) 312, 1121
DpnII GATC 2 cut(s) 310, 1119
DrdI GACNNNNNNGTC 1 cut(s) 104
DseDI GACNNNNNNGTC 1 cut(s) 104
EaeI YGGCCR 1 cut(s) 70
EagI CGGCCG 1 cut(s) 70
EclXI CGGCCG 1 cut(s) 70
Eco105I TACGTA 1 cut(s) 351
Eco32I GATATC 1 cut(s) 780
Eco52I CGGCCG 1 cut(s) 70
Eco57I CTGAAG 2 cut(s) 300, 1000
Eco81I CCTNAGG 1 cut(s) 1082
EcoO109I RGGNCCY 1 cut(s) 15
EcoRII CCWGG 4 cut(s) 30, 180, 465, 474
EcoRV GATATC 1 cut(s) 780
FaeI CATG 5 cut(s) 28, 343, 860, 952, 980
FalI AAGNNNNNCTT 2 cut(s) 282, 314
FaqI GGGAC 1 cut(s) 371
FatI CATG 5 cut(s) 24, 339, 856, 948, 976
FblI GTMKAC 2 cut(s) 347, 460
Fnu4HI GCNGC 6 cut(s) 64, 67, 70, 73, 450, 701
FokI GGATG 2 cut(s) 399, 857
Fsp4HI GCNGC 6 cut(s) 64, 67, 70, 73, 450, 701
FspBI CTAG 1 cut(s) 504
GluI GCNGC 6 cut(s) 64, 67, 70, 73, 450, 701
GsuI CTGGAG 1 cut(s) 449
HaeIII GGCC 6 cut(s) 16, 47, 72, 111, 194, 641
HapII CCGG 2 cut(s) 416, 591
Hin1I GRCGYC 1 cut(s) 90
Hin1II CATG 5 cut(s) 28, 343, 860, 952, 980
HincII GTYRAC 1 cut(s) 439
HindII GTYRAC 1 cut(s) 439
HindIII AAGCTT 2 cut(s) 221, 296
HinfI GANTC 2 cut(s) 561, 1130
HpaII CCGG 2 cut(s) 416, 591
HphI GGTGA 7 cut(s) 514, 520, 747, 774, 982, 1009, 1045
Hpy166II GTNNAC 5 cut(s) 348, 439, 461, 487, 869
Hpy188I TCNGA 6 cut(s) 124, 199, 303, 582, 1075, 1129
Hpy188III TCNNGA 6 cut(s) 86, 205, 278, 775, 907, 1081
Hpy8I GTNNAC 5 cut(s) 348, 439, 461, 487, 869
Hpy99I CGWCG 2 cut(s) 95, 110
HpyAV CCTTC 1 cut(s) 329
HpyCH4III ACNGT 3 cut(s) 619, 913, 1044
HpyCH4IV ACGT 5 cut(s) 9, 90, 105, 350, 661
HpyCH4V TGCA 6 cut(s) 40, 703, 727, 809, 869, 881
HpyF10VI GCNNNNNNNGC 2 cut(s) 69, 72
HpyF3I CTNAG 4 cut(s) 164, 219, 606, 1082
HpySE526I ACGT 5 cut(s) 9, 90, 105, 350, 661
Hsp92I GRCGYC 1 cut(s) 90
Hsp92II CATG 5 cut(s) 28, 343, 860, 952, 980
KpnI GGTACC 1 cut(s) 475
Kzo9I GATC 2 cut(s) 310, 1119
LmnI GCTCC 3 cut(s) 572, 631, 697
Lsp1109I GCAGC 2 cut(s) 436, 687
LweI GCATC 1 cut(s) 592
MaeI CTAG 1 cut(s) 504
MaeII ACGT 5 cut(s) 9, 90, 105, 350, 661
MaeIII GTNAC 1 cut(s) 997
MalI GATC 2 cut(s) 312, 1121
MboI GATC 2 cut(s) 310, 1119
MboII GAAGA 4 cut(s) 181, 656, 1034, 1125
MflI RGATCY 1 cut(s) 310
MhlI GDGCHC 1 cut(s) 871
MmeI TCCRAC 2 cut(s) 82, 147
MroXI GAANNNNTTC 1 cut(s) 26
MseI TTAA 3 cut(s) 152, 621, 1113
MslI CAYNNNNRTG 2 cut(s) 953, 1017
MspI CCGG 2 cut(s) 416, 591
MspR9I CCNGG 4 cut(s) 32, 182, 467, 476
MvaI CCWGG 4 cut(s) 32, 182, 467, 476
MvnI CGCG 1 cut(s) 63
MwoI GCNNNNNNNGC 2 cut(s) 69, 72
NdeII GATC 2 cut(s) 310, 1119
NlaIII CATG 5 cut(s) 28, 343, 860, 952, 980
NlaIV GGNNCC 3 cut(s) 473, 568, 1090
NmuCI GTSAC 1 cut(s) 997
NotI GCGGCCGC 1 cut(s) 70
NspI RCATGY 1 cut(s) 28
OliI CACNNNNGTG 1 cut(s) 1017
PciI ACATGT 1 cut(s) 24
PcsI WCGNNNNNNNCGW 3 cut(s) 87, 114, 120
PdmI GAANNNNTTC 1 cut(s) 26
PfeI GAWTC 2 cut(s) 561, 1130
PflMI CCANNNNNTGG 1 cut(s) 211
PfoI TCCNGGA 1 cut(s) 30
PkrI GCNGC 6 cut(s) 65, 68, 71, 74, 451, 702
Ple19I CGATCG 1 cut(s) 1122
Ppu21I YACGTR 2 cut(s) 10, 351
PscI ACATGT 1 cut(s) 24
Psp6I CCWGG 4 cut(s) 30, 180, 465, 474
PspGI CCWGG 4 cut(s) 30, 180, 465, 474
PspN4I GGNNCC 3 cut(s) 473, 568, 1090
PspPI GGNCC 2 cut(s) 15, 640
PsuI RGATCY 1 cut(s) 310
PvuI CGATCG 1 cut(s) 1122
RsaI GTAC 7 cut(s) 8, 104, 473, 518, 611, 855, 965
RsaNI GTAC 7 cut(s) 7, 103, 472, 517, 610, 854, 964
RseI CAYNNNNRTG 2 cut(s) 953, 1017
SaqAI TTAA 3 cut(s) 152, 621, 1113
SatI GCNGC 6 cut(s) 64, 67, 70, 73, 450, 701
Sau3AI GATC 2 cut(s) 310, 1119
Sau96I GGNCC 2 cut(s) 15, 640
ScaI AGTACT 1 cut(s) 965
ScrFI CCNGG 4 cut(s) 32, 182, 467, 476
SduI GDGCHC 1 cut(s) 871
SfaNI GCATC 1 cut(s) 592
SmiMI CAYNNNNRTG 2 cut(s) 953, 1017
SmlI CTYRAG 2 cut(s) 773, 905
SmoI CTYRAG 2 cut(s) 773, 905
SnaBI TACGTA 1 cut(s) 351
SsiI CCGC 4 cut(s) 63, 66, 69, 73
SspI AATATT 1 cut(s) 824
SspMI CTAG 1 cut(s) 504
StyD4I CCNGG 4 cut(s) 30, 180, 465, 474
TaaI ACNGT 3 cut(s) 619, 913, 1044
TaiI ACGT 5 cut(s) 12, 93, 108, 353, 664
TaqI TCGA 5 cut(s) 129, 258, 384, 718, 1064
TaqII GACCGA 1 cut(s) 71
TatI WGTACW 3 cut(s) 516, 853, 963
TauI GCSGC 4 cut(s) 66, 69, 72, 75
TfiI GAWTC 2 cut(s) 561, 1130
Tru1I TTAA 3 cut(s) 152, 621, 1113
Tru9I TTAA 3 cut(s) 152, 621, 1113
TscAI CASTG 3 cut(s) 538, 738, 1024
TseFI GTSAC 1 cut(s) 997
TseI GCWGC 2 cut(s) 449, 700
Tsp45I GTSAC 1 cut(s) 997
TspDTI ATGAA 3 cut(s) 17, 356, 873
TspRI CASTG 3 cut(s) 538, 738, 1024
Van91I CCANNNNNTGG 1 cut(s) 211
VneI GTGCAC 1 cut(s) 867
XapI RAATTY 5 cut(s) 594, 760, 875, 1067, 1104
XceI RCATGY 1 cut(s) 28
XmiI GTMKAC 2 cut(s) 347, 460
XmnI GAANNNNTTC 1 cut(s) 26
XspI CTAG 1 cut(s) 504
ZraI GACGTC 1 cut(s) 91
ZrmI AGTACT 1 cut(s) 965
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.