Rh7DG169700

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0013364
Physical Location & Seq
Forward (+)
15218356 .. 15220492
2137 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG169700.1

Sequence Viewer

Length: 426 bp
ATGAAGTACGTGAGGCCCTTGAACATGTTCCTGGATTTGCACAAGACCAAAGCTGTCCAACGCAGCGGCCGCTTGCTCGGTTTGGACGTCGGCGACAAGTACGTCGGCCTCGCCGTTTCCGACCTCGATAACAAAATCGCCTCCCCTTTAAGGTACTCCCCTCCAATTCAATTTCCTCTCCAGTGTTCATCTGTTTGTGATTTAAGGCTGAGTGTGTTGATTGCAATGATCCGCAGTGTTCTGCTTAGGAAGAAATCAACCCTGGACCTGATGGCCTCTGATTTCCAGAGCTTGGTGTCTAAGCTTTCTCTGGTGGGCTTCGTTGTTGGCTACCCTTTCGACAGACAGCGAGGCACTCCTGAAGTGTGCATTCTGAACCTGAGTTATCTATACGGACACTCAATTTTTTTTCTCTGCGTCACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RuvX

Protein Analysis

141

Amino Acids

15.8

Weight (kDa)

9.44

Isoelectric Point (pI)

39.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013364)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52905
fragaria_vesca FvH4_5g02300 FvH4_5g02300 FvH4_5g02300
malus_domestica MD14G1103600.v1.1
prunus_persica Prupe.5G098900_v2.0.a1
pyrus_communis pycom14g09950
rosa_chinensis RchiOBHm_Chr7g0197851
rosa_laevigata RLG00000003905
rosa_roxburghii Rroxscaffold_3G00258140
rosa_rugosa Rorug07G0044000
rosa_samantha Rh7AG167900 Rh7AG168000 Rh7BG170800 Rh7CG177200 Rh7CG177300 Rh7DG169700
rosa_wichuraiana Rw7G014630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 101
AatII GACGTC 1 cut(s) 90
AccB7I CCANNNNNTGG 1 cut(s) 292
AciI CCGC 3 cut(s) 66, 70, 232
AclWI GGATC 1 cut(s) 223
AcoI YGGCCR 1 cut(s) 67
AcuI CTGAAG 1 cut(s) 381
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 3 cut(s) 8, 101, 155
AfiI CCNNNNNNNGG 2 cut(s) 150, 292
AflIII ACRYGT 1 cut(s) 24
AgsI TTSAA 2 cut(s) 22, 170
AjnI CCWGG 2 cut(s) 30, 261
AluBI AGCT 3 cut(s) 53, 291, 304
AluI AGCT 3 cut(s) 53, 291, 304
AlwI GGATC 1 cut(s) 223
AoxI GGCC 4 cut(s) 14, 67, 106, 273
ApeKI GCWGC 1 cut(s) 63
Asp700I GAANNNNTTC 1 cut(s) 26
AspS9I GGNCC 2 cut(s) 15, 265
AsuHPI GGTGA 1 cut(s) 412
AvaII GGWCC 1 cut(s) 265
BbvI GCAGC 1 cut(s) 75
BccI CCATC 1 cut(s) 265
BceAI ACGGC 1 cut(s) 98
BciT130I CCWGG 2 cut(s) 32, 263
BisI GCNGC 3 cut(s) 64, 67, 70
BlsI GCNGC 3 cut(s) 65, 68, 71
Bme1390I CCNGG 2 cut(s) 32, 263
Bme18I GGWCC 1 cut(s) 265
BmgT120I GGNCC 2 cut(s) 15, 265
BmrFI CCNGG 2 cut(s) 32, 263
BpmI CTGGAG 1 cut(s) 164
Bpu10I CCTNAGC 1 cut(s) 245
BsaAI YACGTR 1 cut(s) 10
BsaHI GRCGYC 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 261
Bsc4I CCNNNNNNNGG 2 cut(s) 150, 292
Bse1I ACTGG 1 cut(s) 181
Bse3DI GCAATG 1 cut(s) 231
BseBI CCWGG 2 cut(s) 32, 263
BseDI CCNNGG 1 cut(s) 261
BseLI CCNNNNNNNGG 2 cut(s) 150, 292
BseMI GCAATG 1 cut(s) 231
BseMII CTCAG 2 cut(s) 200, 371
BseNI ACTGG 1 cut(s) 181
BseX3I CGGCCG 1 cut(s) 67
BseXI GCAGC 1 cut(s) 75
Bsh1285I CGRYCG 1 cut(s) 70
BshFI GGCC 4 cut(s) 16, 69, 108, 275
BsiEI CGRYCG 1 cut(s) 70
BslI CCNNNNNNNGG 2 cut(s) 150, 292
BsmI GAATGC 1 cut(s) 369
BsnI GGCC 4 cut(s) 16, 69, 108, 275
Bsp143I GATC 1 cut(s) 228
BspACI CCGC 3 cut(s) 66, 70, 232
BspANI GGCC 4 cut(s) 16, 69, 108, 275
BspCNI CTCAG 2 cut(s) 201, 372
BspPI GGATC 1 cut(s) 223
BsrDI GCAATG 1 cut(s) 231
BsrI ACTGG 1 cut(s) 181
BssECI CCNNGG 1 cut(s) 261
BssMI GATC 1 cut(s) 228
BssNI GRCGYC 1 cut(s) 87
Bst2UI CCWGG 2 cut(s) 32, 263
BstACI GRCGYC 1 cut(s) 87
BstBAI YACGTR 1 cut(s) 10
BstC8I GCNNGC 1 cut(s) 74
BstDEI CTNAG 4 cut(s) 209, 245, 300, 380
BstKTI GATC 1 cut(s) 231
BstMBI GATC 1 cut(s) 228
BstMCI CGRYCG 1 cut(s) 70
BstMWI GCNNNNNNNGC 1 cut(s) 69
BstNI CCWGG 2 cut(s) 32, 263
BstNSI RCATGY 1 cut(s) 28
BstSCI CCNGG 2 cut(s) 30, 261
BstV1I GCAGC 1 cut(s) 75
BstZI CGGCCG 1 cut(s) 67
BsuRI GGCC 4 cut(s) 16, 69, 108, 275
BtsI GCAGTG 1 cut(s) 241
BtsIMutI CAGTG 2 cut(s) 188, 241
Cac8I GCNNGC 1 cut(s) 74
CciNI GCGGCCGC 1 cut(s) 67
Cfr13I GGNCC 2 cut(s) 15, 265
CseI GACGC 1 cut(s) 406
Csp6I GTAC 3 cut(s) 7, 100, 154
CviAII CATG 1 cut(s) 25
CviQI GTAC 3 cut(s) 7, 100, 154
DdeI CTNAG 4 cut(s) 209, 245, 300, 380
DpnI GATC 1 cut(s) 230
DpnII GATC 1 cut(s) 228
DrdI GACNNNNNNGTC 1 cut(s) 101
DseDI GACNNNNNNGTC 1 cut(s) 101
EaeI YGGCCR 1 cut(s) 67
EagI CGGCCG 1 cut(s) 67
EclXI CGGCCG 1 cut(s) 67
Eco47I GGWCC 1 cut(s) 265
Eco52I CGGCCG 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 381
EcoO109I RGGNCCY 1 cut(s) 15
EcoRII CCWGG 2 cut(s) 30, 261
FaeI CATG 1 cut(s) 28
FaiI YATR 2 cut(s) 26, 391
FatI CATG 1 cut(s) 24
Fnu4HI GCNGC 3 cut(s) 64, 67, 70
Fsp4HI GCNGC 3 cut(s) 64, 67, 70
GluI GCNGC 3 cut(s) 64, 67, 70
GsuI CTGGAG 1 cut(s) 164
HaeIII GGCC 4 cut(s) 16, 69, 108, 275
HgaI GACGC 1 cut(s) 406
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 1 cut(s) 28
HindIII AAGCTT 1 cut(s) 302
HphI GGTGA 1 cut(s) 412
Hpy188I TCNGA 3 cut(s) 121, 280, 375
Hpy188III TCNNGA 2 cut(s) 286, 359
Hpy99I CGWCG 2 cut(s) 92, 107
HpyCH4IV ACGT 3 cut(s) 9, 87, 102
HpyCH4V TGCA 3 cut(s) 40, 224, 369
HpyF10VI GCNNNNNNNGC 1 cut(s) 69
HpyF3I CTNAG 4 cut(s) 209, 245, 300, 380
HpySE526I ACGT 3 cut(s) 9, 87, 102
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 1 cut(s) 28
Kzo9I GATC 1 cut(s) 228
Lsp1109I GCAGC 1 cut(s) 75
MaeII ACGT 3 cut(s) 9, 87, 102
MaeIII GTNAC 1 cut(s) 418
MalI GATC 1 cut(s) 230
MboI GATC 1 cut(s) 228
MboII GAAGA 1 cut(s) 262
MluCI AATT 3 cut(s) 165, 170, 402
MmeI TCCRAC 2 cut(s) 82, 144
MnlI CCTC 8 cut(s) 6, 119, 134, 151, 171, 186, 286, 344
MroXI GAANNNNTTC 1 cut(s) 26
MseI TTAA 2 cut(s) 149, 203
MspA1I CMGCKG 1 cut(s) 66
MspR9I CCNGG 2 cut(s) 32, 263
Mva1269I GAATGC 1 cut(s) 369
MvaI CCWGG 2 cut(s) 32, 263
MwoI GCNNNNNNNGC 1 cut(s) 69
NdeII GATC 1 cut(s) 228
NlaIII CATG 1 cut(s) 28
NmuCI GTSAC 1 cut(s) 418
NotI GCGGCCGC 1 cut(s) 67
NspI RCATGY 1 cut(s) 28
PciI ACATGT 1 cut(s) 24
PcsI WCGNNNNNNNCGW 3 cut(s) 84, 111, 117
PctI GAATGC 1 cut(s) 369
PdmI GAANNNNTTC 1 cut(s) 26
PflMI CCANNNNNTGG 1 cut(s) 292
PfoI TCCNGGA 1 cut(s) 30
PkrI GCNGC 3 cut(s) 65, 68, 71
Ppu21I YACGTR 1 cut(s) 10
PscI ACATGT 1 cut(s) 24
Psp6I CCWGG 2 cut(s) 30, 261
PspGI CCWGG 2 cut(s) 30, 261
PspPI GGNCC 2 cut(s) 15, 265
RsaI GTAC 3 cut(s) 8, 101, 155
RsaNI GTAC 3 cut(s) 7, 100, 154
SaqAI TTAA 2 cut(s) 149, 203
SatI GCNGC 3 cut(s) 64, 67, 70
Sau3AI GATC 1 cut(s) 228
Sau96I GGNCC 2 cut(s) 15, 265
ScrFI CCNGG 2 cut(s) 32, 263
SinI GGWCC 1 cut(s) 265
Sse9I AATT 3 cut(s) 165, 170, 402
SsiI CCGC 3 cut(s) 66, 70, 232
StyD4I CCNGG 2 cut(s) 30, 261
TaiI ACGT 3 cut(s) 12, 90, 105
TaqI TCGA 2 cut(s) 126, 339
TasI AATT 3 cut(s) 165, 170, 402
TauI GCSGC 2 cut(s) 69, 72
Tru1I TTAA 2 cut(s) 149, 203
Tru9I TTAA 2 cut(s) 149, 203
TscAI CASTG 2 cut(s) 188, 241
TseFI GTSAC 1 cut(s) 418
TseI GCWGC 1 cut(s) 63
Tsp45I GTSAC 1 cut(s) 418
TspDTI ATGAA 2 cut(s) 17, 177
TspGWI ACGGA 1 cut(s) 408
TspRI CASTG 2 cut(s) 188, 241
Van91I CCANNNNNTGG 1 cut(s) 292
VpaK11BI GGWCC 1 cut(s) 265
XceI RCATGY 1 cut(s) 28
XmnI GAANNNNTTC 1 cut(s) 26
ZraI GACGTC 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.