Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005986

Physical Location & Seq

Genomic Coordinates Reverse (-)

20086977 .. 20089861

Gene Structure 2885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G54270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGGATAGGCTTGAAGGACCACCACGTCTCATACTAGTTGCTGATCTCGATTGCACATTGGTGGATCACGATGATCCTGAAAACAATGACCTTCTTAGATTCAATGCGCTTTGGGAAGCTCACTATCGCCATGATTCATTGCTTGTTTATTGCACCGGGAGGTCTTTCAGTTCTTACTCGAGTCTGAGGAAGAAGAGACCGTTGTTGACTCCTGACATCGCCGTAACTTCTGTGGGTTCTGAGATTGTATACGGCGGCGGTGAATCAACGGTGTCTGATGTTGTTTGGACTGCTCGTTTGGATTATAAGTGGAATAGAGACATTGTTGTTGAGGAAACTCTTAAATTCCCTAAACTTGAGCCTCAGCCAGACAAGAGCCAAGAAGAGCACAAAGTGAGTTTTTTCGTGGGAAGAGAAGACGCTGTTGAAATAATGAAGGTTCTTCCAGGGATATTAGAGGAGCGTGGGGTGGATGTGAAGCTGGTTTATAGTAATGGATATGCTTTTGATGTATTACCAAGAGGAGCTGGCAAACAAGGTGCTTTGACATATCTACTTGACAAGTTGGATATTGAAGGCAAGCAGCCTTCTAACACACTTGTTTGTGGTGACTCTGGAAATGATGCTGAGCTTTTCAACATTTCTGACGTATATGGCGTAATGGTTAGCAATTCGCATGAAGAATTATTGCAATGGTATGAAGAAAATGCAAAGGACAACCCAAAAATATTTCATGCGTCTGAGAGGTGTGGAGCTGGTATGATAGAAGCTATTCAGAGGTTTAATTTGGGACCAAATGTCTCTCCTAGAGATGTTATGGACACTGAAAATTTCCATGGGGAAAGTTTGAATCCTGCTCATGAGGTTGTTCAGTTTTATTTGTTTTATGAGAGATGGCGTTGTGGAGAGGTGGAAAAGTCTGACAAGTACTTGCAGAATTTGAAATCGCTCTCTAGTCCACTTGGTATTTTTGTTCATCCGTCTGGAGTGGAGAAACCGATACATGAATGGATAGATGAGATGGAAAATTTATACGGTGATGGGAAGGAAAAGAAGTTTCGCATTTGGTTGGATAATGTTACGTCTTCTCATATCAGTTCAGATACATGGCTTGCAAAATTTGTAAAGCATGAGTTATCTGAGGGAAAAGTACGGTCTTGTTCAACAAAAGTCTTACTGAGTTATAAGGAGGAAAAGCAAAGGCTGACGTGGATGCACATCCACCAATCATGGTTAGATGAATCTTCTTCAGATGATCAAGAAAAATGGATTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016740 GO:0016757

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

S6PP S6PP_C

Protein Analysis

425

Amino Acids

48.64

Weight (kDa)

5.06

Isoelectric Point (pI)

43.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S6PP	PF05116	9 - 262	3.5e-94	Sucrose-6F-phosphate phosphohydrolase
Hydrolase_3	PF08282	115 - 231	2.1e-09	haloacid dehalogenase-like hydrolase
S6PP_C	PF08472	285 - 412	1.5e-55	Sucrose-6-phosphate phosphohydrolase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54270
fragaria_vesca	FvH4_7g05160 FvH4_7g05160 FvH4_7g05160 FvH4_7g05160 FvH4_7g05160 FvH4_7g05160
malus_domestica	MD02G1260600.v1.1 MD02G1260700.v1.1
prunus_persica	Prupe.5G001900_v2.0.a1 Prupe.5G001900_v2.0.a1 Prupe.5G001900_v2.0.a1 Prupe.5G001900_v2.0.a1 Prupe.5G001900_v2.0.a1 Prupe.5G001900_v2.0.a1
pyrus_communis	pycom02g22250
rosa_chinensis	RchiOBHm_Chr1g0331691
rosa_laevigata	RLG00000029723
rosa_multiflora	Rmu_sc0005044.1_g000009
rosa_roxburghii	Rroxscaffold_4G00318910 Rroxscaffold_5G00341870
rosa_rugosa	Rorug01G0095400
rosa_samantha	Rh1AG119300 Rh1BG090800 Rh1CG114400 Rh1DG124800
rosa_wichuraiana	Rw1G009640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	306, 1185
AasI	GACNNNNNNGTC	1 cut(s)	24
AccI	GTMKAC	1 cut(s)	249
AciI	CCGC	2 cut(s)	255, 258
AclWI	GGATC	2 cut(s)	68, 72
AcsI	RAATTY	5 cut(s)	344, 829, 937, 1027, 1118
AcuI	CTGAAG	1 cut(s)	1233
AdeI	CACNNNGTG	1 cut(s)	394
AfaI	GTAC	2 cut(s)	929, 1152
AgsI	TTSAA	8 cut(s)	14, 103, 428, 575, 637, 850, 943, 1164
AhdI	GACNNNNNGTC	1 cut(s)	797
AhlI	ACTAGT	1 cut(s)	34
AjiI	CACGTC	2 cut(s)	26, 1209
AjnI	CCWGG	1 cut(s)	445
AleI	CACNNNNGTG	1 cut(s)	59
AluBI	AGCT	6 cut(s)	119, 481, 527, 631, 755, 770
AluI	AGCT	6 cut(s)	119, 481, 527, 631, 755, 770
Alw21I	GWGCWC	1 cut(s)	390
Alw26I	GTCTC	4 cut(s)	32, 190, 312, 805
AlwI	GGATC	2 cut(s)	68, 72
Ama87I	CYCGRG	1 cut(s)	178
ApeKI	GCWGC	1 cut(s)	583
ApoI	RAATTY	5 cut(s)	344, 829, 937, 1027, 1118
ArsI	GACNNNNNNTTYG	2 cut(s)	280, 312
Asp700I	GAANNNNTTC	1 cut(s)	771
AspLEI	GCGC	1 cut(s)	109
AspS9I	GGNCC	2 cut(s)	17, 791
AsuC2I	CCSGG	1 cut(s)	157
AsuHPI	GGTGA	3 cut(s)	272, 620, 1049
AvaI	CYCGRG	1 cut(s)	178
AvaII	GGWCC	2 cut(s)	17, 791
BbsI	GAAGAC	2 cut(s)	423, 1077
Bbv12I	GWGCWC	1 cut(s)	390
BbvCI	CCTCAGC	1 cut(s)	363
BbvI	GCAGC	1 cut(s)	595
BccI	CCATC	3 cut(s)	888, 1015, 1034
BceAI	ACGGC	2 cut(s)	206, 268
BciT130I	CCWGG	1 cut(s)	447
BclI	TGATCA	1 cut(s)	1255
BcnI	CCSGG	1 cut(s)	157
BcoDI	GTCTC	4 cut(s)	32, 190, 312, 805
BcuI	ACTAGT	1 cut(s)	34
BfaI	CTAG	3 cut(s)	35, 807, 954
BisI	GCNGC	2 cut(s)	256, 584
BlpI	GCTNAGC	1 cut(s)	627
BlsI	GCNGC	2 cut(s)	257, 585
BmcAI	AGTACT	1 cut(s)	929
Bme1390I	CCNGG	2 cut(s)	157, 447
Bme18I	GGWCC	2 cut(s)	17, 791
BmeRI	GACNNNNNGTC	1 cut(s)	797
BmeT110I	CYCGRG	1 cut(s)	178
BmgBI	CACGTC	2 cut(s)	26, 1209
BmgT120I	GGNCC	2 cut(s)	17, 791
BmiI	GGNNCC	1 cut(s)	792
BmrFI	CCNGG	2 cut(s)	157, 447
BmsI	GCATC	2 cut(s)	613, 1203
BpiI	GAAGAC	2 cut(s)	423, 1077
BpmI	CTGGAG	1 cut(s)	1005
Bpu10I	CCTNAGC	1 cut(s)	363
Bpu1102I	GCTNAGC	1 cut(s)	627
BpuEI	CTTGAG	1 cut(s)	377
BpuMI	CCSGG	1 cut(s)	157
BsaBI	GATNNNNATC	1 cut(s)	1217
BsaI	GGTCTC	1 cut(s)	190
BsaJI	CCNNGG	2 cut(s)	446, 835
Bse3DI	GCAATG	2 cut(s)	137, 698
Bse8I	GATNNNNATC	1 cut(s)	1217
BseBI	CCWGG	1 cut(s)	447
BseDI	CCNNGG	2 cut(s)	446, 835
BseGI	GGATG	4 cut(s)	478, 976, 1218, 1218
BseJI	GATNNNNATC	1 cut(s)	1217
BseMI	GCAATG	2 cut(s)	137, 698
BseMII	CTCAG	7 cut(s)	176, 231, 377, 618, 732, 1131, 1169
BseRI	GAGGAG	2 cut(s)	473, 537
BseXI	GCAGC	1 cut(s)	595
BsiHKAI	GWGCWC	1 cut(s)	390
BsiHKCI	CYCGRG	1 cut(s)	178
BsiSI	CCGG	1 cut(s)	156
BslFI	GGGAC	1 cut(s)	804
BsmAI	GTCTC	4 cut(s)	32, 190, 312, 805
BsmBI	CGTCTC	1 cut(s)	32
BsmFI	GGGAC	1 cut(s)	804
Bso31I	GGTCTC	1 cut(s)	190
BsoBI	CYCGRG	1 cut(s)	178
Bsp1286I	GDGCHC	1 cut(s)	390
Bsp143I	GATC	4 cut(s)	43, 64, 73, 1255
Bsp1720I	GCTNAGC	1 cut(s)	627
Bsp19I	CCATGG	1 cut(s)	835
BspACI	CCGC	2 cut(s)	255, 258
BspCNI	CTCAG	7 cut(s)	177, 232, 376, 619, 733, 1132, 1170
BspHI	TCATGA	1 cut(s)	859
BspLI	GGNNCC	1 cut(s)	792
BspPI	GGATC	2 cut(s)	68, 72
BspQI	GCTCTTC	1 cut(s)	378
BspTNI	GGTCTC	1 cut(s)	190
BsrDI	GCAATG	2 cut(s)	137, 698
BssECI	CCNNGG	2 cut(s)	446, 835
BssMI	GATC	4 cut(s)	43, 64, 73, 1255
BssNAI	GTATAC	1 cut(s)	250
BssT1I	CCWWGG	1 cut(s)	835
Bst1107I	GTATAC	1 cut(s)	250
Bst2UI	CCWGG	1 cut(s)	447
Bst4CI	ACNGT	4 cut(s)	201, 271, 1037, 1155
Bst6I	CTCTTC	3 cut(s)	188, 378, 406
BstC8I	GCNNGC	3 cut(s)	529, 581, 1113
BstDEI	CTNAG	8 cut(s)	95, 185, 240, 363, 627, 741, 1140, 1178
BstDSI	CCRYGG	1 cut(s)	835
BstF5I	GGATG	4 cut(s)	478, 976, 1218, 1218
BstHHI	GCGC	1 cut(s)	109
BstKTI	GATC	4 cut(s)	46, 67, 76, 1258
BstMAI	GTCTC	4 cut(s)	32, 190, 312, 805
BstMBI	GATC	4 cut(s)	43, 64, 73, 1255
BstNI	CCWGG	1 cut(s)	447
BstSCI	CCNGG	2 cut(s)	155, 445
BstV1I	GCAGC	1 cut(s)	595
BstV2I	GAAGAC	2 cut(s)	423, 1077
BstZ17I	GTATAC	1 cut(s)	250
BtgI	CCRYGG	1 cut(s)	835
BtgZI	GCGATG	1 cut(s)	202
BtrI	CACGTC	2 cut(s)	26, 1209
BtsCI	GGATG	4 cut(s)	478, 976, 1218, 1218
BtsIMutI	CAGTG	1 cut(s)	822
Cac8I	GCNNGC	3 cut(s)	529, 581, 1113
CciI	TCATGA	1 cut(s)	859
CfoI	GCGC	1 cut(s)	109
Cfr13I	GGNCC	2 cut(s)	17, 791
CseI	GACGC	2 cut(s)	428, 726
Csp6I	GTAC	2 cut(s)	928, 1151
CviAII	CATG	9 cut(s)	131, 677, 734, 836, 860, 1004, 1107, 1130, 1230
CviQI	GTAC	2 cut(s)	928, 1151
DdeI	CTNAG	8 cut(s)	95, 185, 240, 363, 627, 741, 1140, 1178
DpnI	GATC	4 cut(s)	45, 66, 75, 1257
DpnII	GATC	4 cut(s)	43, 64, 73, 1255
DraIII	CACNNNGTG	1 cut(s)	394
DrdI	GACNNNNNNGTC	1 cut(s)	24
DriI	GACNNNNNGTC	1 cut(s)	797
DseDI	GACNNNNNNGTC	1 cut(s)	24
Eam1104I	CTCTTC	3 cut(s)	188, 378, 406
Eam1105I	GACNNNNNGTC	1 cut(s)	797
EarI	CTCTTC	3 cut(s)	188, 378, 406
Eco130I	CCWWGG	1 cut(s)	835
Eco31I	GGTCTC	1 cut(s)	190
Eco47I	GGWCC	2 cut(s)	17, 791
Eco57I	CTGAAG	1 cut(s)	1233
Eco88I	CYCGRG	1 cut(s)	178
EcoRII	CCWGG	1 cut(s)	445
EcoT14I	CCWWGG	1 cut(s)	835
ErhI	CCWWGG	1 cut(s)	835
Esp3I	CGTCTC	1 cut(s)	32
FaeI	CATG	9 cut(s)	134, 680, 737, 839, 863, 1007, 1110, 1133, 1233
FaqI	GGGAC	1 cut(s)	804
FatI	CATG	9 cut(s)	130, 676, 733, 835, 859, 1003, 1106, 1129, 1229
FbaI	TGATCA	1 cut(s)	1255
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	2 cut(s)	256, 584
FokI	GGATG	4 cut(s)	485, 963, 1205, 1225
Fsp4HI	GCNGC	2 cut(s)	256, 584
FspBI	CTAG	3 cut(s)	35, 807, 954
GlaI	GCGC	1 cut(s)	108
GluI	GCNGC	2 cut(s)	256, 584
GsuI	CTGGAG	1 cut(s)	1005
HapII	CCGG	1 cut(s)	156
HgaI	GACGC	2 cut(s)	428, 726
HhaI	GCGC	1 cut(s)	109
Hin1II	CATG	9 cut(s)	134, 680, 737, 839, 863, 1007, 1110, 1133, 1233
Hin6I	GCGC	1 cut(s)	107
HinP1I	GCGC	1 cut(s)	107
HincII	GTYRAC	1 cut(s)	207
HindII	GTYRAC	1 cut(s)	207
HinfI	GANTC	8 cut(s)	99, 134, 181, 208, 263, 611, 850, 1241
HpaII	CCGG	1 cut(s)	156
HphI	GGTGA	3 cut(s)	272, 620, 1049
Hpy166II	GTNNAC	3 cut(s)	207, 250, 959
Hpy188III	TCNNGA	8 cut(s)	47, 68, 77, 212, 615, 860, 984, 1259
Hpy8I	GTNNAC	3 cut(s)	207, 250, 959
HpyAV	CCTTC	6 cut(s)	8, 101, 430, 569, 597, 1039
HpyCH4III	ACNGT	4 cut(s)	201, 271, 1037, 1155
HpyCH4IV	ACGT	4 cut(s)	25, 648, 1082, 1208
HpyCH4V	TGCA	7 cut(s)	54, 153, 691, 710, 934, 1115, 1216
HpyF3I	CTNAG	8 cut(s)	95, 185, 240, 363, 627, 741, 1140, 1178
HpySE526I	ACGT	4 cut(s)	25, 648, 1082, 1208
Hsp92II	CATG	9 cut(s)	134, 680, 737, 839, 863, 1007, 1110, 1133, 1233
HspAI	GCGC	1 cut(s)	107
Ksp22I	TGATCA	1 cut(s)	1255
Kzo9I	GATC	4 cut(s)	43, 64, 73, 1255
LguI	GCTCTTC	1 cut(s)	378
LmnI	GCTCC	3 cut(s)	460, 524, 752
Lsp1109I	GCAGC	1 cut(s)	595
LweI	GCATC	2 cut(s)	613, 1203
MaeI	CTAG	3 cut(s)	35, 807, 954
MaeII	ACGT	4 cut(s)	25, 648, 1082, 1208
MaeIII	GTNAC	3 cut(s)	223, 608, 1078
MalI	GATC	4 cut(s)	45, 66, 75, 1257
MboI	GATC	4 cut(s)	43, 64, 73, 1255
MhlI	GDGCHC	1 cut(s)	390
MluCI	AATT	8 cut(s)	344, 670, 683, 784, 829, 937, 1027, 1118
MlyI	GAGTC	3 cut(s)	190, 202, 605
MmeI	TCCRAC	2 cut(s)	546, 1050
MroXI	GAANNNNTTC	1 cut(s)	771
MseI	TTAA	2 cut(s)	342, 783
MslI	CAYNNNNRTG	1 cut(s)	59
MspI	CCGG	1 cut(s)	156
MspR9I	CCNGG	2 cut(s)	157, 447
MvaI	CCWGG	1 cut(s)	447
NciI	CCSGG	1 cut(s)	157
NcoI	CCATGG	1 cut(s)	835
NdeII	GATC	4 cut(s)	43, 64, 73, 1255
NlaIII	CATG	9 cut(s)	134, 680, 737, 839, 863, 1007, 1110, 1133, 1233
NlaIV	GGNNCC	1 cut(s)	792
NmuCI	GTSAC	1 cut(s)	608
OliI	CACNNNNGTG	1 cut(s)	59
PaeR7I	CTCGAG	1 cut(s)	178
PagI	TCATGA	1 cut(s)	859
PciSI	GCTCTTC	1 cut(s)	378
PcsI	WCGNNNNNNNCGW	1 cut(s)	654
PdmI	GAANNNNTTC	1 cut(s)	771
PfeI	GAWTC	5 cut(s)	99, 134, 263, 850, 1241
PkrI	GCNGC	2 cut(s)	257, 585
PleI	GAGTC	3 cut(s)	189, 202, 605
PpsI	GAGTC	3 cut(s)	189, 202, 605
PsiI	TTATAA	2 cut(s)	306, 1185
Psp6I	CCWGG	1 cut(s)	445
PspGI	CCWGG	1 cut(s)	445
PspN4I	GGNNCC	1 cut(s)	792
PspPI	GGNCC	2 cut(s)	17, 791
PspXI	VCTCGAGB	1 cut(s)	178
RsaI	GTAC	2 cut(s)	929, 1152
RsaNI	GTAC	2 cut(s)	928, 1151
RseI	CAYNNNNRTG	1 cut(s)	59
SapI	GCTCTTC	1 cut(s)	378
SaqAI	TTAA	2 cut(s)	342, 783
SatI	GCNGC	2 cut(s)	256, 584
Sau3AI	GATC	4 cut(s)	43, 64, 73, 1255
Sau96I	GGNCC	2 cut(s)	17, 791
ScaI	AGTACT	1 cut(s)	929
SchI	GAGTC	3 cut(s)	190, 202, 605
ScrFI	CCNGG	2 cut(s)	157, 447
SduI	GDGCHC	1 cut(s)	390
SfaNI	GCATC	2 cut(s)	613, 1203
Sfr274I	CTCGAG	1 cut(s)	178
SinI	GGWCC	2 cut(s)	17, 791
SlaI	CTCGAG	1 cut(s)	178
SmiMI	CAYNNNNRTG	1 cut(s)	59
SmlI	CTYRAG	2 cut(s)	178, 356
SmoI	CTYRAG	2 cut(s)	178, 356
SpeI	ACTAGT	1 cut(s)	34
Sse9I	AATT	8 cut(s)	344, 670, 683, 784, 829, 937, 1027, 1118
SsiI	CCGC	2 cut(s)	255, 258
SspI	AATATT	1 cut(s)	729
SspMI	CTAG	3 cut(s)	35, 807, 954
StyD4I	CCNGG	2 cut(s)	155, 445
StyI	CCWWGG	1 cut(s)	835
TaaI	ACNGT	4 cut(s)	201, 271, 1037, 1155
TaiI	ACGT	4 cut(s)	28, 651, 1085, 1211
TaqI	TCGA	2 cut(s)	48, 179
TasI	AATT	8 cut(s)	344, 670, 683, 784, 829, 937, 1027, 1118
TatI	WGTACW	1 cut(s)	927
TauI	GCSGC	1 cut(s)	258
TfiI	GAWTC	5 cut(s)	99, 134, 263, 850, 1241
Tru1I	TTAA	2 cut(s)	342, 783
Tru9I	TTAA	2 cut(s)	342, 783
TscAI	CASTG	1 cut(s)	829
TseFI	GTSAC	1 cut(s)	608
TseI	GCWGC	1 cut(s)	583
Tsp45I	GTSAC	1 cut(s)	608
TspDTI	ATGAA	8 cut(s)	126, 449, 693, 714, 722, 965, 1020, 1254
TspGWI	ACGGA	1 cut(s)	969
TspRI	CASTG	1 cut(s)	829
VpaK11BI	GGWCC	2 cut(s)	17, 791
XapI	RAATTY	5 cut(s)	344, 829, 937, 1027, 1118
XhoI	CTCGAG	1 cut(s)	178
XmiI	GTMKAC	1 cut(s)	249
XmnI	GAANNNNTTC	1 cut(s)	771
XspI	CTAG	3 cut(s)	35, 807, 954
ZrmI	AGTACT	1 cut(s)	929

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.