Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005986

Physical Location & Seq

Genomic Coordinates Forward (+)

46354277 .. 46358117

Gene Structure 3841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00318910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGACTCTCGGCTCAATGGCTCTGCTCGTCTCATGCTCGTTTCAGATCTTGATTACACAATGGTGGATCATGACGATCCTCGAAATACTTCTCTTCTTCGGTTCAATGCGCTATGGGAAGCATATTATCGCCATGATTCTCTGCTCGTATTTTCAACCGGAAGATCACCTCTATCTTACAAACCCTTGAGGGATGAGAAGCCCTTGTTGACGCCCGATATTACCATCATGTCTGTTGGAACCGAGATTATCTACGGGGAGGGTGACGCAATGCTACCCGATGATGGTTGGCAACACTATCTCAATCACAATTGGGATAGAAATATTGTTGTCGAGGAAACAACTAAGTTTCCACAACTCACTCCTCAGGCGGAGGCAGAGCAACGACCTCACAAGGTTAGCTTTTATGTAGACAAGGTTGAGGCAACTGAGATAATGAATGTTCTATCAGAACGGTTGGCGAAACGTGGGTTAGATGTGAAGATAATATATAGCAGTGGTATTGCTTTGGATGTGTTACCAAAAGGTGCTGGCAAAGGGCAAGCTCTTGCATATCTGTTAAAGAAATTCAAAATTGATGGCAAACTGCCCTGCAATACAATTGTTTGTGGTGACTCTGGAAATGATGCCGAACTCTTCACTCTTCCTCAAGTCTATGGTGTCATGGTGTGGAGGTTGGTAATGCACAGGAAGAATTGTTACATTGGTCCAAATGTATCGCCAAGAGATATGAAAGACTTCCAAAAGTGCAAAGTGAACATTTTCAGCCCCGCTTATGAAGTGGTAAAGTTCTATTTGTTTTATGAGAAATGGCGACGTGCAGAGGTAGAGAAATCAGAGCAGTATATGCAGAACTTAAGATCGATCTTTGTTGGACTGCTGTGGTTGAGGTACCAGATACTTTCACTTGGCTGCACATGCATCAGACATGGTTGGATGGTTTTGCAATTGCAAATGCAGAAAGATGGTTGTTTTAGGACTCCCCCTTATGGTTCAACCCATGTTTCCTCCAGAGTTCCAGTGCATGCAACCGATGATTTGGCTGCGGAGCGCTCGGCAAGCAGTCACCAGCCAAAATACCACTGGCTACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

S6PP S6PP_C

Protein Analysis

364

Amino Acids

41.84

Weight (kDa)

8.06

Isoelectric Point (pI)

45.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S6PP	PF05116	10 - 223	8.9e-78	Sucrose-6F-phosphate phosphohydrolase
Hydrolase_3	PF08282	110 - 215	9e-10	haloacid dehalogenase-like hydrolase
S6PP_C	PF08472	257 - 290	6.1e-11	Sucrose-6-phosphate phosphohydrolase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54270
fragaria_vesca	FvH4_7g05160 FvH4_7g05160 FvH4_7g05160 FvH4_7g05160 FvH4_7g05160 FvH4_7g05160
malus_domestica	MD02G1260600.v1.1 MD02G1260700.v1.1
prunus_persica	Prupe.5G001900_v2.0.a1 Prupe.5G001900_v2.0.a1 Prupe.5G001900_v2.0.a1 Prupe.5G001900_v2.0.a1 Prupe.5G001900_v2.0.a1 Prupe.5G001900_v2.0.a1
pyrus_communis	pycom02g22250
rosa_chinensis	RchiOBHm_Chr1g0331691
rosa_laevigata	RLG00000029723
rosa_multiflora	Rmu_sc0005044.1_g000009
rosa_roxburghii	Rroxscaffold_4G00318910 Rroxscaffold_5G00341870
rosa_rugosa	Rorug01G0095400
rosa_samantha	Rh1AG119300 Rh1BG090800 Rh1CG114400 Rh1DG124800
rosa_wichuraiana	Rw1G009640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	891
AccB1I	GGYRCC	1 cut(s)	891
AccI	GTMKAC	1 cut(s)	411
AciI	CCGC	3 cut(s)	371, 771, 1046
AclWI	GGATC	2 cut(s)	71, 75
AcsI	RAATTY	1 cut(s)	566
AcyI	GRCGYC	1 cut(s)	212
AfaI	GTAC	1 cut(s)	893
AfeI	AGCGCT	1 cut(s)	1052
AfiI	CCNNNNNNNGG	2 cut(s)	284, 989
AflII	CTTAAG	1 cut(s)	856
AgsI	TTSAA	4 cut(s)	106, 156, 571, 996
AjiI	CACGTC	1 cut(s)	818
AleI	CACNNNNGTG	1 cut(s)	62
AluBI	AGCT	2 cut(s)	402, 545
AluI	AGCT	2 cut(s)	402, 545
Alw26I	GTCTC	1 cut(s)	35
AlwI	GGATC	2 cut(s)	71, 75
Aor51HI	AGCGCT	1 cut(s)	1052
ApeKI	GCWGC	2 cut(s)	912, 1043
ApoI	RAATTY	1 cut(s)	566
Asp700I	GAANNNNTTC	3 cut(s)	88, 737, 761
Asp718I	GGTACC	1 cut(s)	891
AspLEI	GCGC	2 cut(s)	112, 1053
AspS9I	GGNCC	1 cut(s)	707
AsuHPI	GGTGA	4 cut(s)	159, 275, 623, 1058
AvaII	GGWCC	1 cut(s)	707
AxyI	CCTNAGG	1 cut(s)	366
BanI	GGYRCC	1 cut(s)	891
BarI	GAAGNNNNNNTAC	2 cut(s)	683, 715
BbvI	GCAGC	2 cut(s)	899, 1030
BccI	CCATC	5 cut(s)	233, 278, 572, 931, 959
BcoDI	GTCTC	1 cut(s)	35
BfoI	RGCGCY	1 cut(s)	1054
BfrI	CTTAAG	1 cut(s)	856
BglII	AGATCT	1 cut(s)	46
BisI	GCNGC	2 cut(s)	913, 1044
BlsI	GCNGC	2 cut(s)	914, 1045
Bme18I	GGWCC	1 cut(s)	707
BmgBI	CACGTC	1 cut(s)	818
BmgT120I	GGNCC	1 cut(s)	707
BmiI	GGNNCC	2 cut(s)	241, 893
BmsI	GCATC	2 cut(s)	616, 930
BpmI	CTGGAG	1 cut(s)	994
BpuEI	CTTGAG	2 cut(s)	208, 633
Bsa29I	ATCGAT	1 cut(s)	863
BsaHI	GRCGYC	1 cut(s)	212
BsaWI	WCCGGW	1 cut(s)	158
Bsc4I	CCNNNNNNNGG	2 cut(s)	284, 989
Bse1I	ACTGG	2 cut(s)	1019, 1088
Bse21I	CCTNAGG	1 cut(s)	366
Bse3DI	GCAATG	1 cut(s)	276
BseCI	ATCGAT	1 cut(s)	863
BseGI	GGATG	3 cut(s)	199, 517, 942
BseLI	CCNNNNNNNGG	2 cut(s)	284, 989
BseMI	GCAATG	1 cut(s)	276
BseMII	CTCAG	2 cut(s)	380, 420
BseNI	ACTGG	2 cut(s)	1019, 1088
BseRI	GAGGAG	1 cut(s)	354
BseXI	GCAGC	2 cut(s)	899, 1030
BsgI	GTGCAG	2 cut(s)	840, 898
BshNI	GGYRCC	1 cut(s)	891
BshVI	ATCGAT	1 cut(s)	863
BsiSI	CCGG	1 cut(s)	159
BslI	CCNNNNNNNGG	2 cut(s)	284, 989
BsmAI	GTCTC	1 cut(s)	35
BsmBI	CGTCTC	1 cut(s)	35
Bsp143I	GATC	6 cut(s)	46, 67, 76, 164, 860, 864
BspACI	CCGC	3 cut(s)	371, 771, 1046
BspCNI	CTCAG	2 cut(s)	379, 421
BspDI	ATCGAT	1 cut(s)	863
BspHI	TCATGA	1 cut(s)	70
BspLI	GGNNCC	2 cut(s)	241, 893
BspPI	GGATC	2 cut(s)	71, 75
BspT107I	GGYRCC	1 cut(s)	891
BspTI	CTTAAG	1 cut(s)	856
BsrDI	GCAATG	1 cut(s)	276
BsrI	ACTGG	2 cut(s)	1019, 1088
BssMI	GATC	6 cut(s)	46, 67, 76, 164, 860, 864
BssNI	GRCGYC	1 cut(s)	212
Bst4CI	ACNGT	1 cut(s)	456
Bst6I	CTCTTC	3 cut(s)	99, 641, 648
BstACI	GRCGYC	1 cut(s)	212
BstAFI	CTTAAG	1 cut(s)	856
BstAPI	GCANNNNNTGC	1 cut(s)	847
BstC8I	GCNNGC	4 cut(s)	532, 543, 1026, 1060
BstDEI	CTNAG	3 cut(s)	345, 366, 429
BstF5I	GGATG	3 cut(s)	199, 517, 942
BstH2I	RGCGCY	1 cut(s)	1054
BstHHI	GCGC	2 cut(s)	112, 1053
BstKTI	GATC	6 cut(s)	49, 70, 79, 167, 863, 867
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	6 cut(s)	46, 67, 76, 164, 860, 864
BstMWI	GCNNNNNNNGC	3 cut(s)	847, 918, 1059
BstNSI	RCATGY	2 cut(s)	921, 1028
BstV1I	GCAGC	2 cut(s)	899, 1030
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
Bsu15I	ATCGAT	1 cut(s)	863
Bsu36I	CCTNAGG	1 cut(s)	366
BsuTUI	ATCGAT	1 cut(s)	863
BtrI	CACGTC	1 cut(s)	818
BtsCI	GGATG	3 cut(s)	199, 517, 942
BtsI	GCAGTG	1 cut(s)	502
BtsIMutI	CAGTG	3 cut(s)	502, 1026, 1081
Cac8I	GCNNGC	4 cut(s)	532, 543, 1026, 1060
CciI	TCATGA	1 cut(s)	70
CfoI	GCGC	2 cut(s)	112, 1053
Cfr13I	GGNCC	1 cut(s)	707
ClaI	ATCGAT	1 cut(s)	863
CseI	GACGC	2 cut(s)	220, 275
Csp6I	GTAC	1 cut(s)	892
CviAII	CATG	9 cut(s)	34, 71, 134, 229, 664, 918, 929, 1001, 1025
CviQI	GTAC	1 cut(s)	892
DdeI	CTNAG	3 cut(s)	345, 366, 429
DpnI	GATC	6 cut(s)	48, 69, 78, 166, 862, 866
DpnII	GATC	6 cut(s)	46, 67, 76, 164, 860, 864
Eam1104I	CTCTTC	3 cut(s)	99, 641, 648
EarI	CTCTTC	3 cut(s)	99, 641, 648
EciI	GGCGGA	1 cut(s)	386
Eco47I	GGWCC	1 cut(s)	707
Eco47III	AGCGCT	1 cut(s)	1052
Eco81I	CCTNAGG	1 cut(s)	366
EcoT22I	ATGCAT	1 cut(s)	923
Esp3I	CGTCTC	1 cut(s)	35
FaeI	CATG	9 cut(s)	37, 74, 137, 232, 667, 921, 932, 1004, 1028
FalI	AAGNNNNNCTT	2 cut(s)	386, 418
FatI	CATG	9 cut(s)	33, 70, 133, 228, 663, 917, 928, 1000, 1024
FauI	CCCGC	1 cut(s)	778
FblI	GTMKAC	1 cut(s)	411
Fnu4HI	GCNGC	2 cut(s)	913, 1044
FokI	GGATG	3 cut(s)	206, 524, 949
Fsp4HI	GCNGC	2 cut(s)	913, 1044
GlaI	GCGC	2 cut(s)	111, 1052
GluI	GCNGC	2 cut(s)	913, 1044
GsuI	CTGGAG	1 cut(s)	994
HaeII	RGCGCY	1 cut(s)	1054
HapII	CCGG	1 cut(s)	159
HgaI	GACGC	2 cut(s)	220, 275
HhaI	GCGC	2 cut(s)	112, 1053
Hin1I	GRCGYC	1 cut(s)	212
Hin1II	CATG	9 cut(s)	37, 74, 137, 232, 667, 921, 932, 1004, 1028
Hin6I	GCGC	2 cut(s)	110, 1051
HinP1I	GCGC	2 cut(s)	110, 1051
HincII	GTYRAC	1 cut(s)	210
HindII	GTYRAC	1 cut(s)	210
HinfI	GANTC	4 cut(s)	5, 137, 614, 979
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	4 cut(s)	159, 275, 623, 1058
Hpy166II	GTNNAC	3 cut(s)	210, 412, 757
Hpy188I	TCNGA	4 cut(s)	46, 451, 838, 926
Hpy188III	TCNNGA	4 cut(s)	50, 71, 618, 1011
Hpy8I	GTNNAC	3 cut(s)	210, 412, 757
Hpy99I	CGWCG	1 cut(s)	819
HpyCH4III	ACNGT	1 cut(s)	456
HpyCH4IV	ACGT	2 cut(s)	466, 817
HpyF10VI	GCNNNNNNNGC	3 cut(s)	847, 918, 1059
HpyF3I	CTNAG	3 cut(s)	345, 366, 429
HpySE526I	ACGT	2 cut(s)	466, 817
Hsp92I	GRCGYC	1 cut(s)	212
Hsp92II	CATG	9 cut(s)	37, 74, 137, 232, 667, 921, 932, 1004, 1028
HspAI	GCGC	2 cut(s)	110, 1051
KpnI	GGTACC	1 cut(s)	895
Kzo9I	GATC	6 cut(s)	46, 67, 76, 164, 860, 864
LmnI	GCTCC	1 cut(s)	1048
Lsp1109I	GCAGC	2 cut(s)	899, 1030
LweI	GCATC	2 cut(s)	616, 930
MaeII	ACGT	2 cut(s)	466, 817
MaeIII	GTNAC	5 cut(s)	263, 516, 611, 698, 1064
MalI	GATC	6 cut(s)	48, 69, 78, 166, 862, 866
MboI	GATC	6 cut(s)	46, 67, 76, 164, 860, 864
MboII	GAAGA	7 cut(s)	86, 89, 174, 493, 628, 635, 703
MfeI	CAATTG	3 cut(s)	310, 600, 947
MflI	RGATCY	1 cut(s)	46
MluCI	AATT	6 cut(s)	310, 566, 573, 600, 694, 947
MlyI	GAGTC	2 cut(s)	608, 973
MmeI	TCCRAC	3 cut(s)	217, 853, 914
Mph1103I	ATGCAT	1 cut(s)	923
MroXI	GAANNNNTTC	3 cut(s)	88, 737, 761
MseI	TTAA	2 cut(s)	560, 857
MslI	CAYNNNNRTG	1 cut(s)	62
MspCI	CTTAAG	1 cut(s)	856
MspI	CCGG	1 cut(s)	159
MunI	CAATTG	3 cut(s)	310, 600, 947
MwoI	GCNNNNNNNGC	3 cut(s)	847, 918, 1059
NdeII	GATC	6 cut(s)	46, 67, 76, 164, 860, 864
NlaIII	CATG	9 cut(s)	37, 74, 137, 232, 667, 921, 932, 1004, 1028
NlaIV	GGNNCC	2 cut(s)	241, 893
NmeAIII	GCCGAG	1 cut(s)	1034
NmuCI	GTSAC	3 cut(s)	263, 611, 1064
NsiI	ATGCAT	1 cut(s)	923
NspI	RCATGY	2 cut(s)	921, 1028
OliI	CACNNNNGTG	1 cut(s)	62
PaeI	GCATGC	1 cut(s)	1028
PagI	TCATGA	1 cut(s)	70
PdmI	GAANNNNTTC	3 cut(s)	88, 737, 761
PfeI	GAWTC	1 cut(s)	137
PkrI	GCNGC	2 cut(s)	914, 1045
PleI	GAGTC	2 cut(s)	608, 973
PpsI	GAGTC	2 cut(s)	608, 973
PspN4I	GGNNCC	2 cut(s)	241, 893
PspPI	GGNCC	1 cut(s)	707
PsuI	RGATCY	1 cut(s)	46
RsaI	GTAC	1 cut(s)	893
RsaNI	GTAC	1 cut(s)	892
RseI	CAYNNNNRTG	1 cut(s)	62
SaqAI	TTAA	2 cut(s)	560, 857
SatI	GCNGC	2 cut(s)	913, 1044
Sau3AI	GATC	6 cut(s)	46, 67, 76, 164, 860, 864
Sau96I	GGNCC	1 cut(s)	707
SchI	GAGTC	2 cut(s)	608, 973
SfaNI	GCATC	2 cut(s)	616, 930
SinI	GGWCC	1 cut(s)	707
SmiMI	CAYNNNNRTG	1 cut(s)	62
SmlI	CTYRAG	3 cut(s)	187, 648, 856
SmoI	CTYRAG	3 cut(s)	187, 648, 856
SphI	GCATGC	1 cut(s)	1028
Sse9I	AATT	6 cut(s)	310, 566, 573, 600, 694, 947
SsiI	CCGC	3 cut(s)	371, 771, 1046
SspI	AATATT	1 cut(s)	325
TaaI	ACNGT	1 cut(s)	456
TaiI	ACGT	2 cut(s)	469, 820
TaqI	TCGA	3 cut(s)	82, 333, 863
TasI	AATT	6 cut(s)	310, 566, 573, 600, 694, 947
TfiI	GAWTC	1 cut(s)	137
Tru1I	TTAA	2 cut(s)	560, 857
Tru9I	TTAA	2 cut(s)	560, 857
TscAI	CASTG	3 cut(s)	502, 1026, 1088
TseFI	GTSAC	3 cut(s)	263, 611, 1064
TseI	GCWGC	2 cut(s)	912, 1043
Tsp45I	GTSAC	3 cut(s)	263, 611, 1064
TspDTI	ATGAA	3 cut(s)	452, 746, 792
TspRI	CASTG	3 cut(s)	502, 1026, 1088
Vha464I	CTTAAG	1 cut(s)	856
VpaK11BI	GGWCC	1 cut(s)	707
XapI	RAATTY	1 cut(s)	566
XceI	RCATGY	2 cut(s)	921, 1028
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1080
XmiI	GTMKAC	1 cut(s)	411
XmnI	GAANNNNTTC	3 cut(s)	88, 737, 761
Zsp2I	ATGCAT	1 cut(s)	923

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.