Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0005986

Physical Location & Seq

Genomic Coordinates Reverse (-)

23004853 .. 23008974

Gene Structure 4122 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG114400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGACTCTCGGCTCAATGGCTCTGCTCGTCTCATGCTGGTTTCAGATCTTGATTACACAATGGTGGATCATGATGATCCTCGAAATACTTCTCTTCTTCGGTTCAATGCGCTATGGGAAGCATATTATCGCCATGATTCTCTGCTCGTATTTTCAACCGGAAGATCACCTCTATCTTACAAACCCTTGCGGAATGAGAAGCCCTTGTTGACGCCCGATATTACTATCATGTCTGTTGGAACTGAGATTATCTACGGTGAGGGTGACGCAAACGCAATGCTACCCGATGATGGTTGGCAACACTATCTCAATCACAATTGGGATAGAAATATTGTTGTCGAGGAAACAACCAAGTTTCCTCAACTAACTCCTCAGGCGGAGGCAGAGCAACGACCTCACAAGGTTAGCTTTTATGTAGACAAGGTCGAGGCAACTGAGATAATGAATGTTCTATCAGAACGGTTGGCGAAACGTGGGTTAGATATAAAGATAATATATAGCAGTGGTATTGCTTTGGATGTGTTACCAAAAGGTGCTGGCAAAGGGCAAGCTCTTGCATATCTGTTAAAGAAATTCAAAATTGATGGCAAACTGCCCTGCAATACAATTGTTTGTGGTGACTCTGGAAATGATGCTGAACTCTTCACTCTTCCTGAAGTCTATGGTGTCATGGTTGGTAATGCACAGGAAGAATTGTTACACTGGTATGCACACAACGCAAAGAGCAATAGTCGCATATTGCATGCAACTGAGAGATGTGCAGCTGGGATCTTACAAGCCATTGGTAATTTTCATTTAGGTCCCAATGTATCGCCAAGAGATATCAAAGACTTCCAAAAGTGCAAAGTGAACATTTTCAGCCCCGCTTATGAAGTGGTAAAGTTCTATCTGTTTTATGAGAAATGGCGACGTGCAGAGGTAGAGAAATCAGAGCAGTATATGCAGAACTTAAGATCGATCTTTGTAAGTGTCATTTGGTCTTTCTTCCCTTTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

S6PP S6PP_C

Protein Analysis

332

Amino Acids

37.88

Weight (kDa)

6.16

Isoelectric Point (pI)

41.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S6PP	PF05116	10 - 264	1.9e-94	Sucrose-6F-phosphate phosphohydrolase
Hydrolase_3	PF08282	117 - 243	1.5e-13	haloacid dehalogenase-like hydrolase
S6PP_C	PF08472	288 - 321	3.8e-11	Sucrose-6-phosphate phosphohydrolase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54270
fragaria_vesca	FvH4_7g05160 FvH4_7g05160 FvH4_7g05160 FvH4_7g05160 FvH4_7g05160 FvH4_7g05160
malus_domestica	MD02G1260600.v1.1 MD02G1260700.v1.1
prunus_persica	Prupe.5G001900_v2.0.a1 Prupe.5G001900_v2.0.a1 Prupe.5G001900_v2.0.a1 Prupe.5G001900_v2.0.a1 Prupe.5G001900_v2.0.a1 Prupe.5G001900_v2.0.a1
pyrus_communis	pycom02g22250
rosa_chinensis	RchiOBHm_Chr1g0331691
rosa_laevigata	RLG00000029723
rosa_multiflora	Rmu_sc0005044.1_g000009
rosa_roxburghii	Rroxscaffold_4G00318910 Rroxscaffold_5G00341870
rosa_rugosa	Rorug01G0095400
rosa_samantha	Rh1AG119300 Rh1BG090800 Rh1CG114400 Rh1DG124800
rosa_wichuraiana	Rw1G009640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	417
AciI	CCGC	3 cut(s)	190, 377, 864
AclWI	GGATC	3 cut(s)	71, 75, 776
AcsI	RAATTY	1 cut(s)	572
AcuI	CTGAAG	1 cut(s)	675
AcyI	GRCGYC	1 cut(s)	212
AfiI	CCNNNNNNNGG	1 cut(s)	290
AflII	CTTAAG	1 cut(s)	949
AgsI	TTSAA	3 cut(s)	106, 156, 577
AjiI	CACGTC	1 cut(s)	911
AleI	CACNNNNGTG	1 cut(s)	62
AluBI	AGCT	3 cut(s)	408, 551, 764
AluI	AGCT	3 cut(s)	408, 551, 764
Alw26I	GTCTC	1 cut(s)	35
AlwI	GGATC	3 cut(s)	71, 75, 776
ApeKI	GCWGC	1 cut(s)	761
ApoI	RAATTY	1 cut(s)	572
Asp700I	GAANNNNTTC	2 cut(s)	88, 854
AspLEI	GCGC	1 cut(s)	112
AspS9I	GGNCC	1 cut(s)	800
AsuHPI	GGTGA	4 cut(s)	159, 269, 275, 629
AvaII	GGWCC	1 cut(s)	800
AxyI	CCTNAGG	1 cut(s)	372
BarI	GAAGNNNNNNTAC	2 cut(s)	681, 713
BbvI	GCAGC	1 cut(s)	773
BccI	CCATC	2 cut(s)	284, 578
BcoDI	GTCTC	1 cut(s)	35
BfrI	CTTAAG	1 cut(s)	949
BglII	AGATCT	1 cut(s)	46
BisI	GCNGC	1 cut(s)	762
BlsI	GCNGC	1 cut(s)	763
Bme18I	GGWCC	1 cut(s)	800
BmgBI	CACGTC	1 cut(s)	911
BmgT120I	GGNCC	1 cut(s)	800
BmiI	GGNNCC	1 cut(s)	802
BmsI	GCATC	1 cut(s)	622
Bsa29I	ATCGAT	1 cut(s)	956
BsaHI	GRCGYC	1 cut(s)	212
BsaWI	WCCGGW	1 cut(s)	158
Bsc4I	CCNNNNNNNGG	1 cut(s)	290
Bse1I	ACTGG	1 cut(s)	707
Bse21I	CCTNAGG	1 cut(s)	372
Bse3DI	GCAATG	1 cut(s)	282
BseCI	ATCGAT	1 cut(s)	956
BseGI	GGATG	1 cut(s)	523
BseLI	CCNNNNNNNGG	1 cut(s)	290
BseMI	GCAATG	1 cut(s)	282
BseMII	CTCAG	4 cut(s)	234, 386, 426, 741
BseNI	ACTGG	1 cut(s)	707
BseRI	GAGGAG	1 cut(s)	360
BseXI	GCAGC	1 cut(s)	773
BseYI	CCCAGC	1 cut(s)	764
BsgI	GTGCAG	2 cut(s)	780, 933
BshVI	ATCGAT	1 cut(s)	956
BsiSI	CCGG	1 cut(s)	159
BslFI	GGGAC	1 cut(s)	786
BslI	CCNNNNNNNGG	1 cut(s)	290
BsmAI	GTCTC	1 cut(s)	35
BsmBI	CGTCTC	1 cut(s)	35
BsmFI	GGGAC	1 cut(s)	786
Bsp143I	GATC	7 cut(s)	46, 67, 76, 164, 768, 953, 957
BspACI	CCGC	3 cut(s)	190, 377, 864
BspCNI	CTCAG	4 cut(s)	235, 385, 427, 742
BspDI	ATCGAT	1 cut(s)	956
BspHI	TCATGA	1 cut(s)	70
BspLI	GGNNCC	1 cut(s)	802
BspPI	GGATC	3 cut(s)	71, 75, 776
BspTI	CTTAAG	1 cut(s)	949
BsrDI	GCAATG	1 cut(s)	282
BsrI	ACTGG	1 cut(s)	707
BssMI	GATC	7 cut(s)	46, 67, 76, 164, 768, 953, 957
BssNI	GRCGYC	1 cut(s)	212
Bst4CI	ACNGT	2 cut(s)	257, 462
Bst6I	CTCTTC	3 cut(s)	99, 647, 654
BstACI	GRCGYC	1 cut(s)	212
BstAFI	CTTAAG	1 cut(s)	949
BstAPI	GCANNNNNTGC	1 cut(s)	940
BstC8I	GCNNGC	3 cut(s)	538, 549, 744
BstDEI	CTNAG	4 cut(s)	243, 372, 435, 750
BstF5I	GGATG	1 cut(s)	523
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	7 cut(s)	49, 70, 79, 167, 771, 956, 960
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	7 cut(s)	46, 67, 76, 164, 768, 953, 957
BstMWI	GCNNNNNNNGC	3 cut(s)	716, 732, 940
BstNSI	RCATGY	1 cut(s)	746
BstV1I	GCAGC	1 cut(s)	773
BstX2I	RGATCY	2 cut(s)	46, 768
BstYI	RGATCY	2 cut(s)	46, 768
Bsu15I	ATCGAT	1 cut(s)	956
Bsu36I	CCTNAGG	1 cut(s)	372
BsuTUI	ATCGAT	1 cut(s)	956
BtrI	CACGTC	1 cut(s)	911
BtsCI	GGATG	1 cut(s)	523
BtsI	GCAGTG	1 cut(s)	508
BtsIMutI	CAGTG	2 cut(s)	508, 700
Cac8I	GCNNGC	3 cut(s)	538, 549, 744
CciI	TCATGA	1 cut(s)	70
CfoI	GCGC	1 cut(s)	112
Cfr13I	GGNCC	1 cut(s)	800
ClaI	ATCGAT	1 cut(s)	956
CseI	GACGC	2 cut(s)	220, 275
CviAII	CATG	6 cut(s)	34, 71, 134, 229, 670, 743
CviJI	RGCY	8 cut(s)	13, 21, 202, 408, 551, 764, 779, 861
CviKI_1	RGCY	8 cut(s)	13, 21, 202, 408, 551, 764, 779, 861
DdeI	CTNAG	4 cut(s)	243, 372, 435, 750
DpnI	GATC	7 cut(s)	48, 69, 78, 166, 770, 955, 959
DpnII	GATC	7 cut(s)	46, 67, 76, 164, 768, 953, 957
Eam1104I	CTCTTC	3 cut(s)	99, 647, 654
EarI	CTCTTC	3 cut(s)	99, 647, 654
EciI	GGCGGA	1 cut(s)	392
Eco32I	GATATC	1 cut(s)	823
Eco47I	GGWCC	1 cut(s)	800
Eco57I	CTGAAG	1 cut(s)	675
Eco81I	CCTNAGG	1 cut(s)	372
EcoO109I	RGGNCCY	1 cut(s)	800
EcoRV	GATATC	1 cut(s)	823
Esp3I	CGTCTC	1 cut(s)	35
FaeI	CATG	6 cut(s)	37, 74, 137, 232, 673, 746
FalI	AAGNNNNNCTT	2 cut(s)	392, 424
FaqI	GGGAC	1 cut(s)	786
FatI	CATG	6 cut(s)	33, 70, 133, 228, 669, 742
FauI	CCCGC	1 cut(s)	871
FblI	GTMKAC	1 cut(s)	417
Fnu4HI	GCNGC	1 cut(s)	762
FokI	GGATG	1 cut(s)	530
Fsp4HI	GCNGC	1 cut(s)	762
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	1 cut(s)	762
GsaI	CCCAGC	1 cut(s)	768
HapII	CCGG	1 cut(s)	159
HgaI	GACGC	2 cut(s)	220, 275
HhaI	GCGC	1 cut(s)	112
Hin1I	GRCGYC	1 cut(s)	212
Hin1II	CATG	6 cut(s)	37, 74, 137, 232, 673, 746
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HincII	GTYRAC	1 cut(s)	210
HindII	GTYRAC	1 cut(s)	210
HinfI	GANTC	3 cut(s)	5, 137, 620
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	4 cut(s)	159, 269, 275, 629
Hpy166II	GTNNAC	3 cut(s)	210, 418, 850
Hpy188I	TCNGA	3 cut(s)	46, 457, 931
Hpy188III	TCNNGA	4 cut(s)	50, 71, 624, 653
Hpy8I	GTNNAC	3 cut(s)	210, 418, 850
Hpy99I	CGWCG	1 cut(s)	912
HpyCH4III	ACNGT	2 cut(s)	257, 462
HpyCH4IV	ACGT	2 cut(s)	472, 910
HpyF10VI	GCNNNNNNNGC	3 cut(s)	716, 732, 940
HpyF3I	CTNAG	4 cut(s)	243, 372, 435, 750
HpySE526I	ACGT	2 cut(s)	472, 910
Hsp92I	GRCGYC	1 cut(s)	212
Hsp92II	CATG	6 cut(s)	37, 74, 137, 232, 673, 746
HspAI	GCGC	1 cut(s)	110
Kzo9I	GATC	7 cut(s)	46, 67, 76, 164, 768, 953, 957
Lsp1109I	GCAGC	1 cut(s)	773
LweI	GCATC	1 cut(s)	622
MaeII	ACGT	2 cut(s)	472, 910
MaeIII	GTNAC	4 cut(s)	263, 522, 617, 696
MalI	GATC	7 cut(s)	48, 69, 78, 166, 770, 955, 959
MboI	GATC	7 cut(s)	46, 67, 76, 164, 768, 953, 957
MboII	GAAGA	7 cut(s)	86, 89, 174, 634, 641, 701, 976
MfeI	CAATTG	2 cut(s)	316, 606
MflI	RGATCY	2 cut(s)	46, 768
MluCI	AATT	6 cut(s)	316, 572, 579, 606, 692, 787
MlyI	GAGTC	1 cut(s)	614
MmeI	TCCRAC	1 cut(s)	217
MroXI	GAANNNNTTC	2 cut(s)	88, 854
MseI	TTAA	2 cut(s)	566, 950
MslI	CAYNNNNRTG	2 cut(s)	62, 705
MspA1I	CMGCKG	1 cut(s)	764
MspCI	CTTAAG	1 cut(s)	949
MspI	CCGG	1 cut(s)	159
MunI	CAATTG	2 cut(s)	316, 606
MwoI	GCNNNNNNNGC	3 cut(s)	716, 732, 940
NdeII	GATC	7 cut(s)	46, 67, 76, 164, 768, 953, 957
NlaIII	CATG	6 cut(s)	37, 74, 137, 232, 673, 746
NlaIV	GGNNCC	1 cut(s)	802
NmuCI	GTSAC	2 cut(s)	263, 617
NspI	RCATGY	1 cut(s)	746
OliI	CACNNNNGTG	1 cut(s)	62
PaeI	GCATGC	1 cut(s)	746
PagI	TCATGA	1 cut(s)	70
PdmI	GAANNNNTTC	2 cut(s)	88, 854
PfeI	GAWTC	1 cut(s)	137
PflFI	GACNNNGTC	1 cut(s)	422
PkrI	GCNGC	1 cut(s)	763
PleI	GAGTC	1 cut(s)	614
PpsI	GAGTC	1 cut(s)	614
PpuMI	RGGWCCY	1 cut(s)	800
Psp5II	RGGWCCY	1 cut(s)	800
PspFI	CCCAGC	1 cut(s)	764
PspN4I	GGNNCC	1 cut(s)	802
PspPI	GGNCC	1 cut(s)	800
PspPPI	RGGWCCY	1 cut(s)	800
PsuI	RGATCY	2 cut(s)	46, 768
PsyI	GACNNNGTC	1 cut(s)	422
PvuII	CAGCTG	1 cut(s)	764
RseI	CAYNNNNRTG	2 cut(s)	62, 705
SaqAI	TTAA	2 cut(s)	566, 950
SatI	GCNGC	1 cut(s)	762
Sau3AI	GATC	7 cut(s)	46, 67, 76, 164, 768, 953, 957
Sau96I	GGNCC	1 cut(s)	800
SchI	GAGTC	1 cut(s)	614
SfaNI	GCATC	1 cut(s)	622
SinI	GGWCC	1 cut(s)	800
SmiMI	CAYNNNNRTG	2 cut(s)	62, 705
SmlI	CTYRAG	1 cut(s)	949
SmoI	CTYRAG	1 cut(s)	949
SphI	GCATGC	1 cut(s)	746
Sse9I	AATT	6 cut(s)	316, 572, 579, 606, 692, 787
SsiI	CCGC	3 cut(s)	190, 377, 864
SspI	AATATT	1 cut(s)	331
TaaI	ACNGT	2 cut(s)	257, 462
TaiI	ACGT	2 cut(s)	475, 913
TaqI	TCGA	4 cut(s)	82, 339, 426, 956
TasI	AATT	6 cut(s)	316, 572, 579, 606, 692, 787
TfiI	GAWTC	1 cut(s)	137
Tru1I	TTAA	2 cut(s)	566, 950
Tru9I	TTAA	2 cut(s)	566, 950
TscAI	CASTG	2 cut(s)	508, 707
TseFI	GTSAC	2 cut(s)	263, 617
TseI	GCWGC	1 cut(s)	761
Tsp45I	GTSAC	2 cut(s)	263, 617
TspDTI	ATGAA	3 cut(s)	458, 782, 885
TspRI	CASTG	2 cut(s)	508, 707
Tth111I	GACNNNGTC	1 cut(s)	422
Vha464I	CTTAAG	1 cut(s)	949
VpaK11BI	GGWCC	1 cut(s)	800
XapI	RAATTY	1 cut(s)	572
XceI	RCATGY	1 cut(s)	746
XmiI	GTMKAC	1 cut(s)	417
XmnI	GAANNNNTTC	2 cut(s)	88, 854

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.