Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005986

Physical Location & Seq

Genomic Coordinates Forward (+)

10536261 .. 10540786

Gene Structure 4526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00341870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGACGGCCAGTATTGAAGGACGACCAGCTGATGGGTTGTTGGGCTGTCGGTCAATTAAGCAAGGCCACCGACAAGGACTTCCTTTTCTCAAGGAAAATAGTCGGTCCTTGCTCTCTATCTCATCTCTCTCACTCTCCACCGAGATTGGTTTGCTCGGCCTAGTCAGCCACCGAGTTGACTCACCGGGAAGGCCTCGTCCTCCCGAGCAAGGAGCAGCTCACCATTCTTGTACCGCAAGCCTTCAAGTCCCTACTCCTCGTCCTCGCCGATCAACGGCCGCGCTCTCATTTCCGCGCTCCGGCTCCGGCTCGGCGACGTCGTCTTACAACTCCGAGGTGGACTCGGTCCCCGATCTACTACGCCTAGCCACTTCGATTGCGGGCAATAAGTCCGCAGACACCGTAAGGCGGTCTCTCCCCGAGCTTAGGAGAAGTTCCTTGCCTTCAATAGTTACACAATCAACCGATCCCGGTCGTAAAGTGGTCCGCCGGGTCACCATTGGACCGGAGCCTCGGATAAACCATCGTGTTCTCTTGCGAGTAGACAAGAGAGCGTCAGAAGCCTTCGCCAAGCCGGCATCGTCCGTTGCATCTTCATCTTCAAGGATGACAACTTCTTCATTGGACGGTAGTGCTAGTTATCCGGACACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0001578 GO:0001669 GO:0002177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007276 GO:0007283 GO:0008150 GO:0009987 GO:0012505 GO:0015630 GO:0016043 GO:0019953 GO:0022414 GO:0022607 GO:0030030 GO:0030031 GO:0030141 GO:0031410 GO:0031982 GO:0032501 GO:0032504 GO:0035082 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044782 GO:0048232 GO:0048609 GO:0051704 GO:0060271 GO:0070925 GO:0071840 GO:0097223 GO:0097708 GO:0099503 GO:0120031 GO:0120036

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4

Protein Analysis

217

Amino Acids

23.02

Weight (kDa)

11.09

Isoelectric Point (pI)

70.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54270
fragaria_vesca	FvH4_7g05160 FvH4_7g05160 FvH4_7g05160 FvH4_7g05160 FvH4_7g05160 FvH4_7g05160
malus_domestica	MD02G1260600.v1.1 MD02G1260700.v1.1
prunus_persica	Prupe.5G001900_v2.0.a1 Prupe.5G001900_v2.0.a1 Prupe.5G001900_v2.0.a1 Prupe.5G001900_v2.0.a1 Prupe.5G001900_v2.0.a1 Prupe.5G001900_v2.0.a1
pyrus_communis	pycom02g22250
rosa_chinensis	RchiOBHm_Chr1g0331691
rosa_laevigata	RLG00000029723
rosa_multiflora	Rmu_sc0005044.1_g000009
rosa_roxburghii	Rroxscaffold_4G00318910 Rroxscaffold_5G00341870
rosa_rugosa	Rorug01G0095400
rosa_samantha	Rh1AG119300 Rh1BG090800 Rh1CG114400 Rh1DG124800
rosa_wichuraiana	Rw1G009640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	320
AccB7I	CCANNNNNTGG	1 cut(s)	32
AccI	GTMKAC	1 cut(s)	543
AccII	CGCG	2 cut(s)	281, 295
AccIII	TCCGGA	1 cut(s)	643
AciI	CCGC	7 cut(s)	234, 279, 293, 380, 393, 409, 487
AclWI	GGATC	1 cut(s)	461
AcoI	YGGCCR	2 cut(s)	6, 276
AcyI	GRCGYC	1 cut(s)	317
AfaI	GTAC	1 cut(s)	232
AfiI	CCNNNNNNNGG	6 cut(s)	32, 209, 274, 299, 408, 426
AflIII	ACRYGT	1 cut(s)	648
AgsI	TTSAA	4 cut(s)	17, 245, 447, 603
AluBI	AGCT	3 cut(s)	29, 218, 424
AluI	AGCT	3 cut(s)	29, 218, 424
Alw26I	GTCTC	1 cut(s)	417
AlwI	GGATC	1 cut(s)	461
Ama87I	CYCGRG	2 cut(s)	203, 419
Aor13HI	TCCGGA	1 cut(s)	643
AoxI	GGCC	5 cut(s)	6, 64, 157, 191, 276
ApeKI	GCWGC	1 cut(s)	215
AspLEI	GCGC	2 cut(s)	283, 297
AspS9I	GGNCC	4 cut(s)	105, 346, 484, 503
AsuC2I	CCSGG	3 cut(s)	186, 471, 491
AsuHPI	GGTGA	3 cut(s)	174, 212, 487
AvaI	CYCGRG	2 cut(s)	203, 419
AvaII	GGWCC	4 cut(s)	105, 346, 484, 503
BbvI	GCAGC	1 cut(s)	227
BccI	CCATC	2 cut(s)	26, 531
BceAI	ACGGC	2 cut(s)	21, 291
BcnI	CCSGG	3 cut(s)	186, 471, 491
BcoDI	GTCTC	1 cut(s)	417
BfaI	CTAG	3 cut(s)	161, 365, 636
BglI	GCCNNNNNGGC	1 cut(s)	575
BisI	GCNGC	2 cut(s)	216, 279
BlsI	GCNGC	2 cut(s)	217, 280
Bme1390I	CCNGG	3 cut(s)	186, 471, 491
Bme18I	GGWCC	4 cut(s)	105, 346, 484, 503
BmeT110I	CYCGRG	2 cut(s)	203, 419
BmgT120I	GGNCC	4 cut(s)	105, 346, 484, 503
BmiI	GGNNCC	3 cut(s)	304, 348, 510
BmrFI	CCNGG	3 cut(s)	186, 471, 491
BmsI	GCATC	2 cut(s)	587, 599
BplI	GAGNNNNNCTC	2 cut(s)	326, 358
Bpu10I	CCTNAGC	1 cut(s)	425
BpuEI	CTTGAG	1 cut(s)	74
BpuMI	CCSGG	3 cut(s)	186, 471, 491
BsaAI	YACGTR	1 cut(s)	651
BsaHI	GRCGYC	1 cut(s)	317
BsaI	GGTCTC	1 cut(s)	417
BsaJI	CCNNGG	2 cut(s)	333, 512
BsaWI	WCCGGW	2 cut(s)	505, 643
Bsc4I	CCNNNNNNNGG	6 cut(s)	32, 209, 274, 299, 408, 426
Bse118I	RCCGGY	1 cut(s)	574
Bse1I	ACTGG	1 cut(s)	9
BseAI	TCCGGA	1 cut(s)	643
BseDI	CCNNGG	2 cut(s)	333, 512
BseGI	GGATG	1 cut(s)	612
BseLI	CCNNNNNNNGG	6 cut(s)	32, 209, 274, 299, 408, 426
BseNI	ACTGG	1 cut(s)	9
BseRI	GAGGAG	1 cut(s)	246
BseX3I	CGGCCG	1 cut(s)	276
BseXI	GCAGC	1 cut(s)	227
Bsh1236I	CGCG	2 cut(s)	281, 295
Bsh1285I	CGRYCG	2 cut(s)	279, 475
BshFI	GGCC	5 cut(s)	8, 66, 159, 193, 278
BsiEI	CGRYCG	2 cut(s)	279, 475
BsiHKCI	CYCGRG	2 cut(s)	203, 419
BsiSI	CCGG	8 cut(s)	185, 300, 306, 471, 490, 506, 575, 644
BslFI	GGGAC	2 cut(s)	233, 332
BslI	CCNNNNNNNGG	6 cut(s)	32, 209, 274, 299, 408, 426
BsmAI	GTCTC	1 cut(s)	417
BsmFI	GGGAC	2 cut(s)	233, 332
BsnI	GGCC	5 cut(s)	8, 66, 159, 193, 278
Bso31I	GGTCTC	1 cut(s)	417
BsoBI	CYCGRG	2 cut(s)	203, 419
Bsp13I	TCCGGA	1 cut(s)	643
Bsp143I	GATC	3 cut(s)	269, 352, 466
BspACI	CCGC	7 cut(s)	234, 279, 293, 380, 393, 409, 487
BspANI	GGCC	5 cut(s)	8, 66, 159, 193, 278
BspEI	TCCGGA	1 cut(s)	643
BspFNI	CGCG	2 cut(s)	281, 295
BspLI	GGNNCC	3 cut(s)	304, 348, 510
BspPI	GGATC	1 cut(s)	461
BspTNI	GGTCTC	1 cut(s)	417
BsrFI	RCCGGY	1 cut(s)	574
BsrI	ACTGG	1 cut(s)	9
BssAI	RCCGGY	1 cut(s)	574
BssECI	CCNNGG	2 cut(s)	333, 512
BssMI	GATC	3 cut(s)	269, 352, 466
BssNI	GRCGYC	1 cut(s)	317
Bst4CI	ACNGT	2 cut(s)	403, 629
BstACI	GRCGYC	1 cut(s)	317
BstBAI	YACGTR	1 cut(s)	651
BstC8I	GCNNGC	3 cut(s)	238, 382, 576
BstDEI	CTNAG	1 cut(s)	425
BstEII	GGTNACC	1 cut(s)	493
BstF5I	GGATG	1 cut(s)	612
BstFNI	CGCG	2 cut(s)	281, 295
BstHHI	GCGC	2 cut(s)	283, 297
BstKTI	GATC	3 cut(s)	272, 355, 469
BstMAI	GTCTC	1 cut(s)	417
BstMBI	GATC	3 cut(s)	269, 352, 466
BstMCI	CGRYCG	2 cut(s)	279, 475
BstMWI	GCNNNNNNNGC	3 cut(s)	165, 560, 575
BstPI	GGTNACC	1 cut(s)	493
BstSCI	CCNGG	3 cut(s)	184, 469, 489
BstUI	CGCG	2 cut(s)	281, 295
BstV1I	GCAGC	1 cut(s)	227
BstZI	CGGCCG	1 cut(s)	276
BsuRI	GGCC	5 cut(s)	8, 66, 159, 193, 278
BtsCI	GGATG	1 cut(s)	612
Cac8I	GCNNGC	3 cut(s)	238, 382, 576
CfoI	GCGC	2 cut(s)	283, 297
Cfr10I	RCCGGY	1 cut(s)	574
Cfr13I	GGNCC	4 cut(s)	105, 346, 484, 503
CseI	GACGC	1 cut(s)	543
Csp6I	GTAC	1 cut(s)	231
CspCI	CAANNNNNGTGG	4 cut(s)	127, 162, 358, 393
CviQI	GTAC	1 cut(s)	231
DdeI	CTNAG	1 cut(s)	425
DpnI	GATC	3 cut(s)	271, 354, 468
DpnII	GATC	3 cut(s)	269, 352, 466
EaeI	YGGCCR	2 cut(s)	6, 276
EagI	CGGCCG	1 cut(s)	276
EciI	GGCGGA	1 cut(s)	476
EclXI	CGGCCG	1 cut(s)	276
Eco147I	AGGCCT	1 cut(s)	193
Eco31I	GGTCTC	1 cut(s)	417
Eco47I	GGWCC	4 cut(s)	105, 346, 484, 503
Eco52I	CGGCCG	1 cut(s)	276
Eco88I	CYCGRG	2 cut(s)	203, 419
Eco91I	GGTNACC	1 cut(s)	493
EcoO65I	GGTNACC	1 cut(s)	493
FaqI	GGGAC	2 cut(s)	233, 332
FauI	CCCGC	1 cut(s)	373
FblI	GTMKAC	1 cut(s)	543
Fnu4HI	GCNGC	2 cut(s)	216, 279
FokI	GGATG	1 cut(s)	619
Fsp4HI	GCNGC	2 cut(s)	216, 279
FspBI	CTAG	3 cut(s)	161, 365, 636
GlaI	GCGC	2 cut(s)	282, 296
GluI	GCNGC	2 cut(s)	216, 279
HaeIII	GGCC	5 cut(s)	8, 66, 159, 193, 278
HapII	CCGG	8 cut(s)	185, 300, 306, 471, 490, 506, 575, 644
HgaI	GACGC	1 cut(s)	543
HhaI	GCGC	2 cut(s)	283, 297
Hin1I	GRCGYC	1 cut(s)	317
Hin6I	GCGC	2 cut(s)	281, 295
HinP1I	GCGC	2 cut(s)	281, 295
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HinfI	GANTC	2 cut(s)	179, 341
HpaII	CCGG	8 cut(s)	185, 300, 306, 471, 490, 506, 575, 644
HphI	GGTGA	3 cut(s)	174, 212, 487
Hpy166II	GTNNAC	3 cut(s)	178, 340, 544
Hpy188I	TCNGA	3 cut(s)	334, 516, 559
Hpy188III	TCNNGA	2 cut(s)	203, 644
Hpy8I	GTNNAC	3 cut(s)	178, 340, 544
Hpy99I	CGWCG	2 cut(s)	319, 322
HpyAV	CCTTC	5 cut(s)	11, 183, 251, 453, 574
HpyCH4III	ACNGT	2 cut(s)	403, 629
HpyCH4IV	ACGT	2 cut(s)	317, 650
HpyCH4V	TGCA	1 cut(s)	590
HpyF10VI	GCNNNNNNNGC	3 cut(s)	165, 560, 575
HpyF3I	CTNAG	1 cut(s)	425
HpySE526I	ACGT	2 cut(s)	317, 650
Hsp92I	GRCGYC	1 cut(s)	317
HspAI	GCGC	2 cut(s)	281, 295
Kpn2I	TCCGGA	1 cut(s)	643
KroI	GCCGGC	1 cut(s)	574
KroNI	GCCGGC	1 cut(s)	576
Kzo9I	GATC	3 cut(s)	269, 352, 466
LmnI	GCTCC	4 cut(s)	212, 302, 308, 508
LpnPI	CCDG	9 cut(s)	22, 39, 198, 313, 319, 484, 503, 519, 588
Lsp1109I	GCAGC	1 cut(s)	227
LweI	GCATC	2 cut(s)	587, 599
MaeI	CTAG	3 cut(s)	161, 365, 636
MaeII	ACGT	2 cut(s)	317, 650
MaeIII	GTNAC	2 cut(s)	451, 493
MalI	GATC	3 cut(s)	271, 354, 468
MboI	GATC	3 cut(s)	269, 352, 466
MboII	GAAGA	3 cut(s)	585, 591, 609
MluCI	AATT	1 cut(s)	54
MlyI	GAGTC	2 cut(s)	173, 335
MnlI	CCTC	6 cut(s)	204, 210, 267, 273, 328, 522
MroI	TCCGGA	1 cut(s)	643
MroNI	GCCGGC	1 cut(s)	574
MseI	TTAA	1 cut(s)	57
MspA1I	CMGCKG	1 cut(s)	29
MspI	CCGG	8 cut(s)	185, 300, 306, 471, 490, 506, 575, 644
MspR9I	CCNGG	3 cut(s)	186, 471, 491
MvnI	CGCG	2 cut(s)	281, 295
MwoI	GCNNNNNNNGC	3 cut(s)	165, 560, 575
NaeI	GCCGGC	1 cut(s)	576
NciI	CCSGG	3 cut(s)	186, 471, 491
NdeII	GATC	3 cut(s)	269, 352, 466
NgoMIV	GCCGGC	1 cut(s)	574
NlaIV	GGNNCC	3 cut(s)	304, 348, 510
NmeAIII	GCCGAG	2 cut(s)	135, 290
NmuCI	GTSAC	1 cut(s)	493
PceI	AGGCCT	1 cut(s)	193
PcsI	WCGNNNNNNNCGW	2 cut(s)	265, 317
PdiI	GCCGGC	1 cut(s)	576
PflFI	GACNNNGTC	2 cut(s)	319, 344
PflMI	CCANNNNNTGG	1 cut(s)	32
PkrI	GCNGC	2 cut(s)	217, 280
PleI	GAGTC	2 cut(s)	173, 335
PpsI	GAGTC	2 cut(s)	173, 335
Ppu21I	YACGTR	1 cut(s)	651
PspEI	GGTNACC	1 cut(s)	493
PspN4I	GGNNCC	3 cut(s)	304, 348, 510
PspPI	GGNCC	4 cut(s)	105, 346, 484, 503
PsyI	GACNNNGTC	2 cut(s)	319, 344
PvuII	CAGCTG	1 cut(s)	29
RsaI	GTAC	1 cut(s)	232
RsaNI	GTAC	1 cut(s)	231
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	2 cut(s)	216, 279
Sau3AI	GATC	3 cut(s)	269, 352, 466
Sau96I	GGNCC	4 cut(s)	105, 346, 484, 503
SchI	GAGTC	2 cut(s)	173, 335
ScrFI	CCNGG	3 cut(s)	186, 471, 491
SetI	ASST	6 cut(s)	31, 220, 320, 339, 426, 653
SfaNI	GCATC	2 cut(s)	587, 599
SinI	GGWCC	4 cut(s)	105, 346, 484, 503
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	1 cut(s)	54
SseBI	AGGCCT	1 cut(s)	193
SsiI	CCGC	7 cut(s)	234, 279, 293, 380, 393, 409, 487
SspMI	CTAG	3 cut(s)	161, 365, 636
StuI	AGGCCT	1 cut(s)	193
StyD4I	CCNGG	3 cut(s)	184, 469, 489
TaaI	ACNGT	2 cut(s)	403, 629
TaiI	ACGT	2 cut(s)	320, 653
TaqI	TCGA	1 cut(s)	374
TaqII	GACCGA	3 cut(s)	39, 93, 334
TasI	AATT	1 cut(s)	54
TauI	GCSGC	1 cut(s)	281
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TseFI	GTSAC	1 cut(s)	493
TseI	GCWGC	1 cut(s)	215
Tsp45I	GTSAC	1 cut(s)	493
TspDTI	ATGAA	2 cut(s)	585, 609
TspGWI	ACGGA	1 cut(s)	574
Tth111I	GACNNNGTC	2 cut(s)	319, 344
Van91I	CCANNNNNTGG	1 cut(s)	32
VpaK11BI	GGWCC	4 cut(s)	105, 346, 484, 503
XmiI	GTMKAC	1 cut(s)	543
XspI	CTAG	3 cut(s)	161, 365, 636
ZraI	GACGTC	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.