Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0005986

Physical Location & Seq

Genomic Coordinates Reverse (-)

20500429 .. 20503616

Gene Structure 3188 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG119300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGGACTCTCGGCTCAATGGCTCTGCTCGTCTCATGCTGGTTTCAGATCTTGATTACACAATGGTGGATCATGATGATCCTCGAAATACTTCTCTTCTTCGGTTCAATGCGCTATGGGAAGCATATTATCGCCATGATTCTCTGCTCGTATTTTCAACCGGAAGATCACCTCTATCTTACAAACCCTTGCGGAATGAGAAGCCCTTGTTGACGCCCGATATTACTATCATGTCTGTTGGAACTGAGATTATCTACGGTGAGGGTGACGCAAACGCAATGCTACCCGATGATGGTTGGCAACACTATCTCAATCACAATTGGGATAGAAATATTGTTGTCGAGGAAACAACCAAGTTTCCTCAACTAACTCCTCAGGCGGAGGCAGAGCAACGACCTCACAAGGTTAGCTTTTATGTAGACAAGGTCGAGGCAACTGAGATAATGAATGTTCTATCAGAACGGTTGGCGAAACGTGGGTTAGATATAAAGATAATATATAGCAGTGGTATTGCTTTGGATGTGTTACCAAAAGGTGCTGGCAAAGGGCAAGCTCTTGCATATCTGTTAAAGAAATTCAAAATTGATGGCAAACTGCCCTGCAATACAATTGTTTGTGGTGACTCTGGAAATGATGCTGAACTCTTCACTCTTCCTGAAGTCTATGGTGTCATGGTTGGTAATGCACAGGAAGAATTGTTACACTGGTATGCACACAACGCAAAGAGCAATAGTCGCATATTGCATGCAACTGAGAGATGTGCAGCTGGGATCTTACAAGCCATTGGTAATTTTCATTTAGGTCCCAATGTATCGCCAAGAGATATCAAAGACTTCCAAAAGTGCAAAGTGAACATTTTCAGCCCCGCTTATGAAGTGGTAAAGTTCTATCTGTTTTATGAGAAATGGCGACGTGCAGAGGTAGAGAAATCAGAGCAGTATATGCAGAACTTAAGATCGATCTTTCATTCATTGGGTGTCTTTGTCCATCCCTCGGGAGTGGAGCTACCTCTCCACCAGTGCATAGATGCAATGGCAAGGTTGTATGGAGATAAGCAAGGAAATCAATTTTGGACCTGGGTGGATCAATTAACTTCAGCTCAAATTGGCTCTGACACATGGCTGGTGAAGTTCTACAAGTGGGAACTGAATGAGAATGAGCGGCAATGCACGTTAACTACAGTGTTAATAAAGTCACAGGTTGAGGTACCAGATACTTTCACTTGGCTGCACATGCATCAGACATGGTTGGATGGTTTTGCAATTGCAAATGCAGAAAGATGGTTGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

S6PP S6PP_C

Protein Analysis

429

Amino Acids

49.13

Weight (kDa)

5.89

Isoelectric Point (pI)

37.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S6PP	PF05116	10 - 264	4.2e-94	Sucrose-6F-phosphate phosphohydrolase
Hydrolase_3	PF08282	116 - 243	2.2e-13	haloacid dehalogenase-like hydrolase
S6PP_C	PF08472	288 - 416	7.4e-58	Sucrose-6-phosphate phosphohydrolase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54270
fragaria_vesca	FvH4_7g05160 FvH4_7g05160 FvH4_7g05160 FvH4_7g05160 FvH4_7g05160 FvH4_7g05160
malus_domestica	MD02G1260600.v1.1 MD02G1260700.v1.1
prunus_persica	Prupe.5G001900_v2.0.a1 Prupe.5G001900_v2.0.a1 Prupe.5G001900_v2.0.a1 Prupe.5G001900_v2.0.a1 Prupe.5G001900_v2.0.a1 Prupe.5G001900_v2.0.a1
pyrus_communis	pycom02g22250
rosa_chinensis	RchiOBHm_Chr1g0331691
rosa_laevigata	RLG00000029723
rosa_multiflora	Rmu_sc0005044.1_g000009
rosa_roxburghii	Rroxscaffold_4G00318910 Rroxscaffold_5G00341870
rosa_rugosa	Rorug01G0095400
rosa_samantha	Rh1AG119300 Rh1BG090800 Rh1CG114400 Rh1DG124800
rosa_wichuraiana	Rw1G009640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1204
AccB1I	GGYRCC	1 cut(s)	1204
AccBSI	CCGCTC	1 cut(s)	1159
AccI	GTMKAC	1 cut(s)	417
AciI	CCGC	4 cut(s)	190, 377, 864, 1159
AclWI	GGATC	4 cut(s)	71, 75, 776, 1089
AcsI	RAATTY	1 cut(s)	572
AcuI	CTGAAG	2 cut(s)	675, 1077
AcyI	GRCGYC	1 cut(s)	212
AfaI	GTAC	1 cut(s)	1206
AfiI	CCNNNNNNNGG	2 cut(s)	290, 991
AflII	CTTAAG	1 cut(s)	949
AgsI	TTSAA	3 cut(s)	106, 156, 577
AjiI	CACGTC	1 cut(s)	911
AjnI	CCWGG	1 cut(s)	1073
AjuI	GAANNNNNNNTTGG	2 cut(s)	1051, 1083
AleI	CACNNNNGTG	1 cut(s)	62
AluBI	AGCT	5 cut(s)	408, 551, 764, 1003, 1097
AluI	AGCT	5 cut(s)	408, 551, 764, 1003, 1097
Alw26I	GTCTC	1 cut(s)	35
AlwI	GGATC	4 cut(s)	71, 75, 776, 1089
Ama87I	CYCGRG	1 cut(s)	991
ApeKI	GCWGC	2 cut(s)	761, 1225
ApoI	RAATTY	1 cut(s)	572
Asp700I	GAANNNNTTC	2 cut(s)	88, 854
Asp718I	GGTACC	1 cut(s)	1204
AspLEI	GCGC	1 cut(s)	112
AspS9I	GGNCC	2 cut(s)	800, 1071
AsuHPI	GGTGA	5 cut(s)	159, 269, 275, 629, 1135
AvaI	CYCGRG	1 cut(s)	991
AvaII	GGWCC	2 cut(s)	800, 1071
AxyI	CCTNAGG	1 cut(s)	372
BanI	GGYRCC	1 cut(s)	1204
BarI	GAAGNNNNNNTAC	2 cut(s)	681, 713
BbvI	GCAGC	2 cut(s)	773, 1212
BccI	CCATC	5 cut(s)	284, 578, 993, 1244, 1272
BciT130I	CCWGG	1 cut(s)	1075
BcoDI	GTCTC	1 cut(s)	35
BfmI	CTRYAG	1 cut(s)	1176
BfrI	CTTAAG	1 cut(s)	949
BglII	AGATCT	1 cut(s)	46
BisI	GCNGC	3 cut(s)	762, 1160, 1226
BlsI	GCNGC	3 cut(s)	763, 1161, 1227
Bme1390I	CCNGG	1 cut(s)	1075
Bme18I	GGWCC	2 cut(s)	800, 1071
BmeT110I	CYCGRG	1 cut(s)	991
BmgBI	CACGTC	1 cut(s)	911
BmgT120I	GGNCC	2 cut(s)	800, 1071
BmiI	GGNNCC	2 cut(s)	802, 1206
BmrFI	CCNGG	1 cut(s)	1075
BmsI	GCATC	3 cut(s)	622, 1015, 1243
Bsa29I	ATCGAT	1 cut(s)	956
BsaHI	GRCGYC	1 cut(s)	212
BsaJI	CCNNGG	2 cut(s)	990, 1074
BsaWI	WCCGGW	1 cut(s)	158
Bsc4I	CCNNNNNNNGG	2 cut(s)	290, 991
Bse1I	ACTGG	2 cut(s)	707, 1015
Bse21I	CCTNAGG	1 cut(s)	372
Bse3DI	GCAATG	3 cut(s)	282, 1035, 1169
BseBI	CCWGG	1 cut(s)	1075
BseCI	ATCGAT	1 cut(s)	956
BseDI	CCNNGG	2 cut(s)	990, 1074
BseGI	GGATG	3 cut(s)	523, 985, 1255
BseLI	CCNNNNNNNGG	2 cut(s)	290, 991
BseMI	GCAATG	3 cut(s)	282, 1035, 1169
BseMII	CTCAG	4 cut(s)	234, 386, 426, 741
BseNI	ACTGG	2 cut(s)	707, 1015
BseRI	GAGGAG	1 cut(s)	360
BseXI	GCAGC	2 cut(s)	773, 1212
BseYI	CCCAGC	1 cut(s)	764
BsgI	GTGCAG	3 cut(s)	780, 933, 1211
BshNI	GGYRCC	1 cut(s)	1204
BshVI	ATCGAT	1 cut(s)	956
BsiHKCI	CYCGRG	1 cut(s)	991
BsiSI	CCGG	1 cut(s)	159
BslFI	GGGAC	1 cut(s)	786
BslI	CCNNNNNNNGG	2 cut(s)	290, 991
BsmAI	GTCTC	1 cut(s)	35
BsmBI	CGTCTC	1 cut(s)	35
BsmFI	GGGAC	1 cut(s)	786
BsoBI	CYCGRG	1 cut(s)	991
Bsp143I	GATC	8 cut(s)	46, 67, 76, 164, 768, 953, 957, 1081
BspACI	CCGC	4 cut(s)	190, 377, 864, 1159
BspCNI	CTCAG	4 cut(s)	235, 385, 427, 742
BspDI	ATCGAT	1 cut(s)	956
BspHI	TCATGA	1 cut(s)	70
BspLI	GGNNCC	2 cut(s)	802, 1206
BspPI	GGATC	4 cut(s)	71, 75, 776, 1089
BspT107I	GGYRCC	1 cut(s)	1204
BspTI	CTTAAG	1 cut(s)	949
BsrBI	CCGCTC	1 cut(s)	1159
BsrDI	GCAATG	3 cut(s)	282, 1035, 1169
BsrI	ACTGG	2 cut(s)	707, 1015
BssECI	CCNNGG	2 cut(s)	990, 1074
BssMI	GATC	8 cut(s)	46, 67, 76, 164, 768, 953, 957, 1081
BssNI	GRCGYC	1 cut(s)	212
Bst2UI	CCWGG	1 cut(s)	1075
Bst4CI	ACNGT	3 cut(s)	257, 462, 1180
Bst6I	CTCTTC	3 cut(s)	99, 647, 654
BstACI	GRCGYC	1 cut(s)	212
BstAFI	CTTAAG	1 cut(s)	949
BstAPI	GCANNNNNTGC	1 cut(s)	940
BstC8I	GCNNGC	3 cut(s)	538, 549, 744
BstDEI	CTNAG	4 cut(s)	243, 372, 435, 750
BstF5I	GGATG	3 cut(s)	523, 985, 1255
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	8 cut(s)	49, 70, 79, 167, 771, 956, 960, 1084
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	8 cut(s)	46, 67, 76, 164, 768, 953, 957, 1081
BstMWI	GCNNNNNNNGC	4 cut(s)	716, 732, 940, 1231
BstNI	CCWGG	1 cut(s)	1075
BstNSI	RCATGY	2 cut(s)	746, 1234
BstSCI	CCNGG	1 cut(s)	1073
BstSFI	CTRYAG	1 cut(s)	1176
BstV1I	GCAGC	2 cut(s)	773, 1212
BstX2I	RGATCY	2 cut(s)	46, 768
BstYI	RGATCY	2 cut(s)	46, 768
Bsu15I	ATCGAT	1 cut(s)	956
Bsu36I	CCTNAGG	1 cut(s)	372
BsuTUI	ATCGAT	1 cut(s)	956
BtrI	CACGTC	1 cut(s)	911
BtsCI	GGATG	3 cut(s)	523, 985, 1255
BtsI	GCAGTG	1 cut(s)	508
BtsIMutI	CAGTG	4 cut(s)	508, 700, 1022, 1185
Cac8I	GCNNGC	3 cut(s)	538, 549, 744
CciI	TCATGA	1 cut(s)	70
CfoI	GCGC	1 cut(s)	112
Cfr13I	GGNCC	2 cut(s)	800, 1071
ClaI	ATCGAT	1 cut(s)	956
CseI	GACGC	2 cut(s)	220, 275
Csp6I	GTAC	1 cut(s)	1205
CviAII	CATG	9 cut(s)	34, 71, 134, 229, 670, 743, 1116, 1231, 1242
CviQI	GTAC	1 cut(s)	1205
DdeI	CTNAG	4 cut(s)	243, 372, 435, 750
DpnI	GATC	8 cut(s)	48, 69, 78, 166, 770, 955, 959, 1083
DpnII	GATC	8 cut(s)	46, 67, 76, 164, 768, 953, 957, 1081
Eam1104I	CTCTTC	3 cut(s)	99, 647, 654
EarI	CTCTTC	3 cut(s)	99, 647, 654
EciI	GGCGGA	1 cut(s)	392
Eco32I	GATATC	1 cut(s)	823
Eco47I	GGWCC	2 cut(s)	800, 1071
Eco57I	CTGAAG	2 cut(s)	675, 1077
Eco81I	CCTNAGG	1 cut(s)	372
Eco88I	CYCGRG	1 cut(s)	991
EcoO109I	RGGNCCY	1 cut(s)	800
EcoRII	CCWGG	1 cut(s)	1073
EcoRV	GATATC	1 cut(s)	823
EcoT22I	ATGCAT	1 cut(s)	1236
Esp3I	CGTCTC	1 cut(s)	35
FaeI	CATG	9 cut(s)	37, 74, 137, 232, 673, 746, 1119, 1234, 1245
FalI	AAGNNNNNCTT	2 cut(s)	392, 424
FaqI	GGGAC	1 cut(s)	786
FatI	CATG	9 cut(s)	33, 70, 133, 228, 669, 742, 1115, 1230, 1241
FauI	CCCGC	1 cut(s)	871
FblI	GTMKAC	1 cut(s)	417
Fnu4HI	GCNGC	3 cut(s)	762, 1160, 1226
FokI	GGATG	3 cut(s)	530, 972, 1262
Fsp4HI	GCNGC	3 cut(s)	762, 1160, 1226
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	3 cut(s)	762, 1160, 1226
GsaI	CCCAGC	1 cut(s)	768
HapII	CCGG	1 cut(s)	159
HgaI	GACGC	2 cut(s)	220, 275
HhaI	GCGC	1 cut(s)	112
Hin1I	GRCGYC	1 cut(s)	212
Hin1II	CATG	9 cut(s)	37, 74, 137, 232, 673, 746, 1119, 1234, 1245
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HincII	GTYRAC	2 cut(s)	210, 1173
HindII	GTYRAC	2 cut(s)	210, 1173
HinfI	GANTC	3 cut(s)	5, 137, 620
HpaI	GTTAAC	1 cut(s)	1173
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	5 cut(s)	159, 269, 275, 629, 1135
Hpy166II	GTNNAC	4 cut(s)	210, 418, 850, 1173
Hpy188I	TCNGA	5 cut(s)	46, 457, 931, 1111, 1239
Hpy188III	TCNNGA	5 cut(s)	50, 71, 624, 653, 993
Hpy8I	GTNNAC	4 cut(s)	210, 418, 850, 1173
Hpy99I	CGWCG	1 cut(s)	912
HpyCH4III	ACNGT	3 cut(s)	257, 462, 1180
HpyCH4IV	ACGT	3 cut(s)	472, 910, 1169
HpyF10VI	GCNNNNNNNGC	4 cut(s)	716, 732, 940, 1231
HpyF3I	CTNAG	4 cut(s)	243, 372, 435, 750
HpySE526I	ACGT	3 cut(s)	472, 910, 1169
Hsp92I	GRCGYC	1 cut(s)	212
Hsp92II	CATG	9 cut(s)	37, 74, 137, 232, 673, 746, 1119, 1234, 1245
HspAI	GCGC	1 cut(s)	110
KpnI	GGTACC	1 cut(s)	1208
KspAI	GTTAAC	1 cut(s)	1173
Kzo9I	GATC	8 cut(s)	46, 67, 76, 164, 768, 953, 957, 1081
LmnI	GCTCC	1 cut(s)	1000
Lsp1109I	GCAGC	2 cut(s)	773, 1212
LweI	GCATC	3 cut(s)	622, 1015, 1243
MaeII	ACGT	3 cut(s)	472, 910, 1169
MaeIII	GTNAC	5 cut(s)	263, 522, 617, 696, 1191
MalI	GATC	8 cut(s)	48, 69, 78, 166, 770, 955, 959, 1083
MbiI	CCGCTC	1 cut(s)	1159
MboI	GATC	8 cut(s)	46, 67, 76, 164, 768, 953, 957, 1081
MboII	GAAGA	6 cut(s)	86, 89, 174, 634, 641, 701
MfeI	CAATTG	3 cut(s)	316, 606, 1260
MflI	RGATCY	2 cut(s)	46, 768
MlyI	GAGTC	1 cut(s)	614
MmeI	TCCRAC	2 cut(s)	217, 1227
Mph1103I	ATGCAT	1 cut(s)	1236
MroXI	GAANNNNTTC	2 cut(s)	88, 854
MseI	TTAA	5 cut(s)	566, 950, 1088, 1172, 1184
MslI	CAYNNNNRTG	2 cut(s)	62, 705
MspA1I	CMGCKG	1 cut(s)	764
MspCI	CTTAAG	1 cut(s)	949
MspI	CCGG	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	1075
MunI	CAATTG	3 cut(s)	316, 606, 1260
MvaI	CCWGG	1 cut(s)	1075
MwoI	GCNNNNNNNGC	4 cut(s)	716, 732, 940, 1231
NdeII	GATC	8 cut(s)	46, 67, 76, 164, 768, 953, 957, 1081
NlaIII	CATG	9 cut(s)	37, 74, 137, 232, 673, 746, 1119, 1234, 1245
NlaIV	GGNNCC	2 cut(s)	802, 1206
NmuCI	GTSAC	3 cut(s)	263, 617, 1191
NsiI	ATGCAT	1 cut(s)	1236
NspI	RCATGY	2 cut(s)	746, 1234
OliI	CACNNNNGTG	1 cut(s)	62
PaeI	GCATGC	1 cut(s)	746
PagI	TCATGA	1 cut(s)	70
PdmI	GAANNNNTTC	2 cut(s)	88, 854
PfeI	GAWTC	1 cut(s)	137
PflFI	GACNNNGTC	1 cut(s)	422
PkrI	GCNGC	3 cut(s)	763, 1161, 1227
PleI	GAGTC	1 cut(s)	614
PpsI	GAGTC	1 cut(s)	614
PpuMI	RGGWCCY	1 cut(s)	800
Psp5II	RGGWCCY	1 cut(s)	800
Psp6I	CCWGG	1 cut(s)	1073
PspFI	CCCAGC	1 cut(s)	764
PspGI	CCWGG	1 cut(s)	1073
PspN4I	GGNNCC	2 cut(s)	802, 1206
PspPI	GGNCC	2 cut(s)	800, 1071
PspPPI	RGGWCCY	1 cut(s)	800
PsuI	RGATCY	2 cut(s)	46, 768
PsyI	GACNNNGTC	1 cut(s)	422
PvuII	CAGCTG	1 cut(s)	764
RsaI	GTAC	1 cut(s)	1206
RsaNI	GTAC	1 cut(s)	1205
RseI	CAYNNNNRTG	2 cut(s)	62, 705
SaqAI	TTAA	5 cut(s)	566, 950, 1088, 1172, 1184
SatI	GCNGC	3 cut(s)	762, 1160, 1226
Sau3AI	GATC	8 cut(s)	46, 67, 76, 164, 768, 953, 957, 1081
Sau96I	GGNCC	2 cut(s)	800, 1071
SchI	GAGTC	1 cut(s)	614
ScrFI	CCNGG	1 cut(s)	1075
SfaNI	GCATC	3 cut(s)	622, 1015, 1243
SfcI	CTRYAG	1 cut(s)	1176
SinI	GGWCC	2 cut(s)	800, 1071
SmiMI	CAYNNNNRTG	2 cut(s)	62, 705
SmlI	CTYRAG	1 cut(s)	949
SmoI	CTYRAG	1 cut(s)	949
SphI	GCATGC	1 cut(s)	746
SsiI	CCGC	4 cut(s)	190, 377, 864, 1159
SspI	AATATT	1 cut(s)	331
StyD4I	CCNGG	1 cut(s)	1073
TaaI	ACNGT	3 cut(s)	257, 462, 1180
TaiI	ACGT	3 cut(s)	475, 913, 1172
TaqI	TCGA	4 cut(s)	82, 339, 426, 956
TauI	GCSGC	1 cut(s)	1162
TfiI	GAWTC	1 cut(s)	137
Tru1I	TTAA	5 cut(s)	566, 950, 1088, 1172, 1184
Tru9I	TTAA	5 cut(s)	566, 950, 1088, 1172, 1184
TscAI	CASTG	4 cut(s)	508, 707, 1022, 1185
TseFI	GTSAC	3 cut(s)	263, 617, 1191
TseI	GCWGC	2 cut(s)	761, 1225
Tsp45I	GTSAC	3 cut(s)	263, 617, 1191
TspDTI	ATGAA	5 cut(s)	458, 782, 885, 953, 957
TspRI	CASTG	4 cut(s)	508, 707, 1022, 1185
Tth111I	GACNNNGTC	1 cut(s)	422
Vha464I	CTTAAG	1 cut(s)	949
VpaK11BI	GGWCC	2 cut(s)	800, 1071
XapI	RAATTY	1 cut(s)	572
XceI	RCATGY	2 cut(s)	746, 1234
XmiI	GTMKAC	1 cut(s)	417
XmnI	GAANNNNTTC	2 cut(s)	88, 854
Zsp2I	ATGCAT	1 cut(s)	1236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.