Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005044.1

Orthogroup ID

OG0005986

Physical Location & Seq

Genomic Coordinates Forward (+)

50400 .. 53784

Gene Structure 3385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005044.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1383 bp

atggactctcggctcaatggctctgctcgtctcatgctggtttcagatcttgattacacaatggtggatcatgatgatcctcgaaatacttctcttcttcggttcaatgcgctatgggaagcatattatcgccatgattctctgctcgtattttcaaccggaagatcacctctatcttacaaacccttgcggaatgagaagcccttgttgacgcccgatattactgtcatgtctgttggaactgagattatctacggtgagggtgacgcaatgctacccgatgatggttggcaacactatctcaatcacaattgggatagaaatattgttgtcgaggaaacaattaagtttcctcaactgactcctcaggcggaggcagagcaacgacctcacaaggttagcttttatgtagacaaggttgaggcaactgagataatgaatgttctatcagaacggttggcgaaacgtgggttagatataaagataatatatagcagtggtattgctttggatgtgttaccaaaaggtgctggcaaagggcaagctcttgcatatctgttaaagaaattcaaaattgatggcaaactgccctgcaatacaattgtttgtggtgactctggaaatgatgccgaactcttcactcttcctgaagtctatggtgtcatggttggtaatgcacaggaagaattgttacactggtatgcacacaacgcaaagagcaatcgtcgcatattgcatgcaactgagagatgtgcagctgggatcttacaagccattggtaattttcatttaggtcccaatgtatcgccaagagatatcaaagacttccaaaagtgcaaagtgaacattttcagccccgcttatgaagtggtaaagttctatctgttttatgagaaatggcgacgtgcagaggtagagaaatcagagcagtatatgcagaacttaagatcgatctttcattcattgggtgtctttgtccatccctcgggagtggagctacctctccaccagtgcatagatgcaatggcaaggttgtatggagataagcaaggaaatcaattttggacctgggtggatcaattaacctcagctcaaattggctctgacacatggctggtgaagttctacaagtgggaactgaatgagaatgagcggcaatgcacgttaactacagtgttaataaagtcacaggttgaggaaccagatactttcacttggctgcacatgcatcagacatggttggatggactcccttatggttcaacccatgtttcctccagagttccagtgcatgcaaccgatgatttggctgcggagcgctcggcaagcagtcaccagacaaaatatgaaccggggaagatggcataccactggcttctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

S6PP S6PP_C

Protein Analysis

460

Amino Acids

52.6

Weight (kDa)

6.06

Isoelectric Point (pI)

40.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54270
fragaria_vesca	FvH4_7g05160 FvH4_7g05160 FvH4_7g05160 FvH4_7g05160 FvH4_7g05160 FvH4_7g05160
malus_domestica	MD02G1260600.v1.1 MD02G1260700.v1.1
prunus_persica	Prupe.5G001900_v2.0.a1 Prupe.5G001900_v2.0.a1 Prupe.5G001900_v2.0.a1 Prupe.5G001900_v2.0.a1 Prupe.5G001900_v2.0.a1 Prupe.5G001900_v2.0.a1
pyrus_communis	pycom02g22250
rosa_chinensis	RchiOBHm_Chr1g0331691
rosa_laevigata	RLG00000029723
rosa_multiflora	Rmu_sc0005044.1_g000009
rosa_roxburghii	Rroxscaffold_4G00318910 Rroxscaffold_5G00341870
rosa_rugosa	Rorug01G0095400
rosa_samantha	Rh1AG119300 Rh1BG090800 Rh1CG114400 Rh1DG124800
rosa_wichuraiana	Rw1G009640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1153
AccI	GTMKAC	1 cut(s)	411
AciI	CCGC	5 cut(s)	190, 371, 858, 1153, 1313
AclWI	GGATC	4 cut(s)	71, 75, 770, 1083
AcsI	RAATTY	1 cut(s)	566
AcuI	CTGAAG	1 cut(s)	669
AcyI	GRCGYC	1 cut(s)	212
AfeI	AGCGCT	1 cut(s)	1319
AfiI	CCNNNNNNNGG	2 cut(s)	284, 985
AflII	CTTAAG	1 cut(s)	943
AgsI	TTSAA	4 cut(s)	106, 156, 571, 1263
AjiI	CACGTC	1 cut(s)	905
AjnI	CCWGG	1 cut(s)	1067
AjuI	GAANNNNNNNTTGG	2 cut(s)	1045, 1077
AleI	CACNNNNGTG	1 cut(s)	62
AluBI	AGCT	5 cut(s)	402, 545, 758, 997, 1091
AluI	AGCT	5 cut(s)	402, 545, 758, 997, 1091
Alw26I	GTCTC	1 cut(s)	35
AlwI	GGATC	4 cut(s)	71, 75, 770, 1083
Ama87I	CYCGRG	1 cut(s)	985
Aor51HI	AGCGCT	1 cut(s)	1319
ApeKI	GCWGC	3 cut(s)	755, 1219, 1310
ApoI	RAATTY	1 cut(s)	566
Asp700I	GAANNNNTTC	2 cut(s)	88, 848
AspLEI	GCGC	2 cut(s)	112, 1320
AspS9I	GGNCC	2 cut(s)	794, 1065
AsuC2I	CCSGG	1 cut(s)	1353
AsuHPI	GGTGA	6 cut(s)	159, 269, 275, 623, 1129, 1325
AvaI	CYCGRG	1 cut(s)	985
AvaII	GGWCC	2 cut(s)	794, 1065
AxyI	CCTNAGG	1 cut(s)	366
BarI	GAAGNNNNNNTAC	4 cut(s)	675, 707, 1349, 1381
BbvCI	CCTCAGC	1 cut(s)	1087
BbvI	GCAGC	3 cut(s)	767, 1206, 1297
BccI	CCATC	5 cut(s)	278, 572, 987, 1238, 1354
BciT130I	CCWGG	1 cut(s)	1069
BcnI	CCSGG	1 cut(s)	1353
BcoDI	GTCTC	1 cut(s)	35
BfmI	CTRYAG	1 cut(s)	1170
BfoI	RGCGCY	1 cut(s)	1321
BfrI	CTTAAG	1 cut(s)	943
BglII	AGATCT	1 cut(s)	46
BisI	GCNGC	4 cut(s)	756, 1154, 1220, 1311
BlsI	GCNGC	4 cut(s)	757, 1155, 1221, 1312
Bme1390I	CCNGG	2 cut(s)	1069, 1353
Bme18I	GGWCC	2 cut(s)	794, 1065
BmeT110I	CYCGRG	1 cut(s)	985
BmgBI	CACGTC	1 cut(s)	905
BmgT120I	GGNCC	2 cut(s)	794, 1065
BmiI	GGNNCC	2 cut(s)	796, 1200
BmrFI	CCNGG	2 cut(s)	1069, 1353
BmsI	GCATC	3 cut(s)	616, 1009, 1237
BpmI	CTGGAG	1 cut(s)	1261
Bpu10I	CCTNAGC	1 cut(s)	1087
BpuMI	CCSGG	1 cut(s)	1353
Bsa29I	ATCGAT	1 cut(s)	950
BsaHI	GRCGYC	1 cut(s)	212
BsaJI	CCNNGG	3 cut(s)	984, 1068, 1352
BsaWI	WCCGGW	1 cut(s)	158
Bsc4I	CCNNNNNNNGG	2 cut(s)	284, 985
Bse1I	ACTGG	4 cut(s)	701, 1009, 1286, 1376
Bse21I	CCTNAGG	1 cut(s)	366
Bse3DI	GCAATG	3 cut(s)	276, 1029, 1163
BseBI	CCWGG	1 cut(s)	1069
BseCI	ATCGAT	1 cut(s)	950
BseDI	CCNNGG	3 cut(s)	984, 1068, 1352
BseGI	GGATG	3 cut(s)	517, 979, 1249
BseLI	CCNNNNNNNGG	2 cut(s)	284, 985
BseMI	GCAATG	3 cut(s)	276, 1029, 1163
BseMII	CTCAG	5 cut(s)	234, 380, 420, 735, 1101
BseNI	ACTGG	4 cut(s)	701, 1009, 1286, 1376
BseRI	GAGGAG	1 cut(s)	354
BseXI	GCAGC	3 cut(s)	767, 1206, 1297
BseYI	CCCAGC	1 cut(s)	758
BsgI	GTGCAG	3 cut(s)	774, 927, 1205
BshVI	ATCGAT	1 cut(s)	950
BsiHKCI	CYCGRG	1 cut(s)	985
BsiSI	CCGG	2 cut(s)	159, 1352
BslFI	GGGAC	1 cut(s)	780
BslI	CCNNNNNNNGG	2 cut(s)	284, 985
BsmAI	GTCTC	1 cut(s)	35
BsmBI	CGTCTC	1 cut(s)	35
BsmFI	GGGAC	1 cut(s)	780
BsoBI	CYCGRG	1 cut(s)	985
Bsp143I	GATC	8 cut(s)	46, 67, 76, 164, 762, 947, 951, 1075
BspACI	CCGC	5 cut(s)	190, 371, 858, 1153, 1313
BspCNI	CTCAG	5 cut(s)	235, 379, 421, 736, 1100
BspDI	ATCGAT	1 cut(s)	950
BspHI	TCATGA	1 cut(s)	70
BspLI	GGNNCC	2 cut(s)	796, 1200
BspPI	GGATC	4 cut(s)	71, 75, 770, 1083
BspTI	CTTAAG	1 cut(s)	943
BsrBI	CCGCTC	1 cut(s)	1153
BsrDI	GCAATG	3 cut(s)	276, 1029, 1163
BsrI	ACTGG	4 cut(s)	701, 1009, 1286, 1376
BssECI	CCNNGG	3 cut(s)	984, 1068, 1352
BssMI	GATC	8 cut(s)	46, 67, 76, 164, 762, 947, 951, 1075
BssNI	GRCGYC	1 cut(s)	212
Bst2UI	CCWGG	1 cut(s)	1069
Bst4CI	ACNGT	4 cut(s)	226, 257, 456, 1174
Bst6I	CTCTTC	3 cut(s)	99, 641, 648
BstACI	GRCGYC	1 cut(s)	212
BstAFI	CTTAAG	1 cut(s)	943
BstAPI	GCANNNNNTGC	1 cut(s)	934
BstC8I	GCNNGC	5 cut(s)	532, 543, 738, 1293, 1327
BstDEI	CTNAG	5 cut(s)	243, 366, 429, 744, 1087
BstF5I	GGATG	3 cut(s)	517, 979, 1249
BstH2I	RGCGCY	1 cut(s)	1321
BstHHI	GCGC	2 cut(s)	112, 1320
BstKTI	GATC	8 cut(s)	49, 70, 79, 167, 765, 950, 954, 1078
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	8 cut(s)	46, 67, 76, 164, 762, 947, 951, 1075
BstMWI	GCNNNNNNNGC	5 cut(s)	710, 726, 934, 1225, 1326
BstNI	CCWGG	1 cut(s)	1069
BstNSI	RCATGY	3 cut(s)	740, 1228, 1295
BstSCI	CCNGG	2 cut(s)	1067, 1351
BstSFI	CTRYAG	1 cut(s)	1170
BstV1I	GCAGC	3 cut(s)	767, 1206, 1297
BstX2I	RGATCY	2 cut(s)	46, 762
BstYI	RGATCY	2 cut(s)	46, 762
Bsu15I	ATCGAT	1 cut(s)	950
Bsu36I	CCTNAGG	1 cut(s)	366
BsuTUI	ATCGAT	1 cut(s)	950
BtrI	CACGTC	1 cut(s)	905
BtsCI	GGATG	3 cut(s)	517, 979, 1249
BtsI	GCAGTG	1 cut(s)	502
BtsIMutI	CAGTG	6 cut(s)	502, 694, 1016, 1179, 1293, 1369
Cac8I	GCNNGC	5 cut(s)	532, 543, 738, 1293, 1327
CciI	TCATGA	1 cut(s)	70
CfoI	GCGC	2 cut(s)	112, 1320
Cfr13I	GGNCC	2 cut(s)	794, 1065
ClaI	ATCGAT	1 cut(s)	950
CseI	GACGC	2 cut(s)	220, 275
DdeI	CTNAG	5 cut(s)	243, 366, 429, 744, 1087
DpnI	GATC	8 cut(s)	48, 69, 78, 166, 764, 949, 953, 1077
DpnII	GATC	8 cut(s)	46, 67, 76, 164, 762, 947, 951, 1075
Eam1104I	CTCTTC	3 cut(s)	99, 641, 648
EarI	CTCTTC	3 cut(s)	99, 641, 648
EciI	GGCGGA	1 cut(s)	386
Eco32I	GATATC	1 cut(s)	817
Eco47I	GGWCC	2 cut(s)	794, 1065
Eco47III	AGCGCT	1 cut(s)	1319
Eco57I	CTGAAG	1 cut(s)	669
Eco81I	CCTNAGG	1 cut(s)	366
Eco88I	CYCGRG	1 cut(s)	985
EcoO109I	RGGNCCY	1 cut(s)	794
EcoRII	CCWGG	1 cut(s)	1067
EcoRV	GATATC	1 cut(s)	817
EcoT22I	ATGCAT	1 cut(s)	1230
Esp3I	CGTCTC	1 cut(s)	35
FalI	AAGNNNNNCTT	2 cut(s)	386, 418
FaqI	GGGAC	1 cut(s)	780
FauI	CCCGC	1 cut(s)	865
FblI	GTMKAC	1 cut(s)	411
Fnu4HI	GCNGC	4 cut(s)	756, 1154, 1220, 1311
FokI	GGATG	3 cut(s)	524, 966, 1256
Fsp4HI	GCNGC	4 cut(s)	756, 1154, 1220, 1311
GlaI	GCGC	2 cut(s)	111, 1319
GluI	GCNGC	4 cut(s)	756, 1154, 1220, 1311
GsaI	CCCAGC	1 cut(s)	762
GsuI	CTGGAG	1 cut(s)	1261
HaeII	RGCGCY	1 cut(s)	1321
HapII	CCGG	2 cut(s)	159, 1352
HgaI	GACGC	2 cut(s)	220, 275
HhaI	GCGC	2 cut(s)	112, 1320
Hin1I	GRCGYC	1 cut(s)	212
Hin6I	GCGC	2 cut(s)	110, 1318
HinP1I	GCGC	2 cut(s)	110, 1318
HincII	GTYRAC	2 cut(s)	210, 1167
HindII	GTYRAC	2 cut(s)	210, 1167
HinfI	GANTC	5 cut(s)	5, 137, 361, 614, 1248
HpaI	GTTAAC	1 cut(s)	1167
HpaII	CCGG	2 cut(s)	159, 1352
HphI	GGTGA	6 cut(s)	159, 269, 275, 623, 1129, 1325
Hpy166II	GTNNAC	4 cut(s)	210, 412, 844, 1167
Hpy188I	TCNGA	5 cut(s)	46, 451, 925, 1105, 1233
Hpy188III	TCNNGA	6 cut(s)	50, 71, 618, 647, 987, 1278
Hpy8I	GTNNAC	4 cut(s)	210, 412, 844, 1167
Hpy99I	CGWCG	2 cut(s)	729, 906
HpyCH4III	ACNGT	4 cut(s)	226, 257, 456, 1174
HpyCH4IV	ACGT	3 cut(s)	466, 904, 1163
HpyF10VI	GCNNNNNNNGC	5 cut(s)	710, 726, 934, 1225, 1326
HpyF3I	CTNAG	5 cut(s)	243, 366, 429, 744, 1087
HpySE526I	ACGT	3 cut(s)	466, 904, 1163
Hsp92I	GRCGYC	1 cut(s)	212
HspAI	GCGC	2 cut(s)	110, 1318
KspAI	GTTAAC	1 cut(s)	1167
Kzo9I	GATC	8 cut(s)	46, 67, 76, 164, 762, 947, 951, 1075
LmnI	GCTCC	2 cut(s)	994, 1315
Lsp1109I	GCAGC	3 cut(s)	767, 1206, 1297
LweI	GCATC	3 cut(s)	616, 1009, 1237
MaeII	ACGT	3 cut(s)	466, 904, 1163
MaeIII	GTNAC	6 cut(s)	263, 516, 611, 690, 1185, 1331
MalI	GATC	8 cut(s)	48, 69, 78, 166, 764, 949, 953, 1077
MbiI	CCGCTC	1 cut(s)	1153
MboI	GATC	8 cut(s)	46, 67, 76, 164, 762, 947, 951, 1075
MboII	GAAGA	7 cut(s)	86, 89, 174, 628, 635, 695, 1369
MfeI	CAATTG	2 cut(s)	310, 600
MflI	RGATCY	2 cut(s)	46, 762
MlyI	GAGTC	3 cut(s)	355, 608, 1242
MmeI	TCCRAC	2 cut(s)	217, 1221
Mph1103I	ATGCAT	1 cut(s)	1230
MroXI	GAANNNNTTC	2 cut(s)	88, 848
MseI	TTAA	6 cut(s)	345, 560, 944, 1082, 1166, 1178
MslI	CAYNNNNRTG	2 cut(s)	62, 699
MspA1I	CMGCKG	1 cut(s)	758
MspCI	CTTAAG	1 cut(s)	943
MspI	CCGG	2 cut(s)	159, 1352
MspR9I	CCNGG	2 cut(s)	1069, 1353
MunI	CAATTG	2 cut(s)	310, 600
MvaI	CCWGG	1 cut(s)	1069
MwoI	GCNNNNNNNGC	5 cut(s)	710, 726, 934, 1225, 1326
NciI	CCSGG	1 cut(s)	1353
NdeII	GATC	8 cut(s)	46, 67, 76, 164, 762, 947, 951, 1075
NlaIV	GGNNCC	2 cut(s)	796, 1200
NmeAIII	GCCGAG	1 cut(s)	1301
NmuCI	GTSAC	4 cut(s)	263, 611, 1185, 1331
NsiI	ATGCAT	1 cut(s)	1230
NspI	RCATGY	3 cut(s)	740, 1228, 1295
OliI	CACNNNNGTG	1 cut(s)	62
PaeI	GCATGC	2 cut(s)	740, 1295
PagI	TCATGA	1 cut(s)	70
PdmI	GAANNNNTTC	2 cut(s)	88, 848
PfeI	GAWTC	1 cut(s)	137
PkrI	GCNGC	4 cut(s)	757, 1155, 1221, 1312
PleI	GAGTC	3 cut(s)	355, 608, 1242
PpsI	GAGTC	3 cut(s)	355, 608, 1242
PpuMI	RGGWCCY	1 cut(s)	794
Psp5II	RGGWCCY	1 cut(s)	794
Psp6I	CCWGG	1 cut(s)	1067
PspFI	CCCAGC	1 cut(s)	758
PspGI	CCWGG	1 cut(s)	1067
PspN4I	GGNNCC	2 cut(s)	796, 1200
PspPI	GGNCC	2 cut(s)	794, 1065
PspPPI	RGGWCCY	1 cut(s)	794
PsuI	RGATCY	2 cut(s)	46, 762
PvuII	CAGCTG	1 cut(s)	758
RseI	CAYNNNNRTG	2 cut(s)	62, 699
SaqAI	TTAA	6 cut(s)	345, 560, 944, 1082, 1166, 1178
SatI	GCNGC	4 cut(s)	756, 1154, 1220, 1311
Sau3AI	GATC	8 cut(s)	46, 67, 76, 164, 762, 947, 951, 1075
Sau96I	GGNCC	2 cut(s)	794, 1065
SchI	GAGTC	3 cut(s)	355, 608, 1242
ScrFI	CCNGG	2 cut(s)	1069, 1353
SfaNI	GCATC	3 cut(s)	616, 1009, 1237
SfcI	CTRYAG	1 cut(s)	1170
SinI	GGWCC	2 cut(s)	794, 1065
SmiMI	CAYNNNNRTG	2 cut(s)	62, 699
SmlI	CTYRAG	1 cut(s)	943
SmoI	CTYRAG	1 cut(s)	943
SphI	GCATGC	2 cut(s)	740, 1295
SsiI	CCGC	5 cut(s)	190, 371, 858, 1153, 1313
SspI	AATATT	1 cut(s)	325
StyD4I	CCNGG	2 cut(s)	1067, 1351
TaaI	ACNGT	4 cut(s)	226, 257, 456, 1174
TaiI	ACGT	3 cut(s)	469, 907, 1166
TaqI	TCGA	3 cut(s)	82, 333, 950
TauI	GCSGC	1 cut(s)	1156
TfiI	GAWTC	1 cut(s)	137
Tru1I	TTAA	6 cut(s)	345, 560, 944, 1082, 1166, 1178
Tru9I	TTAA	6 cut(s)	345, 560, 944, 1082, 1166, 1178
TscAI	CASTG	6 cut(s)	502, 701, 1016, 1179, 1293, 1376
TseFI	GTSAC	4 cut(s)	263, 611, 1185, 1331
TseI	GCWGC	3 cut(s)	755, 1219, 1310
Tsp45I	GTSAC	4 cut(s)	263, 611, 1185, 1331
TspDTI	ATGAA	6 cut(s)	452, 776, 879, 947, 951, 1362
TspRI	CASTG	6 cut(s)	502, 701, 1016, 1179, 1293, 1376
Vha464I	CTTAAG	1 cut(s)	943
VpaK11BI	GGWCC	2 cut(s)	794, 1065
XapI	RAATTY	1 cut(s)	566
XceI	RCATGY	3 cut(s)	740, 1228, 1295
XmiI	GTMKAC	1 cut(s)	411
XmnI	GAANNNNTTC	2 cut(s)	88, 848
Zsp2I	ATGCAT	1 cut(s)	1230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.