Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0005986

Physical Location & Seq

Genomic Coordinates Forward (+)

5534750 .. 5538591

Gene Structure 3842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g05160.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGACTCTCGGTTGAATGGCTCTGCTCGTCTCATGCTGGTTTCGGATCTTGATTACACAATGGTAGATCATGATGATCCTCGAAATACTTCTCTTCTCCGGTTTAATGCTCTATGGGAATCATTTTATCGCCACGATTCTCTGCTCGTATATTCAACCGGAAGATCACCTGTATCTTACAAACCCTTGTGGAATGTGAAGCCCTTGTTGACGCCCGATATTACTATCATGTCTGTCGGAACTGAGATTGTCTGTGGTGAGCTTCCCGATGATGGTTGGCAACTGCATCTCAATCATAATTGGGATAGAAACATTGTTGTTGAGGAAACACTCAAGTTTCCTCAGCTTACTCCTCAGGCAGAGGCGGAGCAACGACCTCACAAGGTTAGCTTTTATGTAGACAAGGTTGAGGCAACTGAGATAATGAATGTTCTATCACAACGGTTAGCGAAACGTGGGTTAGATGTAAAGATAATATATAGCAGTGGGATTGCTTTGGACGTGCTACCAAAGGGTGCTGGCAAAGGGCAAGCTCTTGCATATCTGTTAAACAAGTTCAAAATTAATGGAAAACTGCCCTGCAATACACTTGTTTGTGGTGATTCTGGAAATGATGTCGAACTCTTCAGTCTTCCTGAAGTCAATGGTGTCATGGTCGGTAATGCACAGGAAGAATTGTTACACTGGTATACACAAAATGCCAAGACCAATCGTCGCATACTGCATGCAACCGAGAGATGTGCGGCTGGGATCTTACAAGCCATTGGTTATTTTCATTTAGGTCCAAACATATCTCCAAGAGATATCAAAGACTTCCAAAAGTGCGAAGTAAACATTTTTAGCCCTGCTTATGAAGTGGTAAAGTTCTATCTTTTTTATGAGAAATGGCGACGTGCGGACGTAGAGAAATCGGAGCAGTATATGCAGAACTTAAGATCTATCTTTCATTCATTGGGTGTCTTTGTCCATCCCTTGGGAGTGGAGCTGCCTCTCCACCAGTGCATAGATGCAATGTCCAGGTTGTATGGAGATAAGCAAGGAAATCAATTTTGGACCTGGGTGGATCGGTTATCCTCGGCTCAAATTGGCTCGGACACATGGCTTGTGAAGTTCTACAAGTGGGAACTGAATGAGAATGAGCGGCAATGCACCTTAACTACAGTCTTAATAAAGTCACAGGTTGAGGTGCCAGATACTTTCACTTGGCTGCATATGCATCAGACATGGTTGGATTGTTTTGGAAATGAACATGCAGAAAGATGGTTGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

S6PP S6PP_C

Protein Analysis

424

Amino Acids

48.72

Weight (kDa)

5.97

Isoelectric Point (pI)

39.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S6PP	PF05116	10 - 259	3.3e-93	Sucrose-6F-phosphate phosphohydrolase
Hydrolase_3	PF08282	119 - 229	2.5e-12	haloacid dehalogenase-like hydrolase
S6PP_C	PF08472	282 - 410	1.7e-57	Sucrose-6-phosphate phosphohydrolase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54270
fragaria_vesca	FvH4_7g05160 FvH4_7g05160 FvH4_7g05160 FvH4_7g05160 FvH4_7g05160 FvH4_7g05160
malus_domestica	MD02G1260600.v1.1 MD02G1260700.v1.1
prunus_persica	Prupe.5G001900_v2.0.a1 Prupe.5G001900_v2.0.a1 Prupe.5G001900_v2.0.a1 Prupe.5G001900_v2.0.a1 Prupe.5G001900_v2.0.a1 Prupe.5G001900_v2.0.a1
pyrus_communis	pycom02g22250
rosa_chinensis	RchiOBHm_Chr1g0331691
rosa_laevigata	RLG00000029723
rosa_multiflora	Rmu_sc0005044.1_g000009
rosa_roxburghii	Rroxscaffold_4G00318910 Rroxscaffold_5G00341870
rosa_rugosa	Rorug01G0095400
rosa_samantha	Rh1AG119300 Rh1BG090800 Rh1CG114400 Rh1DG124800
rosa_wichuraiana	Rw1G009640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1186
AccB7I	CCANNNNNTGG	1 cut(s)	973
AccBSI	CCGCTC	1 cut(s)	1141
AccI	GTMKAC	2 cut(s)	399, 689
AciI	CCGC	4 cut(s)	365, 743, 896, 1141
AclWI	GGATC	4 cut(s)	54, 71, 758, 1071
AcuI	CTGAAG	2 cut(s)	610, 657
AcyI	GRCGYC	1 cut(s)	212
AfiI	CCNNNNNNNGG	2 cut(s)	272, 973
AflII	CTTAAG	1 cut(s)	931
AgsI	TTSAA	3 cut(s)	16, 156, 559
AhdI	GACNNNNNGTC	1 cut(s)	711
AjiI	CACGTC	2 cut(s)	502, 893
AjnI	CCWGG	2 cut(s)	1016, 1055
AjuI	GAANNNNNNNTTGG	2 cut(s)	1033, 1065
AluBI	AGCT	5 cut(s)	262, 346, 390, 533, 985
AluI	AGCT	5 cut(s)	262, 346, 390, 533, 985
Alw26I	GTCTC	1 cut(s)	35
AlwI	GGATC	4 cut(s)	54, 71, 758, 1071
ApeKI	GCWGC	2 cut(s)	985, 1207
AseI	ATTAAT	1 cut(s)	564
Asp700I	GAANNNNTTC	1 cut(s)	88
AspS9I	GGNCC	2 cut(s)	782, 1053
AsuHPI	GGTGA	3 cut(s)	159, 269, 611
AvaII	GGWCC	2 cut(s)	782, 1053
AxyI	CCTNAGG	1 cut(s)	354
BanI	GGYRCC	1 cut(s)	1186
BarI	GAAGNNNNNNTAC	2 cut(s)	663, 695
BbsI	GAAGAC	1 cut(s)	623
BbvCI	CCTCAGC	1 cut(s)	342
BbvI	GCAGC	2 cut(s)	972, 1194
BccI	CCATC	3 cut(s)	266, 975, 1254
BcgI	CGANNNNNNTGC	2 cut(s)	722, 756
BciT130I	CCWGG	2 cut(s)	1018, 1057
BcoDI	GTCTC	1 cut(s)	35
BfmI	CTRYAG	1 cut(s)	1158
BfrI	CTTAAG	1 cut(s)	931
BglII	AGATCT	1 cut(s)	935
BisI	GCNGC	4 cut(s)	744, 986, 1142, 1208
BlsI	GCNGC	4 cut(s)	745, 987, 1143, 1209
Bme1390I	CCNGG	2 cut(s)	1018, 1057
Bme18I	GGWCC	2 cut(s)	782, 1053
BmeRI	GACNNNNNGTC	1 cut(s)	711
BmgBI	CACGTC	2 cut(s)	502, 893
BmgT120I	GGNCC	2 cut(s)	782, 1053
BmiI	GGNNCC	1 cut(s)	1188
BmrFI	CCNGG	2 cut(s)	1018, 1057
BmsI	GCATC	3 cut(s)	295, 997, 1225
BpiI	GAAGAC	1 cut(s)	623
Bpu10I	CCTNAGC	1 cut(s)	342
BpuEI	CTTGAG	1 cut(s)	317
BsaHI	GRCGYC	1 cut(s)	212
BsaJI	CCNNGG	3 cut(s)	972, 1056, 1074
BsaWI	WCCGGW	2 cut(s)	99, 158
Bsc4I	CCNNNNNNNGG	2 cut(s)	272, 973
Bse1I	ACTGG	2 cut(s)	689, 997
Bse21I	CCTNAGG	1 cut(s)	354
Bse3DI	GCAATG	2 cut(s)	1017, 1151
BseBI	CCWGG	2 cut(s)	1018, 1057
BseDI	CCNNGG	3 cut(s)	972, 1056, 1074
BseGI	GGATG	1 cut(s)	967
BseLI	CCNNNNNNNGG	2 cut(s)	272, 973
BseMI	GCAATG	2 cut(s)	1017, 1151
BseMII	CTCAG	4 cut(s)	234, 356, 368, 408
BseNI	ACTGG	2 cut(s)	689, 997
BseRI	GAGGAG	1 cut(s)	342
BseXI	GCAGC	2 cut(s)	972, 1194
BseYI	CCCAGC	1 cut(s)	746
BshNI	GGYRCC	1 cut(s)	1186
BsiSI	CCGG	2 cut(s)	100, 159
BslI	CCNNNNNNNGG	2 cut(s)	272, 973
BsmAI	GTCTC	1 cut(s)	35
BsmBI	CGTCTC	1 cut(s)	35
Bsp143I	GATC	7 cut(s)	46, 67, 76, 164, 750, 935, 1063
BspACI	CCGC	4 cut(s)	365, 743, 896, 1141
BspCNI	CTCAG	4 cut(s)	235, 355, 367, 409
BspHI	TCATGA	1 cut(s)	70
BspLI	GGNNCC	1 cut(s)	1188
BspPI	GGATC	4 cut(s)	54, 71, 758, 1071
BspT107I	GGYRCC	1 cut(s)	1186
BspTI	CTTAAG	1 cut(s)	931
BsrBI	CCGCTC	1 cut(s)	1141
BsrDI	GCAATG	2 cut(s)	1017, 1151
BsrI	ACTGG	2 cut(s)	689, 997
BssECI	CCNNGG	3 cut(s)	972, 1056, 1074
BssMI	GATC	7 cut(s)	46, 67, 76, 164, 750, 935, 1063
BssNAI	GTATAC	1 cut(s)	690
BssNI	GRCGYC	1 cut(s)	212
BssT1I	CCWWGG	1 cut(s)	972
Bst1107I	GTATAC	1 cut(s)	690
Bst2UI	CCWGG	2 cut(s)	1018, 1057
Bst4CI	ACNGT	2 cut(s)	444, 1162
Bst6I	CTCTTC	2 cut(s)	99, 629
BstACI	GRCGYC	1 cut(s)	212
BstAFI	CTTAAG	1 cut(s)	931
BstAPI	GCANNNNNTGC	1 cut(s)	922
BstC8I	GCNNGC	3 cut(s)	520, 531, 726
BstDEI	CTNAG	4 cut(s)	243, 342, 354, 417
BstF5I	GGATG	1 cut(s)	967
BstKTI	GATC	7 cut(s)	49, 70, 79, 167, 753, 938, 1066
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	7 cut(s)	46, 67, 76, 164, 750, 935, 1063
BstMWI	GCNNNNNNNGC	2 cut(s)	922, 1213
BstNI	CCWGG	2 cut(s)	1018, 1057
BstNSI	RCATGY	2 cut(s)	728, 1253
BstSCI	CCNGG	2 cut(s)	1016, 1055
BstSFI	CTRYAG	1 cut(s)	1158
BstV1I	GCAGC	2 cut(s)	972, 1194
BstV2I	GAAGAC	1 cut(s)	623
BstX2I	RGATCY	3 cut(s)	46, 750, 935
BstYI	RGATCY	3 cut(s)	46, 750, 935
BstZ17I	GTATAC	1 cut(s)	690
Bsu36I	CCTNAGG	1 cut(s)	354
BtrI	CACGTC	2 cut(s)	502, 893
BtsCI	GGATG	1 cut(s)	967
BtsI	GCAGTG	1 cut(s)	490
BtsIMutI	CAGTG	3 cut(s)	490, 682, 1004
Cac8I	GCNNGC	3 cut(s)	520, 531, 726
CciI	TCATGA	1 cut(s)	70
Cfr13I	GGNCC	2 cut(s)	782, 1053
CseI	GACGC	1 cut(s)	220
CviAII	CATG	8 cut(s)	34, 71, 229, 652, 725, 1098, 1224, 1250
DdeI	CTNAG	4 cut(s)	243, 342, 354, 417
DpnI	GATC	7 cut(s)	48, 69, 78, 166, 752, 937, 1065
DpnII	GATC	7 cut(s)	46, 67, 76, 164, 750, 935, 1063
DriI	GACNNNNNGTC	1 cut(s)	711
Eam1104I	CTCTTC	2 cut(s)	99, 629
Eam1105I	GACNNNNNGTC	1 cut(s)	711
EarI	CTCTTC	2 cut(s)	99, 629
EciI	GGCGGA	1 cut(s)	380
Eco130I	CCWWGG	1 cut(s)	972
Eco32I	GATATC	1 cut(s)	805
Eco47I	GGWCC	2 cut(s)	782, 1053
Eco57I	CTGAAG	2 cut(s)	610, 657
Eco81I	CCTNAGG	1 cut(s)	354
EcoRII	CCWGG	2 cut(s)	1016, 1055
EcoRV	GATATC	1 cut(s)	805
EcoT14I	CCWWGG	1 cut(s)	972
EcoT22I	ATGCAT	1 cut(s)	1218
ErhI	CCWWGG	1 cut(s)	972
Esp3I	CGTCTC	1 cut(s)	35
FaeI	CATG	8 cut(s)	37, 74, 232, 655, 728, 1101, 1227, 1253
FalI	AAGNNNNNCTT	2 cut(s)	374, 406
FatI	CATG	8 cut(s)	33, 70, 228, 651, 724, 1097, 1223, 1249
FauNDI	CATATG	1 cut(s)	1212
FblI	GTMKAC	2 cut(s)	399, 689
Fnu4HI	GCNGC	4 cut(s)	744, 986, 1142, 1208
FokI	GGATG	1 cut(s)	954
Fsp4HI	GCNGC	4 cut(s)	744, 986, 1142, 1208
GluI	GCNGC	4 cut(s)	744, 986, 1142, 1208
GsaI	CCCAGC	1 cut(s)	750
HapII	CCGG	2 cut(s)	100, 159
HgaI	GACGC	1 cut(s)	220
Hin1I	GRCGYC	1 cut(s)	212
Hin1II	CATG	8 cut(s)	37, 74, 232, 655, 728, 1101, 1227, 1253
HincII	GTYRAC	1 cut(s)	210
HindII	GTYRAC	1 cut(s)	210
HinfI	GANTC	4 cut(s)	5, 119, 137, 602
HpaII	CCGG	2 cut(s)	100, 159
HphI	GGTGA	3 cut(s)	159, 269, 611
Hpy166II	GTNNAC	4 cut(s)	210, 400, 690, 832
Hpy188I	TCNGA	5 cut(s)	46, 239, 913, 1093, 1221
Hpy188III	TCNNGA	5 cut(s)	50, 71, 266, 606, 635
Hpy8I	GTNNAC	4 cut(s)	210, 400, 690, 832
Hpy99I	CGWCG	2 cut(s)	717, 894
HpyCH4III	ACNGT	2 cut(s)	444, 1162
HpyCH4IV	ACGT	4 cut(s)	454, 501, 892, 900
HpyF10VI	GCNNNNNNNGC	2 cut(s)	922, 1213
HpyF3I	CTNAG	4 cut(s)	243, 342, 354, 417
HpySE526I	ACGT	4 cut(s)	454, 501, 892, 900
Hsp92I	GRCGYC	1 cut(s)	212
Hsp92II	CATG	8 cut(s)	37, 74, 232, 655, 728, 1101, 1227, 1253
Kzo9I	GATC	7 cut(s)	46, 67, 76, 164, 750, 935, 1063
LmnI	GCTCC	3 cut(s)	367, 913, 982
Lsp1109I	GCAGC	2 cut(s)	972, 1194
LweI	GCATC	3 cut(s)	295, 997, 1225
MaeII	ACGT	4 cut(s)	454, 501, 892, 900
MaeIII	GTNAC	2 cut(s)	678, 1173
MalI	GATC	7 cut(s)	48, 69, 78, 166, 752, 937, 1065
MbiI	CCGCTC	1 cut(s)	1141
MboI	GATC	7 cut(s)	46, 67, 76, 164, 750, 935, 1063
MboII	GAAGA	5 cut(s)	86, 174, 616, 623, 683
MflI	RGATCY	3 cut(s)	46, 750, 935
MluCI	AATT	5 cut(s)	298, 561, 674, 1046, 1083
MmeI	TCCRAC	2 cut(s)	217, 1209
Mph1103I	ATGCAT	1 cut(s)	1218
MroXI	GAANNNNTTC	1 cut(s)	88
MseI	TTAA	6 cut(s)	105, 548, 564, 932, 1154, 1166
MspCI	CTTAAG	1 cut(s)	931
MspI	CCGG	2 cut(s)	100, 159
MspR9I	CCNGG	2 cut(s)	1018, 1057
MvaI	CCWGG	2 cut(s)	1018, 1057
MwoI	GCNNNNNNNGC	2 cut(s)	922, 1213
NdeI	CATATG	1 cut(s)	1212
NdeII	GATC	7 cut(s)	46, 67, 76, 164, 750, 935, 1063
NlaIII	CATG	8 cut(s)	37, 74, 232, 655, 728, 1101, 1227, 1253
NlaIV	GGNNCC	1 cut(s)	1188
NmeAIII	GCCGAG	1 cut(s)	1055
NmuCI	GTSAC	1 cut(s)	1173
NsiI	ATGCAT	1 cut(s)	1218
NspI	RCATGY	2 cut(s)	728, 1253
PaeI	GCATGC	1 cut(s)	728
PagI	TCATGA	1 cut(s)	70
PdmI	GAANNNNTTC	1 cut(s)	88
PfeI	GAWTC	3 cut(s)	119, 137, 602
PflMI	CCANNNNNTGG	1 cut(s)	973
PkrI	GCNGC	4 cut(s)	745, 987, 1143, 1209
PshBI	ATTAAT	1 cut(s)	564
Psp6I	CCWGG	2 cut(s)	1016, 1055
PspFI	CCCAGC	1 cut(s)	746
PspGI	CCWGG	2 cut(s)	1016, 1055
PspN4I	GGNNCC	1 cut(s)	1188
PspPI	GGNCC	2 cut(s)	782, 1053
PsuI	RGATCY	3 cut(s)	46, 750, 935
SaqAI	TTAA	6 cut(s)	105, 548, 564, 932, 1154, 1166
SatI	GCNGC	4 cut(s)	744, 986, 1142, 1208
Sau3AI	GATC	7 cut(s)	46, 67, 76, 164, 750, 935, 1063
Sau96I	GGNCC	2 cut(s)	782, 1053
ScrFI	CCNGG	2 cut(s)	1018, 1057
SfaNI	GCATC	3 cut(s)	295, 997, 1225
SfcI	CTRYAG	1 cut(s)	1158
SinI	GGWCC	2 cut(s)	782, 1053
SmlI	CTYRAG	2 cut(s)	332, 931
SmoI	CTYRAG	2 cut(s)	332, 931
SphI	GCATGC	1 cut(s)	728
Sse9I	AATT	5 cut(s)	298, 561, 674, 1046, 1083
SsiI	CCGC	4 cut(s)	365, 743, 896, 1141
StyD4I	CCNGG	2 cut(s)	1016, 1055
StyI	CCWWGG	1 cut(s)	972
TaaI	ACNGT	2 cut(s)	444, 1162
TaiI	ACGT	4 cut(s)	457, 504, 895, 903
TaqI	TCGA	2 cut(s)	82, 618
TasI	AATT	5 cut(s)	298, 561, 674, 1046, 1083
TauI	GCSGC	2 cut(s)	746, 1144
TfiI	GAWTC	3 cut(s)	119, 137, 602
Tru1I	TTAA	6 cut(s)	105, 548, 564, 932, 1154, 1166
Tru9I	TTAA	6 cut(s)	105, 548, 564, 932, 1154, 1166
TscAI	CASTG	3 cut(s)	490, 689, 1004
TseFI	GTSAC	1 cut(s)	1173
TseI	GCWGC	2 cut(s)	985, 1207
Tsp45I	GTSAC	1 cut(s)	1173
TspDTI	ATGAA	6 cut(s)	440, 764, 867, 935, 939, 1260
TspRI	CASTG	3 cut(s)	490, 689, 1004
Van91I	CCANNNNNTGG	1 cut(s)	973
Vha464I	CTTAAG	1 cut(s)	931
VpaK11BI	GGWCC	2 cut(s)	782, 1053
VspI	ATTAAT	1 cut(s)	564
XceI	RCATGY	2 cut(s)	728, 1253
XmiI	GTMKAC	2 cut(s)	399, 689
XmnI	GAANNNNTTC	1 cut(s)	88
Zsp2I	ATGCAT	1 cut(s)	1218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.