Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0005986

Physical Location & Seq

Genomic Coordinates Reverse (-)

31428838 .. 31434994

Gene Structure 6157 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1260700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGATGAACATGAATCGTCGTCTGAATGGTTCTGCTCGTCTGATGCTGGTCTCAGATCTTGATTGCACCATGGTTGACCATGATGCGCCTGATAATCTGAGTCTTCTCAGGTTCAATGCGCTGTGGGAATCATATTACCGCCATGATTCTCTGCTCGTATATTCCACTGGAAGAACACCCATCACGTACAAACCTTTGAGGAATCAGAAACCCTTGCTAACCCCCGACATCACCATTTTGTCCGTCGGCACTGAGATTATGTATGGCGGTGGTGACGATATGGTTCCTGATCTTGGTTGGCAACAGTTTATCAGTCACAGATGGGATAGAGCCATTGTTGTTGAAGAAACTAATCAATTTCCTCAACTTATTCCTCAGGCAGAGAAAAACCAACGACCTCACAAGGTTAGCTTTAAGGTTGACAAGGTAATGGCATTGGAAATAATGAATGCTTTATCAGAACGGTTGGAGAAACGTGGGGTAGACATAAACATCATTTATAGCAGGGGGGTTGATTTGGACATTTTACCCAAACGTGCCGATAAAGGACAAGCTCTTGCGTATCTGTTAAAGAAATTCAACAATGAGGAGAAACTTCCGCACGACACTCTTGTTTGTGGCGACTCTGGAAACGATGCTGAACTCTTCAGTCTCCCTCAAGTGTATGGTGTGATGGTGAGTAATGCACAAGAAGATTTGTTGCAGTGGTATGCAGAAAATGTGAGTGACAATCCTGATATGCTTCATGCAACTGAGAGATGTGCAGCTGGGATAATACAAGCCATTGGACATTTTCATCTAGGTCCAAATGTATCGCCTAGAGATTTAAAAGACTTCCGAAAGTGCAAAGTGGAAATGTCCAGTCCTGCTCATGAGGTAACCAAATTCTATTTGTTCTATGAGAGATGGCGCCGTGCTGAAGTAGAGAAATCTGAGGAGTACATGCAAAACTTAAAATCAGTCCTTGGTGGACTACTGCAGTCATCGGGTATCTTTGTCCATCCCTCCGGAGTTGATCTACCAATCCACCAGTGCATAGATTCATTGGCAAGGTTGCATGGAGATAAGCAGGGAAAACAATTTTGGACATGGTTGGATCGATTATCCTCAGTTCAAATTGGCTCAAATGCATGGCTCGTGAAGTTTAATAAGTGGGAATTGTGTGAACGAGCGGCGATGTTGTCTAACTACAGTCTTGATGAGTTCGAAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016740 GO:0016757

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

S6PP S6PP_C

Protein Analysis

405

Amino Acids

46.19

Weight (kDa)

5.77

Isoelectric Point (pI)

38.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S6PP	PF05116	13 - 266	7.2e-93	Sucrose-6F-phosphate phosphohydrolase
Hydrolase_3	PF08282	124 - 235	6.9e-11	haloacid dehalogenase-like hydrolase
S6PP_C	PF08472	289 - 390	5.3e-41	Sucrose-6-phosphate phosphohydrolase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54270
fragaria_vesca	FvH4_7g05160 FvH4_7g05160 FvH4_7g05160 FvH4_7g05160 FvH4_7g05160 FvH4_7g05160
malus_domestica	MD02G1260600.v1.1 MD02G1260700.v1.1
prunus_persica	Prupe.5G001900_v2.0.a1 Prupe.5G001900_v2.0.a1 Prupe.5G001900_v2.0.a1 Prupe.5G001900_v2.0.a1 Prupe.5G001900_v2.0.a1 Prupe.5G001900_v2.0.a1
pyrus_communis	pycom02g22250
rosa_chinensis	RchiOBHm_Chr1g0331691
rosa_laevigata	RLG00000029723
rosa_multiflora	Rmu_sc0005044.1_g000009
rosa_roxburghii	Rroxscaffold_4G00318910 Rroxscaffold_5G00341870
rosa_rugosa	Rorug01G0095400
rosa_samantha	Rh1AG119300 Rh1BG090800 Rh1CG114400 Rh1DG124800
rosa_wichuraiana	Rw1G009640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	909
AccBSI	CCGCTC	1 cut(s)	1172
AccI	GTMKAC	1 cut(s)	483
AccIII	TCCGGA	1 cut(s)	1007
AciI	CCGC	4 cut(s)	139, 267, 599, 1172
AclWI	GGATC	1 cut(s)	1104
AcsI	RAATTY	2 cut(s)	575, 884
AcuI	CTGAAG	2 cut(s)	631, 939
AcyI	GRCGYC	1 cut(s)	910
AfaI	GTAC	2 cut(s)	188, 941
AfiI	CCNNNNNNNGG	1 cut(s)	293
AgsI	TTSAA	4 cut(s)	115, 344, 580, 1115
AjuI	GAANNNNNNNTTGG	2 cut(s)	1066, 1098
AluBI	AGCT	3 cut(s)	411, 554, 767
AluI	AGCT	3 cut(s)	411, 554, 767
Alw26I	GTCTC	2 cut(s)	55, 656
AlwI	GGATC	1 cut(s)	1104
Aor13HI	TCCGGA	1 cut(s)	1007
ApeKI	GCWGC	1 cut(s)	764
ApoI	RAATTY	2 cut(s)	575, 884
AspLEI	GCGC	3 cut(s)	88, 121, 912
AspS9I	GGNCC	1 cut(s)	803
AsuHPI	GGTGA	3 cut(s)	223, 284, 688
AsuII	TTCGAA	1 cut(s)	1206
AvaII	GGWCC	1 cut(s)	803
AxyI	CCTNAGG	1 cut(s)	375
BanI	GGYRCC	1 cut(s)	909
BauI	CACGAG	1 cut(s)	1136
BbsI	GAAGAC	1 cut(s)	95
BbvI	GCAGC	1 cut(s)	776
BccI	CCATC	5 cut(s)	188, 315, 667, 900, 1008
BceAI	ACGGC	1 cut(s)	897
BcoDI	GTCTC	2 cut(s)	55, 656
BfaI	CTAG	2 cut(s)	800, 819
BfmI	CTRYAG	2 cut(s)	977, 1189
BfoI	RGCGCY	1 cut(s)	913
BglII	AGATCT	1 cut(s)	55
BisI	GCNGC	2 cut(s)	765, 1173
BlsI	GCNGC	2 cut(s)	766, 1174
Bme18I	GGWCC	1 cut(s)	803
BmgT120I	GGNCC	1 cut(s)	803
BmiI	GGNNCC	2 cut(s)	285, 911
BmsI	GCATC	3 cut(s)	33, 73, 625
BpiI	GAAGAC	1 cut(s)	95
Bpu14I	TTCGAA	1 cut(s)	1206
BpuEI	CTTGAG	1 cut(s)	642
Bsa29I	ATCGAT	1 cut(s)	1099
BsaAI	YACGTR	1 cut(s)	186
BsaHI	GRCGYC	1 cut(s)	910
BsaI	GGTCTC	1 cut(s)	55
BsaJI	CCNNGG	2 cut(s)	69, 964
BsaWI	WCCGGW	1 cut(s)	1007
Bsc4I	CCNNNNNNNGG	1 cut(s)	293
Bse1I	ACTGG	3 cut(s)	172, 861, 1030
Bse21I	CCTNAGG	1 cut(s)	375
BseAI	TCCGGA	1 cut(s)	1007
BseCI	ATCGAT	1 cut(s)	1099
BseDI	CCNNGG	2 cut(s)	69, 964
BseGI	GGATG	1 cut(s)	1000
BseLI	CCNNNNNNNGG	1 cut(s)	293
BseMII	CTCAG	8 cut(s)	66, 89, 121, 243, 389, 744, 924, 1122
BseNI	ACTGG	3 cut(s)	172, 861, 1030
BseRI	GAGGAG	2 cut(s)	602, 950
BseXI	GCAGC	1 cut(s)	776
BseYI	CCCAGC	1 cut(s)	767
BsgI	GTGCAG	1 cut(s)	783
BshNI	GGYRCC	1 cut(s)	909
BshVI	ATCGAT	1 cut(s)	1099
BsiSI	CCGG	1 cut(s)	1008
BslI	CCNNNNNNNGG	1 cut(s)	293
BsmAI	GTCTC	2 cut(s)	55, 656
BsmI	GAATGC	1 cut(s)	454
Bso31I	GGTCTC	1 cut(s)	55
Bsp119I	TTCGAA	1 cut(s)	1206
Bsp13I	TCCGGA	1 cut(s)	1007
Bsp143I	GATC	4 cut(s)	55, 289, 1015, 1096
Bsp19I	CCATGG	1 cut(s)	69
BspACI	CCGC	4 cut(s)	139, 267, 599, 1172
BspCNI	CTCAG	8 cut(s)	65, 90, 120, 244, 388, 745, 925, 1121
BspDI	ATCGAT	1 cut(s)	1099
BspEI	TCCGGA	1 cut(s)	1007
BspHI	TCATGA	1 cut(s)	871
BspLI	GGNNCC	2 cut(s)	285, 911
BspMAI	CTGCAG	1 cut(s)	981
BspPI	GGATC	1 cut(s)	1104
BspT104I	TTCGAA	1 cut(s)	1206
BspT107I	GGYRCC	1 cut(s)	909
BspTNI	GGTCTC	1 cut(s)	55
BsrBI	CCGCTC	1 cut(s)	1172
BsrI	ACTGG	3 cut(s)	172, 861, 1030
BssECI	CCNNGG	2 cut(s)	69, 964
BssMI	GATC	4 cut(s)	55, 289, 1015, 1096
BssNI	GRCGYC	1 cut(s)	910
BssSI	CACGAG	1 cut(s)	1136
BssT1I	CCWWGG	2 cut(s)	69, 964
Bst2BI	CACGAG	1 cut(s)	1136
Bst4CI	ACNGT	3 cut(s)	306, 465, 1193
Bst6I	CTCTTC	1 cut(s)	650
BstACI	GRCGYC	1 cut(s)	910
BstBAI	YACGTR	1 cut(s)	186
BstBI	TTCGAA	1 cut(s)	1206
BstDEI	CTNAG	8 cut(s)	52, 98, 107, 252, 375, 753, 933, 1108
BstDSI	CCRYGG	1 cut(s)	69
BstEII	GGTNACC	1 cut(s)	877
BstF5I	GGATG	1 cut(s)	1000
BstH2I	RGCGCY	1 cut(s)	913
BstHHI	GCGC	3 cut(s)	88, 121, 912
BstKTI	GATC	4 cut(s)	58, 292, 1018, 1099
BstMAI	GTCTC	2 cut(s)	55, 656
BstMBI	GATC	4 cut(s)	55, 289, 1015, 1096
BstNSI	RCATGY	1 cut(s)	946
BstPI	GGTNACC	1 cut(s)	877
BstSFI	CTRYAG	2 cut(s)	977, 1189
BstV1I	GCAGC	1 cut(s)	776
BstV2I	GAAGAC	1 cut(s)	95
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
Bsu15I	ATCGAT	1 cut(s)	1099
Bsu36I	CCTNAGG	1 cut(s)	375
BsuTUI	ATCGAT	1 cut(s)	1099
BtgI	CCRYGG	1 cut(s)	69
BtgZI	GCGATG	1 cut(s)	1190
BtsCI	GGATG	1 cut(s)	1000
BtsI	GCAGTG	1 cut(s)	710
BtsIMutI	CAGTG	4 cut(s)	165, 249, 710, 1037
CciI	TCATGA	1 cut(s)	871
CfoI	GCGC	3 cut(s)	88, 121, 912
Cfr13I	GGNCC	1 cut(s)	803
ClaI	ATCGAT	1 cut(s)	1099
Csp6I	GTAC	2 cut(s)	187, 940
CviJI	RGCY	7 cut(s)	332, 411, 554, 767, 782, 1122, 1135
CviKI_1	RGCY	7 cut(s)	332, 411, 554, 767, 782, 1122, 1135
CviQI	GTAC	2 cut(s)	187, 940
DdeI	CTNAG	8 cut(s)	52, 98, 107, 252, 375, 753, 933, 1108
DinI	GGCGCC	1 cut(s)	911
DpnI	GATC	4 cut(s)	57, 291, 1017, 1098
DpnII	GATC	4 cut(s)	55, 289, 1015, 1096
DraI	TTTAAA	1 cut(s)	828
Eam1104I	CTCTTC	1 cut(s)	650
EarI	CTCTTC	1 cut(s)	650
Eco130I	CCWWGG	2 cut(s)	69, 964
Eco31I	GGTCTC	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	803
Eco57I	CTGAAG	2 cut(s)	631, 939
Eco81I	CCTNAGG	1 cut(s)	375
Eco91I	GGTNACC	1 cut(s)	877
EcoO65I	GGTNACC	1 cut(s)	877
EcoT14I	CCWWGG	2 cut(s)	69, 964
EcoT22I	ATGCAT	1 cut(s)	1132
EgeI	GGCGCC	1 cut(s)	911
EheI	GGCGCC	1 cut(s)	911
ErhI	CCWWGG	2 cut(s)	69, 964
FalI	AAGNNNNNCTT	2 cut(s)	395, 427
FblI	GTMKAC	1 cut(s)	483
Fnu4HI	GCNGC	2 cut(s)	765, 1173
FokI	GGATG	1 cut(s)	987
Fsp4HI	GCNGC	2 cut(s)	765, 1173
FspBI	CTAG	2 cut(s)	800, 819
GlaI	GCGC	3 cut(s)	87, 120, 911
GluI	GCNGC	2 cut(s)	765, 1173
GsaI	CCCAGC	1 cut(s)	771
HaeII	RGCGCY	1 cut(s)	913
HapII	CCGG	1 cut(s)	1008
HhaI	GCGC	3 cut(s)	88, 121, 912
Hin1I	GRCGYC	1 cut(s)	910
Hin6I	GCGC	3 cut(s)	86, 119, 910
HinP1I	GCGC	3 cut(s)	86, 119, 910
HincII	GTYRAC	2 cut(s)	76, 421
HindII	GTYRAC	2 cut(s)	76, 421
HinfI	GANTC	7 cut(s)	13, 100, 128, 146, 202, 623, 1040
HpaII	CCGG	1 cut(s)	1008
HphI	GGTGA	3 cut(s)	223, 284, 688
Hpy166II	GTNNAC	5 cut(s)	76, 421, 484, 971, 1166
Hpy188I	TCNGA	8 cut(s)	24, 42, 55, 99, 207, 460, 839, 934
Hpy188III	TCNNGA	8 cut(s)	59, 287, 627, 734, 872, 1008, 1138, 1196
Hpy8I	GTNNAC	5 cut(s)	76, 421, 484, 971, 1166
Hpy99I	CGWCG	2 cut(s)	21, 248
HpyAV	CCTTC	1 cut(s)	1202
HpyCH4III	ACNGT	3 cut(s)	306, 465, 1193
HpyCH4IV	ACGT	3 cut(s)	185, 475, 535
HpyF3I	CTNAG	8 cut(s)	52, 98, 107, 252, 375, 753, 933, 1108
HpySE526I	ACGT	3 cut(s)	185, 475, 535
Hsp92I	GRCGYC	1 cut(s)	910
HspAI	GCGC	3 cut(s)	86, 119, 910
KasI	GGCGCC	1 cut(s)	909
Kpn2I	TCCGGA	1 cut(s)	1007
Kzo9I	GATC	4 cut(s)	55, 289, 1015, 1096
Lsp1109I	GCAGC	1 cut(s)	776
LweI	GCATC	3 cut(s)	33, 73, 625
MaeI	CTAG	2 cut(s)	800, 819
MaeII	ACGT	3 cut(s)	185, 475, 535
MaeIII	GTNAC	4 cut(s)	272, 314, 725, 877
MalI	GATC	4 cut(s)	57, 291, 1017, 1098
MbiI	CCGCTC	1 cut(s)	1172
MboI	GATC	4 cut(s)	55, 289, 1015, 1096
MboII	GAAGA	5 cut(s)	95, 183, 356, 637, 704
MflI	RGATCY	1 cut(s)	55
MluCI	AATT	6 cut(s)	356, 575, 884, 1079, 1116, 1157
Mly113I	GGCGCC	1 cut(s)	910
MlyI	GAGTC	2 cut(s)	109, 617
MmeI	TCCRAC	2 cut(s)	447, 1074
Mph1103I	ATGCAT	1 cut(s)	1132
MroI	TCCGGA	1 cut(s)	1007
MseI	TTAA	5 cut(s)	414, 569, 827, 953, 1146
MspA1I	CMGCKG	1 cut(s)	767
MspI	CCGG	1 cut(s)	1008
Mva1269I	GAATGC	1 cut(s)	454
NarI	GGCGCC	1 cut(s)	910
NcoI	CCATGG	1 cut(s)	69
NdeII	GATC	4 cut(s)	55, 289, 1015, 1096
NlaIV	GGNNCC	2 cut(s)	285, 911
NmuCI	GTSAC	3 cut(s)	272, 314, 725
NsiI	ATGCAT	1 cut(s)	1132
NspI	RCATGY	1 cut(s)	946
NspV	TTCGAA	1 cut(s)	1206
PagI	TCATGA	1 cut(s)	871
PctI	GAATGC	1 cut(s)	454
PfeI	GAWTC	5 cut(s)	13, 128, 146, 202, 1040
PkrI	GCNGC	2 cut(s)	766, 1174
PleI	GAGTC	2 cut(s)	108, 617
PluTI	GGCGCC	1 cut(s)	913
PpsI	GAGTC	2 cut(s)	108, 617
Ppu21I	YACGTR	1 cut(s)	186
PspEI	GGTNACC	1 cut(s)	877
PspFI	CCCAGC	1 cut(s)	767
PspN4I	GGNNCC	2 cut(s)	285, 911
PspPI	GGNCC	1 cut(s)	803
PstI	CTGCAG	1 cut(s)	981
PsuI	RGATCY	1 cut(s)	55
PvuII	CAGCTG	1 cut(s)	767
RsaI	GTAC	2 cut(s)	188, 941
RsaNI	GTAC	2 cut(s)	187, 940
SaqAI	TTAA	5 cut(s)	414, 569, 827, 953, 1146
SatI	GCNGC	2 cut(s)	765, 1173
Sau3AI	GATC	4 cut(s)	55, 289, 1015, 1096
Sau96I	GGNCC	1 cut(s)	803
SchI	GAGTC	2 cut(s)	109, 617
SfaNI	GCATC	3 cut(s)	33, 73, 625
SfcI	CTRYAG	2 cut(s)	977, 1189
SfoI	GGCGCC	1 cut(s)	911
SfuI	TTCGAA	1 cut(s)	1206
SinI	GGWCC	1 cut(s)	803
SmlI	CTYRAG	1 cut(s)	657
SmoI	CTYRAG	1 cut(s)	657
Sse9I	AATT	6 cut(s)	356, 575, 884, 1079, 1116, 1157
SsiI	CCGC	4 cut(s)	139, 267, 599, 1172
SspDI	GGCGCC	1 cut(s)	909
SspMI	CTAG	2 cut(s)	800, 819
StyI	CCWWGG	2 cut(s)	69, 964
TaaI	ACNGT	3 cut(s)	306, 465, 1193
TaiI	ACGT	3 cut(s)	188, 478, 538
TaqI	TCGA	2 cut(s)	1099, 1206
TasI	AATT	6 cut(s)	356, 575, 884, 1079, 1116, 1157
TatI	WGTACW	1 cut(s)	939
TauI	GCSGC	1 cut(s)	1175
TfiI	GAWTC	5 cut(s)	13, 128, 146, 202, 1040
Tru1I	TTAA	5 cut(s)	414, 569, 827, 953, 1146
Tru9I	TTAA	5 cut(s)	414, 569, 827, 953, 1146
TscAI	CASTG	4 cut(s)	172, 256, 710, 1037
TseFI	GTSAC	3 cut(s)	272, 314, 725
TseI	GCWGC	1 cut(s)	764
Tsp45I	GTSAC	3 cut(s)	272, 314, 725
TspDTI	ATGAA	6 cut(s)	20, 26, 461, 734, 785, 1032
TspGWI	ACGGA	1 cut(s)	232
TspRI	CASTG	4 cut(s)	172, 256, 710, 1037
VpaK11BI	GGWCC	1 cut(s)	803
XapI	RAATTY	2 cut(s)	575, 884
XceI	RCATGY	1 cut(s)	946
XmiI	GTMKAC	1 cut(s)	483
XspI	CTAG	2 cut(s)	800, 819
Zsp2I	ATGCAT	1 cut(s)	1132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.