Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0005986

Physical Location & Seq

Genomic Coordinates Reverse (-)

14476023 .. 14478969

Gene Structure 2947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG090800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1093 bp

ATGGACTCTCGGCTCAATGGCTCTGCTCGTCTCATGCTGGTTTCAGATCTTGATTACACAATGGTGGATCATGATGATCATCGAAATACTTCTCTTCTTCGGTTCAATGCGCTATGGGAAGCATATTATCGCCATGATTCTCTGCTCGTATTTTCTACCGGAAGATCACCTCTATCTTACAAACCCTTGCGGAATGAGAAGCCCTTGTTGACGCCCGATATTACTATCATGTCTGTTGGAACTGAGATTATCTACGGGGAGGGTGACGCAATGCTACCCGATGATGGTTGGCAACACTATCTCAATCACAATTGGGATAAAAATATTGTTGTCGAGGAAACAACTAAGTTTCCTCAACTAACTCCTCAGGCGGAGTCAGAGCAACGACCTCACAAGGTTAGCTTTTATGTAGACAAGGTTGAGGCAACTGAGATAATGAATGTTCTATCAGAACGGTTGGCGAAACGTGGGTTAGATGTAAAGATAATATATAGCAGTGGTATTGCTTTGGATGTGTTACTAAAAGGTGCTGGCAAAGGGCAAGCTCTTGCATATCTGTTAAAGAAATTCAAAATTGATGGCAAACTGCCCTGCAATACAATTGTTTGTGGTGACTCTGGAAATGATGCCGAACTCTTCACTCTTCCTGAAGTCTATGGTGTCATGGTTGGTAATGCACAGGAAGAATTGTTACACTGGTCCAAATGTATCGCCAAGAGATATCAAAGACTTCCAAAGTGCAAAGTGAACATTTTCAGCCCCGCTTATGAAGTGGTAAAGTTCTATCTGTTTTATGAAAAATGGCGACGTGCAGAGGTAGAGAAATCAGAGCAGTATATGCAGAACTTAAGATCGATCTTTCATTCATTGGGTGTCTTTGTCCATCCCTCGGGAGTGGAGCTACCTCTCCACCAGTGCATAGATGCAATGGCAAGGTTGTATGGAGATAAGCAAGGAAATCAATTTTGGACCTGGGTGGATCAATTAACCTCAGCTCAAATTGGCTCTGACACATGGCTGGTGAAGTTCTACAAGTGGGAACTGAATGAGAATGAGCGGCAATGCACGTTAACTAGTGTTAATAAAGTCACAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

S6PP S6PP_C

Protein Analysis

364

Amino Acids

41.85

Weight (kDa)

6.23

Isoelectric Point (pI)

36.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S6PP	PF05116	10 - 244	5e-83	Sucrose-6F-phosphate phosphohydrolase
Hydrolase_3	PF08282	104 - 239	3.4e-13	haloacid dehalogenase-like hydrolase
S6PP_C	PF08472	254 - 360	1.4e-48	Sucrose-6-phosphate phosphohydrolase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54270
fragaria_vesca	FvH4_7g05160 FvH4_7g05160 FvH4_7g05160 FvH4_7g05160 FvH4_7g05160 FvH4_7g05160
malus_domestica	MD02G1260600.v1.1 MD02G1260700.v1.1
prunus_persica	Prupe.5G001900_v2.0.a1 Prupe.5G001900_v2.0.a1 Prupe.5G001900_v2.0.a1 Prupe.5G001900_v2.0.a1 Prupe.5G001900_v2.0.a1 Prupe.5G001900_v2.0.a1
pyrus_communis	pycom02g22250
rosa_chinensis	RchiOBHm_Chr1g0331691
rosa_laevigata	RLG00000029723
rosa_multiflora	Rmu_sc0005044.1_g000009
rosa_roxburghii	Rroxscaffold_4G00318910 Rroxscaffold_5G00341870
rosa_rugosa	Rorug01G0095400
rosa_samantha	Rh1AG119300 Rh1BG090800 Rh1CG114400 Rh1DG124800
rosa_wichuraiana	Rw1G009640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1057
AccI	GTMKAC	1 cut(s)	411
AciI	CCGC	4 cut(s)	190, 371, 762, 1057
AclWI	GGATC	2 cut(s)	75, 987
AcsI	RAATTY	1 cut(s)	566
AcuI	CTGAAG	1 cut(s)	669
AcyI	GRCGYC	1 cut(s)	212
AfiI	CCNNNNNNNGG	2 cut(s)	284, 889
AflII	CTTAAG	1 cut(s)	847
AgsI	TTSAA	2 cut(s)	106, 571
AhlI	ACTAGT	1 cut(s)	1073
AjiI	CACGTC	1 cut(s)	809
AjnI	CCWGG	1 cut(s)	971
AjuI	GAANNNNNNNTTGG	2 cut(s)	949, 981
AleI	CACNNNNGTG	1 cut(s)	62
AluBI	AGCT	4 cut(s)	402, 545, 901, 995
AluI	AGCT	4 cut(s)	402, 545, 901, 995
Alw26I	GTCTC	1 cut(s)	35
AlwI	GGATC	2 cut(s)	75, 987
Ama87I	CYCGRG	1 cut(s)	889
ApoI	RAATTY	1 cut(s)	566
Asp700I	GAANNNNTTC	2 cut(s)	88, 752
AspLEI	GCGC	1 cut(s)	112
AspS9I	GGNCC	2 cut(s)	699, 969
AsuHPI	GGTGA	4 cut(s)	159, 275, 623, 1033
AvaI	CYCGRG	1 cut(s)	889
AvaII	GGWCC	2 cut(s)	699, 969
AxyI	CCTNAGG	1 cut(s)	366
BarI	GAAGNNNNNNTAC	2 cut(s)	675, 707
BbvCI	CCTCAGC	1 cut(s)	991
BccI	CCATC	3 cut(s)	278, 572, 891
BciT130I	CCWGG	1 cut(s)	973
BclI	TGATCA	1 cut(s)	76
BcoDI	GTCTC	1 cut(s)	35
BcuI	ACTAGT	1 cut(s)	1073
BfaI	CTAG	1 cut(s)	1074
BfrI	CTTAAG	1 cut(s)	847
BglII	AGATCT	1 cut(s)	46
BisI	GCNGC	1 cut(s)	1058
BlsI	GCNGC	1 cut(s)	1059
Bme1390I	CCNGG	1 cut(s)	973
Bme18I	GGWCC	2 cut(s)	699, 969
BmeT110I	CYCGRG	1 cut(s)	889
BmgBI	CACGTC	1 cut(s)	809
BmgT120I	GGNCC	2 cut(s)	699, 969
BmrFI	CCNGG	1 cut(s)	973
BmsI	GCATC	2 cut(s)	616, 913
Bpu10I	CCTNAGC	1 cut(s)	991
Bsa29I	ATCGAT	1 cut(s)	854
BsaBI	GATNNNNATC	1 cut(s)	78
BsaHI	GRCGYC	1 cut(s)	212
BsaJI	CCNNGG	2 cut(s)	888, 972
BsaWI	WCCGGW	1 cut(s)	158
Bsc4I	CCNNNNNNNGG	2 cut(s)	284, 889
Bse1I	ACTGG	2 cut(s)	701, 913
Bse21I	CCTNAGG	1 cut(s)	366
Bse3DI	GCAATG	3 cut(s)	276, 933, 1067
Bse8I	GATNNNNATC	1 cut(s)	78
BseBI	CCWGG	1 cut(s)	973
BseCI	ATCGAT	1 cut(s)	854
BseDI	CCNNGG	2 cut(s)	888, 972
BseGI	GGATG	2 cut(s)	517, 883
BseJI	GATNNNNATC	1 cut(s)	78
BseLI	CCNNNNNNNGG	2 cut(s)	284, 889
BseMI	GCAATG	3 cut(s)	276, 933, 1067
BseMII	CTCAG	4 cut(s)	234, 380, 420, 1005
BseNI	ACTGG	2 cut(s)	701, 913
BseRI	GAGGAG	1 cut(s)	354
BsgI	GTGCAG	1 cut(s)	831
BshVI	ATCGAT	1 cut(s)	854
BsiHKCI	CYCGRG	1 cut(s)	889
BsiSI	CCGG	1 cut(s)	159
BslI	CCNNNNNNNGG	2 cut(s)	284, 889
BsmAI	GTCTC	1 cut(s)	35
BsmBI	CGTCTC	1 cut(s)	35
BsoBI	CYCGRG	1 cut(s)	889
Bsp143I	GATC	7 cut(s)	46, 67, 76, 164, 851, 855, 979
BspACI	CCGC	4 cut(s)	190, 371, 762, 1057
BspCNI	CTCAG	4 cut(s)	235, 379, 421, 1004
BspDI	ATCGAT	1 cut(s)	854
BspHI	TCATGA	1 cut(s)	70
BspPI	GGATC	2 cut(s)	75, 987
BspTI	CTTAAG	1 cut(s)	847
BsrBI	CCGCTC	1 cut(s)	1057
BsrDI	GCAATG	3 cut(s)	276, 933, 1067
BsrI	ACTGG	2 cut(s)	701, 913
BssECI	CCNNGG	2 cut(s)	888, 972
BssMI	GATC	7 cut(s)	46, 67, 76, 164, 851, 855, 979
BssNI	GRCGYC	1 cut(s)	212
Bst2UI	CCWGG	1 cut(s)	973
Bst4CI	ACNGT	1 cut(s)	456
Bst6I	CTCTTC	3 cut(s)	99, 641, 648
BstACI	GRCGYC	1 cut(s)	212
BstAFI	CTTAAG	1 cut(s)	847
BstAPI	GCANNNNNTGC	1 cut(s)	838
BstC8I	GCNNGC	2 cut(s)	532, 543
BstDEI	CTNAG	5 cut(s)	243, 345, 366, 429, 991
BstF5I	GGATG	2 cut(s)	517, 883
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	7 cut(s)	49, 70, 79, 167, 854, 858, 982
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	7 cut(s)	46, 67, 76, 164, 851, 855, 979
BstMWI	GCNNNNNNNGC	1 cut(s)	838
BstNI	CCWGG	1 cut(s)	973
BstSCI	CCNGG	1 cut(s)	971
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
Bsu15I	ATCGAT	1 cut(s)	854
Bsu36I	CCTNAGG	1 cut(s)	366
BsuTUI	ATCGAT	1 cut(s)	854
BtrI	CACGTC	1 cut(s)	809
BtsCI	GGATG	2 cut(s)	517, 883
BtsI	GCAGTG	1 cut(s)	502
BtsIMutI	CAGTG	3 cut(s)	502, 694, 920
Cac8I	GCNNGC	2 cut(s)	532, 543
CciI	TCATGA	1 cut(s)	70
CfoI	GCGC	1 cut(s)	112
Cfr13I	GGNCC	2 cut(s)	699, 969
ClaI	ATCGAT	1 cut(s)	854
CseI	GACGC	2 cut(s)	220, 275
CviAII	CATG	6 cut(s)	34, 71, 134, 229, 664, 1014
DdeI	CTNAG	5 cut(s)	243, 345, 366, 429, 991
DpnI	GATC	7 cut(s)	48, 69, 78, 166, 853, 857, 981
DpnII	GATC	7 cut(s)	46, 67, 76, 164, 851, 855, 979
Eam1104I	CTCTTC	3 cut(s)	99, 641, 648
EarI	CTCTTC	3 cut(s)	99, 641, 648
EciI	GGCGGA	1 cut(s)	386
Eco32I	GATATC	1 cut(s)	722
Eco47I	GGWCC	2 cut(s)	699, 969
Eco57I	CTGAAG	1 cut(s)	669
Eco81I	CCTNAGG	1 cut(s)	366
Eco88I	CYCGRG	1 cut(s)	889
EcoRII	CCWGG	1 cut(s)	971
EcoRV	GATATC	1 cut(s)	722
Esp3I	CGTCTC	1 cut(s)	35
FaeI	CATG	6 cut(s)	37, 74, 137, 232, 667, 1017
FalI	AAGNNNNNCTT	2 cut(s)	386, 418
FatI	CATG	6 cut(s)	33, 70, 133, 228, 663, 1013
FauI	CCCGC	1 cut(s)	769
FbaI	TGATCA	1 cut(s)	76
FblI	GTMKAC	1 cut(s)	411
Fnu4HI	GCNGC	1 cut(s)	1058
FokI	GGATG	2 cut(s)	524, 870
Fsp4HI	GCNGC	1 cut(s)	1058
FspBI	CTAG	1 cut(s)	1074
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	1 cut(s)	1058
HapII	CCGG	1 cut(s)	159
HgaI	GACGC	2 cut(s)	220, 275
HhaI	GCGC	1 cut(s)	112
Hin1I	GRCGYC	1 cut(s)	212
Hin1II	CATG	6 cut(s)	37, 74, 137, 232, 667, 1017
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HincII	GTYRAC	2 cut(s)	210, 1071
HindII	GTYRAC	2 cut(s)	210, 1071
HinfI	GANTC	4 cut(s)	5, 137, 374, 614
HpaI	GTTAAC	1 cut(s)	1071
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	4 cut(s)	159, 275, 623, 1033
Hpy166II	GTNNAC	4 cut(s)	210, 412, 748, 1071
Hpy188I	TCNGA	5 cut(s)	46, 379, 451, 829, 1009
Hpy188III	TCNNGA	5 cut(s)	50, 71, 618, 647, 891
Hpy8I	GTNNAC	4 cut(s)	210, 412, 748, 1071
Hpy99I	CGWCG	1 cut(s)	810
HpyCH4III	ACNGT	1 cut(s)	456
HpyCH4IV	ACGT	3 cut(s)	466, 808, 1067
HpyCH4V	TGCA	9 cut(s)	551, 594, 677, 741, 812, 841, 918, 926, 1065
HpyF10VI	GCNNNNNNNGC	1 cut(s)	838
HpyF3I	CTNAG	5 cut(s)	243, 345, 366, 429, 991
HpySE526I	ACGT	3 cut(s)	466, 808, 1067
Hsp92I	GRCGYC	1 cut(s)	212
Hsp92II	CATG	6 cut(s)	37, 74, 137, 232, 667, 1017
HspAI	GCGC	1 cut(s)	110
Ksp22I	TGATCA	1 cut(s)	76
KspAI	GTTAAC	1 cut(s)	1071
Kzo9I	GATC	7 cut(s)	46, 67, 76, 164, 851, 855, 979
LmnI	GCTCC	1 cut(s)	898
LweI	GCATC	2 cut(s)	616, 913
MaeI	CTAG	1 cut(s)	1074
MaeII	ACGT	3 cut(s)	466, 808, 1067
MaeIII	GTNAC	5 cut(s)	263, 516, 611, 690, 1087
MalI	GATC	7 cut(s)	48, 69, 78, 166, 853, 857, 981
MbiI	CCGCTC	1 cut(s)	1057
MboI	GATC	7 cut(s)	46, 67, 76, 164, 851, 855, 979
MboII	GAAGA	6 cut(s)	86, 89, 174, 628, 635, 695
MfeI	CAATTG	2 cut(s)	310, 600
MflI	RGATCY	1 cut(s)	46
MluCI	AATT	8 cut(s)	310, 566, 573, 600, 686, 962, 983, 999
MlyI	GAGTC	2 cut(s)	383, 608
MmeI	TCCRAC	1 cut(s)	217
MroXI	GAANNNNTTC	2 cut(s)	88, 752
MseI	TTAA	5 cut(s)	560, 848, 986, 1070, 1080
MslI	CAYNNNNRTG	1 cut(s)	62
MspCI	CTTAAG	1 cut(s)	847
MspI	CCGG	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	973
MunI	CAATTG	2 cut(s)	310, 600
MvaI	CCWGG	1 cut(s)	973
MwoI	GCNNNNNNNGC	1 cut(s)	838
NdeII	GATC	7 cut(s)	46, 67, 76, 164, 851, 855, 979
NlaIII	CATG	6 cut(s)	37, 74, 137, 232, 667, 1017
NmuCI	GTSAC	3 cut(s)	263, 611, 1087
OliI	CACNNNNGTG	1 cut(s)	62
PagI	TCATGA	1 cut(s)	70
PdmI	GAANNNNTTC	2 cut(s)	88, 752
PfeI	GAWTC	1 cut(s)	137
PkrI	GCNGC	1 cut(s)	1059
PleI	GAGTC	2 cut(s)	382, 608
PpsI	GAGTC	2 cut(s)	382, 608
Psp6I	CCWGG	1 cut(s)	971
PspGI	CCWGG	1 cut(s)	971
PspPI	GGNCC	2 cut(s)	699, 969
PsuI	RGATCY	1 cut(s)	46
RseI	CAYNNNNRTG	1 cut(s)	62
SaqAI	TTAA	5 cut(s)	560, 848, 986, 1070, 1080
SatI	GCNGC	1 cut(s)	1058
Sau3AI	GATC	7 cut(s)	46, 67, 76, 164, 851, 855, 979
Sau96I	GGNCC	2 cut(s)	699, 969
SchI	GAGTC	2 cut(s)	383, 608
ScrFI	CCNGG	1 cut(s)	973
SfaNI	GCATC	2 cut(s)	616, 913
SinI	GGWCC	2 cut(s)	699, 969
SmiMI	CAYNNNNRTG	1 cut(s)	62
SmlI	CTYRAG	1 cut(s)	847
SmoI	CTYRAG	1 cut(s)	847
SpeI	ACTAGT	1 cut(s)	1073
Sse9I	AATT	8 cut(s)	310, 566, 573, 600, 686, 962, 983, 999
SsiI	CCGC	4 cut(s)	190, 371, 762, 1057
SspI	AATATT	1 cut(s)	325
SspMI	CTAG	1 cut(s)	1074
StyD4I	CCNGG	1 cut(s)	971
TaaI	ACNGT	1 cut(s)	456
TaiI	ACGT	3 cut(s)	469, 811, 1070
TaqI	TCGA	3 cut(s)	82, 333, 854
TasI	AATT	8 cut(s)	310, 566, 573, 600, 686, 962, 983, 999
TauI	GCSGC	1 cut(s)	1060
TfiI	GAWTC	1 cut(s)	137
Tru1I	TTAA	5 cut(s)	560, 848, 986, 1070, 1080
Tru9I	TTAA	5 cut(s)	560, 848, 986, 1070, 1080
TscAI	CASTG	3 cut(s)	502, 701, 920
TseFI	GTSAC	3 cut(s)	263, 611, 1087
Tsp45I	GTSAC	3 cut(s)	263, 611, 1087
TspDTI	ATGAA	5 cut(s)	452, 783, 810, 851, 855
TspRI	CASTG	3 cut(s)	502, 701, 920
Vha464I	CTTAAG	1 cut(s)	847
VpaK11BI	GGWCC	2 cut(s)	699, 969
XapI	RAATTY	1 cut(s)	566
XmiI	GTMKAC	1 cut(s)	411
XmnI	GAANNNNTTC	2 cut(s)	88, 752
XspI	CTAG	1 cut(s)	1074

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.