Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0005986

Physical Location & Seq

Genomic Coordinates Reverse (-)

20389789 .. 20390640

Gene Structure 852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g22250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGTGAGTAATGCACAAGAAGAATTGTTGCAGTGGTATGCAGAAAATGTGAGCGACAATCCTAATATGCTTCATGCAACTGAGAGATGTGCAGCTGGTATAATACAAGCACTTGGACATTTTCATCTAGGTCCAAATGTATCGCCAAGAGATTTCAAAGACTTCCGAAAGTGCAAAGTGGAAATGTCCAGTCCTGCTCATGAGGTAGTCAAATTCTTTTTGTTCTATGAGAGATGGCGCCGTGCTGAAGTAGAGAAATCTGAGGAGTATATCCAAAACTTAAAACCAGTCTTTCATTCATTGGGTATCTTTGTCCATCCCTCCGGAGTTGAGCTACCTATCCCCCAGTGCATAGATTCGTTGGCAGGGTTGCATGGAGATAAGCAGGGAAAACAATTTTGGACATGGGTCGATCGATTATCGTTGGTTCAAATTGGCTCAAATGCATGGCTCGTGAAGTTTAATAAGTGGGAATTGTGTGGTGAGATGAGTCTACCTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

S6PP S6PP_C

Protein Analysis

168

Amino Acids

19.25

Weight (kDa)

6.15

Isoelectric Point (pI)

41.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S6PP	PF05116	1 - 42	3.2e-11	Sucrose-6F-phosphate phosphohydrolase
S6PP_C	PF08472	65 - 163	6e-44	Sucrose-6-phosphate phosphohydrolase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54270
fragaria_vesca	FvH4_7g05160 FvH4_7g05160 FvH4_7g05160 FvH4_7g05160 FvH4_7g05160 FvH4_7g05160
malus_domestica	MD02G1260600.v1.1 MD02G1260700.v1.1
prunus_persica	Prupe.5G001900_v2.0.a1 Prupe.5G001900_v2.0.a1 Prupe.5G001900_v2.0.a1 Prupe.5G001900_v2.0.a1 Prupe.5G001900_v2.0.a1 Prupe.5G001900_v2.0.a1
pyrus_communis	pycom02g22250
rosa_chinensis	RchiOBHm_Chr1g0331691
rosa_laevigata	RLG00000029723
rosa_multiflora	Rmu_sc0005044.1_g000009
rosa_roxburghii	Rroxscaffold_4G00318910 Rroxscaffold_5G00341870
rosa_rugosa	Rorug01G0095400
rosa_samantha	Rh1AG119300 Rh1BG090800 Rh1CG114400 Rh1DG124800
rosa_wichuraiana	Rw1G009640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	237
AccI	GTMKAC	1 cut(s)	493
AccIII	TCCGGA	1 cut(s)	323
AcsI	RAATTY	1 cut(s)	212
AcuI	CTGAAG	1 cut(s)	267
AcyI	GRCGYC	1 cut(s)	238
AgsI	TTSAA	2 cut(s)	157, 431
AjuI	GAANNNNNNNTTGG	2 cut(s)	382, 414
AluBI	AGCT	2 cut(s)	95, 334
AluI	AGCT	2 cut(s)	95, 334
Aor13HI	TCCGGA	1 cut(s)	323
ApeKI	GCWGC	1 cut(s)	92
ApoI	RAATTY	1 cut(s)	212
AspLEI	GCGC	1 cut(s)	240
AspS9I	GGNCC	1 cut(s)	131
AsuHPI	GGTGA	2 cut(s)	16, 494
AvaII	GGWCC	1 cut(s)	131
BanI	GGYRCC	1 cut(s)	237
BauI	CACGAG	1 cut(s)	452
BbvI	GCAGC	1 cut(s)	104
BccI	CCATC	2 cut(s)	228, 324
BceAI	ACGGC	1 cut(s)	225
BfaI	CTAG	2 cut(s)	128, 502
BfoI	RGCGCY	1 cut(s)	241
BisI	GCNGC	1 cut(s)	93
BlsI	GCNGC	1 cut(s)	94
Bme18I	GGWCC	1 cut(s)	131
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	1 cut(s)	239
BmrI	ACTGGG	1 cut(s)	340
BmuI	ACTGGG	1 cut(s)	340
BoxI	GACNNNNGTC	1 cut(s)	407
Bsa29I	ATCGAT	1 cut(s)	415
BsaHI	GRCGYC	1 cut(s)	238
BsaWI	WCCGGW	1 cut(s)	323
Bse1I	ACTGG	3 cut(s)	189, 287, 346
BseAI	TCCGGA	1 cut(s)	323
BseCI	ATCGAT	1 cut(s)	415
BseGI	GGATG	1 cut(s)	316
BseMII	CTCAG	2 cut(s)	72, 252
BseNI	ACTGG	3 cut(s)	189, 287, 346
BseRI	GAGGAG	1 cut(s)	278
BseXI	GCAGC	1 cut(s)	104
BsgI	GTGCAG	1 cut(s)	111
Bsh1285I	CGRYCG	1 cut(s)	415
BshNI	GGYRCC	1 cut(s)	237
BshVI	ATCGAT	1 cut(s)	415
BsiEI	CGRYCG	1 cut(s)	415
BsiSI	CCGG	1 cut(s)	324
Bsp13I	TCCGGA	1 cut(s)	323
Bsp143I	GATC	1 cut(s)	412
BspCNI	CTCAG	2 cut(s)	73, 253
BspDI	ATCGAT	1 cut(s)	415
BspEI	TCCGGA	1 cut(s)	323
BspHI	TCATGA	1 cut(s)	199
BspLI	GGNNCC	1 cut(s)	239
BspT107I	GGYRCC	1 cut(s)	237
BsrI	ACTGG	3 cut(s)	189, 287, 346
BssMI	GATC	1 cut(s)	412
BssNI	GRCGYC	1 cut(s)	238
BssSI	CACGAG	1 cut(s)	452
Bst2BI	CACGAG	1 cut(s)	452
BstACI	GRCGYC	1 cut(s)	238
BstDEI	CTNAG	2 cut(s)	81, 261
BstF5I	GGATG	1 cut(s)	316
BstH2I	RGCGCY	1 cut(s)	241
BstHHI	GCGC	1 cut(s)	240
BstKTI	GATC	1 cut(s)	415
BstMBI	GATC	1 cut(s)	412
BstMCI	CGRYCG	1 cut(s)	415
BstPAI	GACNNNNGTC	1 cut(s)	407
BstV1I	GCAGC	1 cut(s)	104
Bsu15I	ATCGAT	1 cut(s)	415
BsuTUI	ATCGAT	1 cut(s)	415
BtsCI	GGATG	1 cut(s)	316
BtsI	GCAGTG	1 cut(s)	38
BtsIMutI	CAGTG	2 cut(s)	38, 353
CciI	TCATGA	1 cut(s)	199
CfoI	GCGC	1 cut(s)	240
Cfr13I	GGNCC	1 cut(s)	131
ClaI	ATCGAT	1 cut(s)	415
CviAII	CATG	5 cut(s)	74, 200, 374, 405, 447
CviJI	RGCY	4 cut(s)	95, 334, 438, 451
CviKI_1	RGCY	4 cut(s)	95, 334, 438, 451
DdeI	CTNAG	2 cut(s)	81, 261
DinI	GGCGCC	1 cut(s)	239
DpnI	GATC	1 cut(s)	414
DpnII	GATC	1 cut(s)	412
Eco47I	GGWCC	1 cut(s)	131
Eco57I	CTGAAG	1 cut(s)	267
EcoT22I	ATGCAT	1 cut(s)	448
EgeI	GGCGCC	1 cut(s)	239
EheI	GGCGCC	1 cut(s)	239
FaeI	CATG	5 cut(s)	77, 203, 377, 408, 450
FatI	CATG	5 cut(s)	73, 199, 373, 404, 446
FblI	GTMKAC	1 cut(s)	493
Fnu4HI	GCNGC	1 cut(s)	93
FokI	GGATG	1 cut(s)	303
Fsp4HI	GCNGC	1 cut(s)	93
FspBI	CTAG	2 cut(s)	128, 502
GlaI	GCGC	1 cut(s)	239
GluI	GCNGC	1 cut(s)	93
HaeII	RGCGCY	1 cut(s)	241
HapII	CCGG	1 cut(s)	324
HhaI	GCGC	1 cut(s)	240
Hin1I	GRCGYC	1 cut(s)	238
Hin1II	CATG	5 cut(s)	77, 203, 377, 408, 450
Hin6I	GCGC	1 cut(s)	238
HinP1I	GCGC	1 cut(s)	238
HinfI	GANTC	2 cut(s)	356, 490
HpaII	CCGG	1 cut(s)	324
HphI	GGTGA	2 cut(s)	16, 494
Hpy166II	GTNNAC	1 cut(s)	494
Hpy188I	TCNGA	2 cut(s)	167, 262
Hpy188III	TCNNGA	3 cut(s)	200, 324, 454
Hpy8I	GTNNAC	1 cut(s)	494
HpyCH4V	TGCA	9 cut(s)	14, 31, 41, 77, 92, 174, 351, 373, 446
HpyF3I	CTNAG	2 cut(s)	81, 261
Hsp92I	GRCGYC	1 cut(s)	238
Hsp92II	CATG	5 cut(s)	77, 203, 377, 408, 450
HspAI	GCGC	1 cut(s)	238
KasI	GGCGCC	1 cut(s)	237
Kpn2I	TCCGGA	1 cut(s)	323
Kzo9I	GATC	1 cut(s)	412
LpnPI	CCDG	8 cut(s)	81, 202, 207, 300, 337, 351, 359, 371
Lsp1109I	GCAGC	1 cut(s)	104
MaeI	CTAG	2 cut(s)	128, 502
MalI	GATC	1 cut(s)	414
MboI	GATC	1 cut(s)	412
MboII	GAAGA	1 cut(s)	32
MluCI	AATT	5 cut(s)	23, 212, 395, 432, 473
Mly113I	GGCGCC	1 cut(s)	238
MlyI	GAGTC	1 cut(s)	499
MnlI	CCTC	3 cut(s)	196, 256, 331
Mph1103I	ATGCAT	1 cut(s)	448
MroI	TCCGGA	1 cut(s)	323
MseI	TTAA	2 cut(s)	281, 462
MspA1I	CMGCKG	1 cut(s)	95
MspI	CCGG	1 cut(s)	324
NarI	GGCGCC	1 cut(s)	238
NdeII	GATC	1 cut(s)	412
NlaIII	CATG	5 cut(s)	77, 203, 377, 408, 450
NlaIV	GGNNCC	1 cut(s)	239
NsiI	ATGCAT	1 cut(s)	448
PagI	TCATGA	1 cut(s)	199
PfeI	GAWTC	1 cut(s)	356
PkrI	GCNGC	1 cut(s)	94
Ple19I	CGATCG	1 cut(s)	415
PleI	GAGTC	1 cut(s)	498
PluTI	GGCGCC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	498
PshAI	GACNNNNGTC	1 cut(s)	407
PspN4I	GGNNCC	1 cut(s)	239
PspPI	GGNCC	1 cut(s)	131
PvuI	CGATCG	1 cut(s)	415
PvuII	CAGCTG	1 cut(s)	95
SaqAI	TTAA	2 cut(s)	281, 462
SatI	GCNGC	1 cut(s)	93
Sau3AI	GATC	1 cut(s)	412
Sau96I	GGNCC	1 cut(s)	131
SchI	GAGTC	1 cut(s)	499
SetI	ASST	6 cut(s)	97, 133, 207, 336, 340, 499
SfoI	GGCGCC	1 cut(s)	239
SinI	GGWCC	1 cut(s)	131
Sse9I	AATT	5 cut(s)	23, 212, 395, 432, 473
SspDI	GGCGCC	1 cut(s)	237
SspMI	CTAG	2 cut(s)	128, 502
TaqI	TCGA	2 cut(s)	411, 415
TasI	AATT	5 cut(s)	23, 212, 395, 432, 473
TfiI	GAWTC	1 cut(s)	356
Tru1I	TTAA	2 cut(s)	281, 462
Tru9I	TTAA	2 cut(s)	281, 462
TscAI	CASTG	2 cut(s)	38, 353
TseI	GCWGC	1 cut(s)	92
TspDTI	ATGAA	4 cut(s)	62, 113, 284, 288
TspRI	CASTG	2 cut(s)	38, 353
VpaK11BI	GGWCC	1 cut(s)	131
XapI	RAATTY	1 cut(s)	212
XmiI	GTMKAC	1 cut(s)	493
XspI	CTAG	2 cut(s)	128, 502
Zsp2I	ATGCAT	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.