Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006332

Physical Location & Seq

Genomic Coordinates Reverse (-)

20273672 .. 20276016

Gene Structure 2345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G54770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGACGACGAGCAACAACGTGAACGGATGTTTCGGAGACACGAAGCTGACCAAAGTGTTCGTAGGAGGATTGGCTTGGGATACTCACAAAGAAGCAATGTATGATCATTTCATCAAGTATGGGGACATCTTGGAGGCAGTCATTATCTCCGACAAACTCACTCGCCGTTCCAAAGGATATGGCTTTGTGACTTTCAAAGATGCGAAAGCTGCCACGAGAGCTTGCGAAGACTCTACTCCGATCATCAATGGCCGCCGTGCCAACTGCAATCTCGCCTCCCTCGGTGGCCGTCTTCGTAAATCCCCTACCATGACCTCTCCTCAACAAGGACCAAAAAATGGGAACAGGGCCACGCCACCACATGTTGGAAATCATTCTCAGTGGTACTACCCGTCCGGATTCACAAACCAGCAACATCAACAACAAAATCATCAAGCCGTTCCTTTCTATGGGTACCCTTCCGCCTACGTTGCCCCGAACATGACCTTCAATCAAAAAGTTGGATATGTCGGAGGAACCTATATGAACGGATACTATGCACAAATGCAACCACAACCGCAATCGCAGCCACAACCGCAATATTACCACCATCACATGTATGGTGGAGGACGAGTTATGGTTGGGGCAGCAAGTCCAATGGTGCCTTTCTACACTGTCTATCCTTATCATCAATCTCAAGCCATCGGGTTTCCACAACCTTCATTTTCGAAACCTCTTTCTTTTTCCACTCCTCCTATATCAGGCACAGTTGGAGGAGAGAGCATACAGAAGAAGGCCATACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010029 GO:0010033 GO:0010035 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0097159 GO:0097305 GO:1900140 GO:1901363 GO:1901700 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

261

Amino Acids

28.86

Weight (kDa)

9.57

Isoelectric Point (pI)

51.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	19 - 76	1e-15	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54770 AT3G54770 AT3G54770
fragaria_vesca	FvH4_7g20260 FvH4_7g20260 FvH4_7g20260 FvH4_7g20260
malus_domestica	MD01G1112300.v1.1 MD07G1180100.v1.1
prunus_persica	Prupe.2G219600_v2.0.a1 Prupe.2G219600_v2.0.a1 Prupe.2G219600_v2.0.a1
pyrus_communis	pycom01g14080 pycom07g17340
rosa_chinensis	RchiOBHm_Chr1g0364201
rosa_laevigata	RLG00000027506
rosa_multiflora	Rmu_sc0000071.1_g000004
rosa_roxburghii	Rroxscaffold_4G00292570
rosa_rugosa	Rorug01G0314600.1 Rorug01G0314700 Rorug01G0314700 Rorug01G0314800
rosa_samantha	Rh1AG322100 Rh1BG284900 Rh1CG301400 Rh1DG316300
rosa_wichuraiana	Rw1G028530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	453
AccB1I	GGYRCC	2 cut(s)	453, 640
AccB7I	CCANNNNNTGG	2 cut(s)	338, 365
AccIII	TCCGGA	1 cut(s)	395
AciI	CCGC	4 cut(s)	253, 462, 557, 575
AcoI	YGGCCR	2 cut(s)	250, 286
AfaI	GTAC	2 cut(s)	386, 455
AfiI	CCNNNNNNNGG	5 cut(s)	326, 338, 365, 449, 740
AflIII	ACRYGT	2 cut(s)	361, 594
AgsI	TTSAA	2 cut(s)	196, 490
AluBI	AGCT	3 cut(s)	46, 209, 221
AluI	AGCT	3 cut(s)	46, 209, 221
Alw26I	GTCTC	1 cut(s)	30
Aor13HI	TCCGGA	1 cut(s)	395
AoxI	GGCC	4 cut(s)	250, 286, 348, 774
ApeKI	GCWGC	3 cut(s)	209, 565, 626
Asp700I	GAANNNNTTC	1 cut(s)	373
Asp718I	GGTACC	1 cut(s)	453
AspS9I	GGNCC	2 cut(s)	329, 348
AsuII	TTCGAA	1 cut(s)	707
AvaII	GGWCC	1 cut(s)	329
BanI	GGYRCC	2 cut(s)	453, 640
BauI	CACGAG	1 cut(s)	214
BbsI	GAAGAC	2 cut(s)	234, 284
BbvI	GCAGC	3 cut(s)	196, 577, 638
BccI	CCATC	2 cut(s)	597, 689
BceAI	ACGGC	4 cut(s)	150, 240, 273, 422
BciVI	GTATCC	2 cut(s)	73, 524
BclI	TGATCA	1 cut(s)	103
BcoDI	GTCTC	1 cut(s)	30
BfuI	GTATCC	2 cut(s)	73, 524
BisI	GCNGC	4 cut(s)	210, 253, 566, 627
BlsI	GCNGC	4 cut(s)	211, 254, 567, 628
Bme18I	GGWCC	1 cut(s)	329
BmgT120I	GGNCC	2 cut(s)	329, 348
BmiI	GGNNCC	3 cut(s)	455, 517, 642
BmsI	GCATC	1 cut(s)	190
BpiI	GAAGAC	2 cut(s)	234, 284
Bpu14I	TTCGAA	1 cut(s)	707
BpuEI	CTTGAG	1 cut(s)	660
BsaJI	CCNNGG	1 cut(s)	280
BsaWI	WCCGGW	1 cut(s)	395
BsaXI	ACNNNNNCTCC	2 cut(s)	597, 627
Bsc4I	CCNNNNNNNGG	5 cut(s)	326, 338, 365, 449, 740
Bse3DI	GCAATG	1 cut(s)	102
BseAI	TCCGGA	1 cut(s)	395
BseDI	CCNNGG	1 cut(s)	280
BseGI	GGATG	1 cut(s)	32
BseLI	CCNNNNNNNGG	5 cut(s)	326, 338, 365, 449, 740
BseMI	GCAATG	1 cut(s)	102
BseMII	CTCAG	1 cut(s)	392
BseRI	GAGGAG	3 cut(s)	309, 720, 768
BseXI	GCAGC	3 cut(s)	196, 577, 638
BshFI	GGCC	4 cut(s)	252, 288, 350, 776
BshNI	GGYRCC	2 cut(s)	453, 640
BsiSI	CCGG	1 cut(s)	396
BslFI	GGGAC	1 cut(s)	137
BslI	CCNNNNNNNGG	5 cut(s)	326, 338, 365, 449, 740
BsmAI	GTCTC	1 cut(s)	30
BsmFI	GGGAC	1 cut(s)	137
BsnI	GGCC	4 cut(s)	252, 288, 350, 776
Bsp119I	TTCGAA	1 cut(s)	707
Bsp13I	TCCGGA	1 cut(s)	395
Bsp143I	GATC	2 cut(s)	103, 240
BspACI	CCGC	4 cut(s)	253, 462, 557, 575
BspANI	GGCC	4 cut(s)	252, 288, 350, 776
BspCNI	CTCAG	1 cut(s)	391
BspEI	TCCGGA	1 cut(s)	395
BspLI	GGNNCC	3 cut(s)	455, 517, 642
BspT104I	TTCGAA	1 cut(s)	707
BspT107I	GGYRCC	2 cut(s)	453, 640
BsrDI	GCAATG	1 cut(s)	102
BssECI	CCNNGG	1 cut(s)	280
BssMI	GATC	2 cut(s)	103, 240
BssSI	CACGAG	1 cut(s)	214
Bst2BI	CACGAG	1 cut(s)	214
Bst4CI	ACNGT	2 cut(s)	655, 748
BstBI	TTCGAA	1 cut(s)	707
BstC8I	GCNNGC	1 cut(s)	223
BstDEI	CTNAG	1 cut(s)	378
BstENI	CCTNNNNNAGG	2 cut(s)	324, 738
BstF5I	GGATG	1 cut(s)	32
BstKTI	GATC	2 cut(s)	106, 243
BstMAI	GTCTC	1 cut(s)	30
BstMBI	GATC	2 cut(s)	103, 240
BstMWI	GCNNNNNNNGC	5 cut(s)	209, 218, 470, 565, 574
BstNSI	RCATGY	2 cut(s)	365, 598
BstV1I	GCAGC	3 cut(s)	196, 577, 638
BstV2I	GAAGAC	2 cut(s)	234, 284
BsuI	GTATCC	2 cut(s)	73, 524
BsuRI	GGCC	4 cut(s)	252, 288, 350, 776
BtsCI	GGATG	1 cut(s)	32
BtsIMutI	CAGTG	2 cut(s)	386, 651
Cac8I	GCNNGC	1 cut(s)	223
Cfr13I	GGNCC	2 cut(s)	329, 348
Csp6I	GTAC	2 cut(s)	385, 454
CviAII	CATG	4 cut(s)	310, 362, 481, 595
CviQI	GTAC	2 cut(s)	385, 454
DdeI	CTNAG	1 cut(s)	378
DpnI	GATC	2 cut(s)	105, 242
DpnII	GATC	2 cut(s)	103, 240
EaeI	YGGCCR	2 cut(s)	250, 286
EciI	GGCGGA	1 cut(s)	451
Eco47I	GGWCC	1 cut(s)	329
EcoNI	CCTNNNNNAGG	2 cut(s)	324, 738
FaeI	CATG	4 cut(s)	313, 365, 484, 598
FaqI	GGGAC	1 cut(s)	137
FatI	CATG	4 cut(s)	309, 361, 480, 594
FbaI	TGATCA	1 cut(s)	103
Fnu4HI	GCNGC	4 cut(s)	210, 253, 566, 627
FokI	GGATG	1 cut(s)	39
Fsp4HI	GCNGC	4 cut(s)	210, 253, 566, 627
GluI	GCNGC	4 cut(s)	210, 253, 566, 627
HaeIII	GGCC	4 cut(s)	252, 288, 350, 776
HapII	CCGG	1 cut(s)	396
Hin1II	CATG	4 cut(s)	313, 365, 484, 598
HinfI	GANTC	2 cut(s)	230, 399
HpaII	CCGG	1 cut(s)	396
Hpy166II	GTNNAC	1 cut(s)	22
Hpy188I	TCNGA	4 cut(s)	35, 151, 240, 512
Hpy188III	TCNNGA	1 cut(s)	396
Hpy8I	GTNNAC	1 cut(s)	22
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	4 cut(s)	468, 496, 708, 766
HpyCH4III	ACNGT	2 cut(s)	655, 748
HpyCH4IV	ACGT	2 cut(s)	18, 468
HpyCH4V	TGCA	3 cut(s)	267, 539, 547
HpyF10VI	GCNNNNNNNGC	5 cut(s)	209, 218, 470, 565, 574
HpyF3I	CTNAG	1 cut(s)	378
HpySE526I	ACGT	2 cut(s)	18, 468
Hsp92II	CATG	4 cut(s)	313, 365, 484, 598
Kpn2I	TCCGGA	1 cut(s)	395
KpnI	GGTACC	1 cut(s)	457
Ksp22I	TGATCA	1 cut(s)	103
Kzo9I	GATC	2 cut(s)	103, 240
LpnPI	CCDG	4 cut(s)	331, 409, 422, 726
Lsp1109I	GCAGC	3 cut(s)	196, 577, 638
LweI	GCATC	1 cut(s)	190
MaeII	ACGT	2 cut(s)	18, 468
MaeIII	GTNAC	1 cut(s)	187
MalI	GATC	2 cut(s)	105, 242
MboI	GATC	2 cut(s)	103, 240
MboII	GAAGA	3 cut(s)	239, 284, 781
MlyI	GAGTC	1 cut(s)	224
MmeI	TCCRAC	5 cut(s)	174, 346, 481, 490, 730
MroI	TCCGGA	1 cut(s)	395
MroXI	GAANNNNTTC	1 cut(s)	373
MslI	CAYNNNNRTG	1 cut(s)	597
MspI	CCGG	1 cut(s)	396
MwoI	GCNNNNNNNGC	5 cut(s)	209, 218, 470, 565, 574
NdeII	GATC	2 cut(s)	103, 240
NlaIII	CATG	4 cut(s)	313, 365, 484, 598
NlaIV	GGNNCC	3 cut(s)	455, 517, 642
NmuCI	GTSAC	1 cut(s)	187
NspI	RCATGY	2 cut(s)	365, 598
NspV	TTCGAA	1 cut(s)	707
PciI	ACATGT	2 cut(s)	361, 594
PdmI	GAANNNNTTC	1 cut(s)	373
PfeI	GAWTC	1 cut(s)	399
PflMI	CCANNNNNTGG	2 cut(s)	338, 365
PkrI	GCNGC	4 cut(s)	211, 254, 567, 628
PleI	GAGTC	1 cut(s)	224
PpsI	GAGTC	1 cut(s)	224
PscI	ACATGT	2 cut(s)	361, 594
PspN4I	GGNNCC	3 cut(s)	455, 517, 642
PspPI	GGNCC	2 cut(s)	329, 348
RsaI	GTAC	2 cut(s)	386, 455
RsaNI	GTAC	2 cut(s)	385, 454
RseI	CAYNNNNRTG	1 cut(s)	597
SatI	GCNGC	4 cut(s)	210, 253, 566, 627
Sau3AI	GATC	2 cut(s)	103, 240
Sau96I	GGNCC	2 cut(s)	329, 348
SchI	GAGTC	1 cut(s)	224
SfaNI	GCATC	1 cut(s)	190
SfuI	TTCGAA	1 cut(s)	707
SinI	GGWCC	1 cut(s)	329
SmiMI	CAYNNNNRTG	1 cut(s)	597
SmlI	CTYRAG	1 cut(s)	675
SmoI	CTYRAG	1 cut(s)	675
SsiI	CCGC	4 cut(s)	253, 462, 557, 575
SspI	AATATT	1 cut(s)	581
TaaI	ACNGT	2 cut(s)	655, 748
TaiI	ACGT	2 cut(s)	21, 471
TaqI	TCGA	1 cut(s)	707
TauI	GCSGC	1 cut(s)	255
TfiI	GAWTC	1 cut(s)	399
TscAI	CASTG	2 cut(s)	386, 658
TseFI	GTSAC	1 cut(s)	187
TseI	GCWGC	3 cut(s)	209, 565, 626
Tsp45I	GTSAC	1 cut(s)	187
TspDTI	ATGAA	3 cut(s)	100, 539, 690
TspGWI	ACGGA	2 cut(s)	39, 543
TspRI	CASTG	2 cut(s)	386, 658
Van91I	CCANNNNNTGG	2 cut(s)	338, 365
VpaK11BI	GGWCC	1 cut(s)	329
XagI	CCTNNNNNAGG	2 cut(s)	324, 738
XceI	RCATGY	2 cut(s)	365, 598
XcmI	CCANNNNNNNNNTGG	1 cut(s)	596
XmnI	GAANNNNTTC	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.