Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0006332

Physical Location & Seq

Genomic Coordinates Reverse (-)

42114286 .. 42117196

Gene Structure 2911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG284900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGACAATGAGCAACAACGTTAACCAGTTCGGCGACACGACATTGACCAAAGTCTTCGTCGGAGGGCTGGCCTGGGAGACTCCCAAGGAGGCTCTGAGAGAGCACTTCGACAAGTACGGTGAGATCTTGGAGGCCGTCATCATCTCCGATAAGCTCACCGGCAGATCCAAGGGCTACGGCTTCGTGACGTTCAAGGAGGCTGAAGCGGCTAAGAAGGCTTGCGAGGACGCCACGCCGGTCATCAACGGCCGCCGTGCCAACTGCAACCTCGCCTCGCTCGGGGCTCGCCGCCCTAGGTCGGCTTCCACCACCACTCCTCCTCCTCAACGAGTATCAAATGGTGGAGGACAAAGGTCTATGTCACCGGCGCCGGCGCCGGCACCTACAAATCACGTGCAATGGTACTACCCGGCAGGGACTCCAGCAGCAGCTTCTGTACCATTTCATCACCAGCATCATCAGGCTGTTCCATTCTATGGATACTCCCCAACCTACATTGCAACTGATATGGGCTACAATCACAAGCTGGGATACAGTACTGGTGGGAGTTACATGAATGGGCATTACTCTCCTCAAGTGTACCATAGCCACCAGCCTATGGTTGGTCCAAACACATTGATGCCAACGTACCCTCTTTACCATTATCACCATCAATCGCATACAATGGGGTTACCTGCCCAATTCTTCCCCCCAACCACCGCAGGTCACGTTGCAACGGTCCCGGCAATCATGTCAAAACCGGCCTCAATTGCTCCCAATAACACAGTGTGCTTGGCTGTGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010029 GO:0010033 GO:0010035 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0097159 GO:0097305 GO:1900140 GO:1901363 GO:1901700 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

261

Amino Acids

28.3

Weight (kDa)

9.04

Isoelectric Point (pI)

56.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	18 - 75	3.2e-17	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54770 AT3G54770 AT3G54770
fragaria_vesca	FvH4_7g20260 FvH4_7g20260 FvH4_7g20260 FvH4_7g20260
malus_domestica	MD01G1112300.v1.1 MD07G1180100.v1.1
prunus_persica	Prupe.2G219600_v2.0.a1 Prupe.2G219600_v2.0.a1 Prupe.2G219600_v2.0.a1
pyrus_communis	pycom01g14080 pycom07g17340
rosa_chinensis	RchiOBHm_Chr1g0364201
rosa_laevigata	RLG00000027506
rosa_multiflora	Rmu_sc0000071.1_g000004
rosa_roxburghii	Rroxscaffold_4G00292570
rosa_rugosa	Rorug01G0314600.1 Rorug01G0314700 Rorug01G0314700 Rorug01G0314800
rosa_samantha	Rh1AG322100 Rh1BG284900 Rh1CG301400 Rh1DG316300
rosa_wichuraiana	Rw1G028530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	682, 692
AccB1I	GGYRCC	3 cut(s)	367, 373, 379
AccB7I	CCANNNNNTGG	2 cut(s)	476, 598
AciI	CCGC	4 cut(s)	206, 250, 289, 699
AclI	AACGTT	1 cut(s)	18
AclWI	GGATC	1 cut(s)	159
AcoI	YGGCCR	1 cut(s)	247
AcuI	CTGAAG	1 cut(s)	222
AcvI	CACGTG	1 cut(s)	394
AcyI	GRCGYC	3 cut(s)	228, 368, 374
AdeI	CACNNNGTG	1 cut(s)	768
AfaI	GTAC	6 cut(s)	116, 404, 438, 538, 581, 629
AfiI	CCNNNNNNNGG	5 cut(s)	279, 298, 476, 598, 602
AgsI	TTSAA	1 cut(s)	193
AjnI	CCWGG	1 cut(s)	71
AluBI	AGCT	3 cut(s)	154, 431, 526
AluI	AGCT	3 cut(s)	154, 431, 526
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	1 cut(s)	71
AlwI	GGATC	1 cut(s)	159
AlwNI	CAGNNNCTG	1 cut(s)	434
Ama87I	CYCGRG	1 cut(s)	278
AoxI	GGCC	4 cut(s)	69, 132, 247, 741
ApeKI	GCWGC	2 cut(s)	425, 428
ArsI	GACNNNNNNTTYG	2 cut(s)	42, 74
AspA2I	CCTAGG	1 cut(s)	293
AspLEI	GCGC	2 cut(s)	370, 376
AspS9I	GGNCC	2 cut(s)	605, 718
AsuC2I	CCSGG	2 cut(s)	410, 722
AsuHPI	GGTGA	5 cut(s)	131, 148, 354, 440, 638
AvaI	CYCGRG	1 cut(s)	278
AvaII	GGWCC	2 cut(s)	605, 718
AvrII	CCTAGG	1 cut(s)	293
BanI	GGYRCC	3 cut(s)	367, 373, 379
BanII	GRGCYC	1 cut(s)	286
BbrPI	CACGTG	1 cut(s)	394
BbsI	GAAGAC	1 cut(s)	46
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	2 cut(s)	437, 440
BccI	CCATC	1 cut(s)	657
BceAI	ACGGC	4 cut(s)	119, 193, 237, 262
BciT130I	CCWGG	1 cut(s)	73
BciVI	GTATCC	2 cut(s)	473, 524
BcnI	CCSGG	2 cut(s)	410, 722
BcoDI	GTCTC	1 cut(s)	71
BfaI	CTAG	1 cut(s)	294
BfoI	RGCGCY	2 cut(s)	371, 377
BfuAI	ACCTGC	2 cut(s)	682, 692
BfuI	GTATCC	2 cut(s)	473, 524
BglII	AGATCT	1 cut(s)	123
BisI	GCNGC	5 cut(s)	207, 250, 289, 426, 429
BlnI	CCTAGG	1 cut(s)	293
BlsI	GCNGC	5 cut(s)	208, 251, 290, 427, 430
BmcAI	AGTACT	1 cut(s)	538
Bme1390I	CCNGG	3 cut(s)	73, 410, 722
Bme18I	GGWCC	2 cut(s)	605, 718
BmeT110I	CYCGRG	1 cut(s)	278
BmgT120I	GGNCC	2 cut(s)	605, 718
BmiI	GGNNCC	4 cut(s)	369, 375, 381, 720
BmrFI	CCNGG	3 cut(s)	73, 410, 722
BmsI	GCATC	2 cut(s)	463, 609
BoxI	GACNNNNGTC	2 cut(s)	50, 352
BpiI	GAAGAC	1 cut(s)	46
BpmI	CTGGAG	1 cut(s)	405
BpuEI	CTTGAG	1 cut(s)	558
BpuMI	CCSGG	2 cut(s)	410, 722
BsaAI	YACGTR	1 cut(s)	394
BsaHI	GRCGYC	3 cut(s)	228, 368, 374
BsaJI	CCNNGG	4 cut(s)	72, 84, 168, 293
BsaXI	ACNNNNNCTCC	6 cut(s)	298, 301, 304, 328, 331, 334
Bsc4I	CCNNNNNNNGG	5 cut(s)	279, 298, 476, 598, 602
Bse118I	RCCGGY	6 cut(s)	158, 235, 364, 370, 376, 739
Bse1I	ACTGG	2 cut(s)	25, 544
Bse3DI	GCAATG	2 cut(s)	404, 495
BseBI	CCWGG	1 cut(s)	73
BseDI	CCNNGG	4 cut(s)	72, 84, 168, 293
BseLI	CCNNNNNNNGG	5 cut(s)	279, 298, 476, 598, 602
BseMI	GCAATG	2 cut(s)	404, 495
BseMII	CTCAG	1 cut(s)	86
BseNI	ACTGG	2 cut(s)	25, 544
BseRI	GAGGAG	4 cut(s)	306, 309, 312, 561
BseX3I	CGGCCG	1 cut(s)	247
BseXI	GCAGC	2 cut(s)	437, 440
BseYI	CCCAGC	1 cut(s)	526
Bsh1285I	CGRYCG	1 cut(s)	250
BshFI	GGCC	4 cut(s)	71, 134, 249, 743
BshNI	GGYRCC	3 cut(s)	367, 373, 379
BsiEI	CGRYCG	1 cut(s)	250
BsiHKAI	GWGCWC	1 cut(s)	105
BsiHKCI	CYCGRG	1 cut(s)	278
BsiSI	CCGG	8 cut(s)	159, 236, 365, 371, 377, 410, 722, 740
BslFI	GGGAC	2 cut(s)	430, 704
BslI	CCNNNNNNNGG	5 cut(s)	279, 298, 476, 598, 602
BsmAI	GTCTC	1 cut(s)	71
BsmFI	GGGAC	2 cut(s)	430, 704
BsnI	GGCC	4 cut(s)	71, 134, 249, 743
BsoBI	CYCGRG	1 cut(s)	278
Bsp1286I	GDGCHC	2 cut(s)	105, 286
Bsp143I	GATC	2 cut(s)	123, 164
BspACI	CCGC	4 cut(s)	206, 250, 289, 699
BspANI	GGCC	4 cut(s)	71, 134, 249, 743
BspCNI	CTCAG	1 cut(s)	87
BspLI	GGNNCC	4 cut(s)	369, 375, 381, 720
BspMI	ACCTGC	2 cut(s)	682, 692
BspPI	GGATC	1 cut(s)	159
BspT107I	GGYRCC	3 cut(s)	367, 373, 379
BsrDI	GCAATG	2 cut(s)	404, 495
BsrFI	RCCGGY	6 cut(s)	158, 235, 364, 370, 376, 739
BsrI	ACTGG	2 cut(s)	25, 544
BssAI	RCCGGY	6 cut(s)	158, 235, 364, 370, 376, 739
BssECI	CCNNGG	4 cut(s)	72, 84, 168, 293
BssMI	GATC	2 cut(s)	123, 164
BssNI	GRCGYC	3 cut(s)	228, 368, 374
BssT1I	CCWWGG	3 cut(s)	84, 168, 293
Bst2UI	CCWGG	1 cut(s)	73
Bst4CI	ACNGT	4 cut(s)	119, 536, 718, 766
BstACI	GRCGYC	3 cut(s)	228, 368, 374
BstBAI	YACGTR	1 cut(s)	394
BstC8I	GCNNGC	5 cut(s)	69, 220, 286, 372, 378
BstDEI	CTNAG	2 cut(s)	95, 210
BstEII	GGTNACC	1 cut(s)	669
BstH2I	RGCGCY	2 cut(s)	371, 377
BstHHI	GCGC	2 cut(s)	370, 376
BstKTI	GATC	2 cut(s)	126, 167
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	2 cut(s)	123, 164
BstMCI	CGRYCG	1 cut(s)	250
BstMWI	GCNNNNNNNGC	3 cut(s)	206, 215, 749
BstNI	CCWGG	1 cut(s)	73
BstPAI	GACNNNNGTC	2 cut(s)	50, 352
BstPI	GGTNACC	1 cut(s)	669
BstSCI	CCNGG	3 cut(s)	71, 408, 720
BstV1I	GCAGC	2 cut(s)	437, 440
BstV2I	GAAGAC	1 cut(s)	46
BstX2I	RGATCY	2 cut(s)	123, 164
BstYI	RGATCY	2 cut(s)	123, 164
BstZI	CGGCCG	1 cut(s)	247
BsuI	GTATCC	2 cut(s)	473, 524
BsuRI	GGCC	4 cut(s)	71, 134, 249, 743
BtsIMutI	CAGTG	1 cut(s)	771
BveI	ACCTGC	2 cut(s)	682, 692
Cac8I	GCNNGC	5 cut(s)	69, 220, 286, 372, 378
CaiI	CAGNNNCTG	1 cut(s)	434
CfoI	GCGC	2 cut(s)	370, 376
Cfr10I	RCCGGY	6 cut(s)	158, 235, 364, 370, 376, 739
Cfr13I	GGNCC	2 cut(s)	605, 718
CseI	GACGC	1 cut(s)	236
Csp6I	GTAC	6 cut(s)	115, 403, 437, 537, 580, 628
CviAII	CATG	2 cut(s)	553, 730
CviQI	GTAC	6 cut(s)	115, 403, 437, 537, 580, 628
DdeI	CTNAG	2 cut(s)	95, 210
DinI	GGCGCC	2 cut(s)	369, 375
DpnI	GATC	2 cut(s)	125, 166
DpnII	GATC	2 cut(s)	123, 164
DraIII	CACNNNGTG	1 cut(s)	768
EaeI	YGGCCR	1 cut(s)	247
EagI	CGGCCG	1 cut(s)	247
EclXI	CGGCCG	1 cut(s)	247
Eco130I	CCWWGG	3 cut(s)	84, 168, 293
Eco24I	GRGCYC	1 cut(s)	286
Eco47I	GGWCC	2 cut(s)	605, 718
Eco52I	CGGCCG	1 cut(s)	247
Eco57I	CTGAAG	1 cut(s)	222
Eco72I	CACGTG	1 cut(s)	394
Eco88I	CYCGRG	1 cut(s)	278
Eco91I	GGTNACC	1 cut(s)	669
EcoO65I	GGTNACC	1 cut(s)	669
EcoRII	CCWGG	1 cut(s)	71
EcoT14I	CCWWGG	3 cut(s)	84, 168, 293
EcoT38I	GRGCYC	1 cut(s)	286
EgeI	GGCGCC	2 cut(s)	369, 375
EheI	GGCGCC	2 cut(s)	369, 375
ErhI	CCWWGG	3 cut(s)	84, 168, 293
FaeI	CATG	2 cut(s)	556, 733
FaiI	YATR	8 cut(s)	359, 477, 509, 554, 585, 599, 660, 731
FaqI	GGGAC	2 cut(s)	430, 704
FatI	CATG	2 cut(s)	552, 729
Fnu4HI	GCNGC	5 cut(s)	207, 250, 289, 426, 429
FriOI	GRGCYC	1 cut(s)	286
Fsp4HI	GCNGC	5 cut(s)	207, 250, 289, 426, 429
FspBI	CTAG	1 cut(s)	294
GlaI	GCGC	2 cut(s)	369, 375
GluI	GCNGC	5 cut(s)	207, 250, 289, 426, 429
GsaI	CCCAGC	1 cut(s)	530
GsuI	CTGGAG	1 cut(s)	405
HaeII	RGCGCY	2 cut(s)	371, 377
HaeIII	GGCC	4 cut(s)	71, 134, 249, 743
HapII	CCGG	8 cut(s)	159, 236, 365, 371, 377, 410, 722, 740
HgaI	GACGC	1 cut(s)	236
HhaI	GCGC	2 cut(s)	370, 376
Hin1I	GRCGYC	3 cut(s)	228, 368, 374
Hin1II	CATG	2 cut(s)	556, 733
Hin6I	GCGC	2 cut(s)	368, 374
HinP1I	GCGC	2 cut(s)	368, 374
HincII	GTYRAC	1 cut(s)	22
HindII	GTYRAC	1 cut(s)	22
HinfI	GANTC	2 cut(s)	79, 418
HpaI	GTTAAC	1 cut(s)	22
HpaII	CCGG	8 cut(s)	159, 236, 365, 371, 377, 410, 722, 740
HphI	GGTGA	5 cut(s)	131, 148, 354, 440, 638
Hpy166II	GTNNAC	2 cut(s)	22, 580
Hpy188I	TCNGA	3 cut(s)	62, 96, 148
Hpy188III	TCNNGA	1 cut(s)	184
Hpy8I	GTNNAC	2 cut(s)	22, 580
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	1 cut(s)	208
HpyCH4III	ACNGT	4 cut(s)	119, 536, 718, 766
HpyCH4IV	ACGT	5 cut(s)	18, 188, 393, 626, 708
HpyCH4V	TGCA	4 cut(s)	264, 397, 500, 713
HpyF10VI	GCNNNNNNNGC	3 cut(s)	206, 215, 749
HpyF3I	CTNAG	2 cut(s)	95, 210
HpySE526I	ACGT	5 cut(s)	18, 188, 393, 626, 708
Hsp92I	GRCGYC	3 cut(s)	228, 368, 374
Hsp92II	CATG	2 cut(s)	556, 733
HspAI	GCGC	2 cut(s)	368, 374
KasI	GGCGCC	2 cut(s)	367, 373
KroI	GCCGGC	2 cut(s)	370, 376
KroNI	GCCGGC	2 cut(s)	372, 378
KspAI	GTTAAC	1 cut(s)	22
Kzo9I	GATC	2 cut(s)	123, 164
LmnI	GCTCC	1 cut(s)	757
Lsp1109I	GCAGC	2 cut(s)	437, 440
LweI	GCATC	2 cut(s)	463, 609
MaeI	CTAG	1 cut(s)	294
MaeII	ACGT	5 cut(s)	18, 188, 393, 626, 708
MaeIII	GTNAC	5 cut(s)	184, 360, 548, 669, 704
MalI	GATC	2 cut(s)	125, 166
MboI	GATC	2 cut(s)	123, 164
MboII	GAAGA	2 cut(s)	46, 676
MfeI	CAATTG	1 cut(s)	747
MflI	RGATCY	2 cut(s)	123, 164
MhlI	GDGCHC	2 cut(s)	105, 286
MluCI	AATT	2 cut(s)	680, 747
Mly113I	GGCGCC	2 cut(s)	368, 374
MlyI	GAGTC	2 cut(s)	73, 412
MmeI	TCCRAC	1 cut(s)	40
MreI	CGCCGGCG	1 cut(s)	370
MroNI	GCCGGC	2 cut(s)	370, 376
MseI	TTAA	1 cut(s)	21
MslI	CAYNNNNRTG	1 cut(s)	617
MspI	CCGG	8 cut(s)	159, 236, 365, 371, 377, 410, 722, 740
MspR9I	CCNGG	3 cut(s)	73, 410, 722
MunI	CAATTG	1 cut(s)	747
MvaI	CCWGG	1 cut(s)	73
MwoI	GCNNNNNNNGC	3 cut(s)	206, 215, 749
NaeI	GCCGGC	2 cut(s)	372, 378
NarI	GGCGCC	2 cut(s)	368, 374
NciI	CCSGG	2 cut(s)	410, 722
NdeII	GATC	2 cut(s)	123, 164
NgoMIV	GCCGGC	2 cut(s)	370, 376
NlaIII	CATG	2 cut(s)	556, 733
NlaIV	GGNNCC	4 cut(s)	369, 375, 381, 720
NmuCI	GTSAC	3 cut(s)	184, 360, 704
PdiI	GCCGGC	2 cut(s)	372, 378
PflMI	CCANNNNNTGG	2 cut(s)	476, 598
PkrI	GCNGC	5 cut(s)	208, 251, 290, 427, 430
PleI	GAGTC	2 cut(s)	73, 412
PluTI	GGCGCC	2 cut(s)	371, 377
PmaCI	CACGTG	1 cut(s)	394
PmlI	CACGTG	1 cut(s)	394
PpsI	GAGTC	2 cut(s)	73, 412
Ppu21I	YACGTR	1 cut(s)	394
PshAI	GACNNNNGTC	2 cut(s)	50, 352
Psp1406I	AACGTT	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	71
PspCI	CACGTG	1 cut(s)	394
PspEI	GGTNACC	1 cut(s)	669
PspFI	CCCAGC	1 cut(s)	526
PspGI	CCWGG	1 cut(s)	71
PspN4I	GGNNCC	4 cut(s)	369, 375, 381, 720
PspPI	GGNCC	2 cut(s)	605, 718
PstNI	CAGNNNCTG	1 cut(s)	434
PsuI	RGATCY	2 cut(s)	123, 164
RsaI	GTAC	6 cut(s)	116, 404, 438, 538, 581, 629
RsaNI	GTAC	6 cut(s)	115, 403, 437, 537, 580, 628
RseI	CAYNNNNRTG	1 cut(s)	617
SaqAI	TTAA	1 cut(s)	21
SatI	GCNGC	5 cut(s)	207, 250, 289, 426, 429
Sau3AI	GATC	2 cut(s)	123, 164
Sau96I	GGNCC	2 cut(s)	605, 718
ScaI	AGTACT	1 cut(s)	538
SchI	GAGTC	2 cut(s)	73, 412
ScrFI	CCNGG	3 cut(s)	73, 410, 722
SduI	GDGCHC	2 cut(s)	105, 286
SfaNI	GCATC	2 cut(s)	463, 609
SfoI	GGCGCC	2 cut(s)	369, 375
SgrAI	CRCCGGYG	2 cut(s)	364, 370
SinI	GGWCC	2 cut(s)	605, 718
SmiMI	CAYNNNNRTG	1 cut(s)	617
SmlI	CTYRAG	1 cut(s)	573
SmoI	CTYRAG	1 cut(s)	573
Sse9I	AATT	2 cut(s)	680, 747
SsiI	CCGC	4 cut(s)	206, 250, 289, 699
SspDI	GGCGCC	2 cut(s)	367, 373
SspMI	CTAG	1 cut(s)	294
StyD4I	CCNGG	3 cut(s)	71, 408, 720
StyI	CCWWGG	3 cut(s)	84, 168, 293
TaaI	ACNGT	4 cut(s)	119, 536, 718, 766
TaiI	ACGT	5 cut(s)	21, 191, 396, 629, 711
TaqI	TCGA	1 cut(s)	108
TasI	AATT	2 cut(s)	680, 747
TatI	WGTACW	1 cut(s)	536
TauI	GCSGC	3 cut(s)	209, 252, 291
Tru1I	TTAA	1 cut(s)	21
Tru9I	TTAA	1 cut(s)	21
TscAI	CASTG	1 cut(s)	771
TseFI	GTSAC	3 cut(s)	184, 360, 704
TseI	GCWGC	2 cut(s)	425, 428
Tsp45I	GTSAC	3 cut(s)	184, 360, 704
TspDTI	ATGAA	2 cut(s)	434, 569
TspRI	CASTG	1 cut(s)	771
Van91I	CCANNNNNTGG	2 cut(s)	476, 598
VpaK11BI	GGWCC	2 cut(s)	605, 718
XcmI	CCANNNNNNNNNTGG	1 cut(s)	599
XmaJI	CCTAGG	1 cut(s)	293
XspI	CTAG	1 cut(s)	294
ZrmI	AGTACT	1 cut(s)	538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.