Rw1G028530

RNA-binding protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
56214795 .. 56216903
2109 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G028530.1

Sequence Viewer

Length: 786 bp
ATGACAATGAGCAACAACGTTAACCAGTTCGGCGACACGACATTGACCAAAGTCTTCGTCGGAGGGCTGGCCTGGGAGACTCCCAAGGAGGCTCTGAGAGAGCACTTCGACAAGTACGGTGAGATCTTGGAGGCCGTCATCATCTCCGATAAGCTCACCGGCCGATCCAAGGGCTACGGCTTCGTGACGTTCAAGGAGGCTGAAGCGGCTAAGAAGGCTTGCGAGGACGCCACGCCGGTCATCAACGGCCGCCGTGCCAACTGCAACCTGGCCTCGCTCGGGGCTCGCCGCCCTAGGTCGGCTTCCACCACCACTCCTCCTCCTCAACGAGTATCAAATGGTGGAGGACCAAGGTCTATGTCGCCGGCGCCGGCGCCGGCACCTGCAAATCACGTGCAATGGTACTACCCGGCAGGGACTCCAGCAGCAGCTTCTGTACCATTCCATCACCAGCACCATCAGGCTGTTCCATTCTATGGATACTCCCCAACCTACATTGCAACTGATATGGGCTACAATCACAAGCTGGGATACAGTACTGGTGGGAGTTACATGAATGGGCATTACTCTCCTCAAGTGTACCATAGCCACCAGCCTATGGTTGGTCCAAACACATTGATGCCAATGTACCCTCTTTACCATTATCACCATCAATCACATACAATGGGGTTACCTGCCCAATTCTTCCCCCCAACCACCACAGGTCACGTCGCAACGGTCCCGGCAATCATGTCAAAACCGGCCTCAATTGCTCCCAATAACACAGTGTGCTTGGCTGTGGAATAG

Protein Analysis

261

Amino Acids

28.3

Weight (kDa)

9.04

Isoelectric Point (pI)

57.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 18 - 75 3.2e-17 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 391
Acc36I ACCTGC 2 cut(s) 391, 682
AccB1I GGYRCC 3 cut(s) 367, 373, 379
AccB7I CCANNNNNTGG 2 cut(s) 476, 598
AciI CCGC 3 cut(s) 206, 250, 289
AclI AACGTT 1 cut(s) 18
AclWI GGATC 1 cut(s) 159
AcoI YGGCCR 2 cut(s) 160, 247
AcuI CTGAAG 1 cut(s) 222
AcvI CACGTG 1 cut(s) 394
AcyI GRCGYC 3 cut(s) 228, 368, 374
AdeI CACNNNGTG 1 cut(s) 768
AfaI GTAC 6 cut(s) 116, 404, 438, 538, 581, 629
AfiI CCNNNNNNNGG 6 cut(s) 169, 279, 298, 476, 598, 602
AgsI TTSAA 1 cut(s) 193
AjiI CACGTC 1 cut(s) 709
AjnI CCWGG 2 cut(s) 71, 267
AluBI AGCT 3 cut(s) 154, 431, 526
AluI AGCT 3 cut(s) 154, 431, 526
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 1 cut(s) 71
AlwI GGATC 1 cut(s) 159
AlwNI CAGNNNCTG 1 cut(s) 434
Ama87I CYCGRG 1 cut(s) 278
AoxI GGCC 6 cut(s) 69, 132, 160, 247, 270, 741
ApeKI GCWGC 2 cut(s) 425, 428
ArsI GACNNNNNNTTYG 2 cut(s) 42, 74
AspA2I CCTAGG 1 cut(s) 293
AspLEI GCGC 2 cut(s) 370, 376
AspS9I GGNCC 3 cut(s) 347, 605, 718
AsuC2I CCSGG 2 cut(s) 410, 722
AsuHPI GGTGA 4 cut(s) 131, 148, 440, 638
AvaI CYCGRG 1 cut(s) 278
AvaII GGWCC 3 cut(s) 347, 605, 718
AvrII CCTAGG 1 cut(s) 293
BanI GGYRCC 3 cut(s) 367, 373, 379
BanII GRGCYC 1 cut(s) 286
BbrPI CACGTG 1 cut(s) 394
BbsI GAAGAC 1 cut(s) 46
Bbv12I GWGCWC 1 cut(s) 105
BbvI GCAGC 2 cut(s) 437, 440
BccI CCATC 3 cut(s) 453, 465, 657
BceAI ACGGC 4 cut(s) 119, 193, 237, 262
BciT130I CCWGG 2 cut(s) 73, 269
BciVI GTATCC 2 cut(s) 473, 524
BcnI CCSGG 2 cut(s) 410, 722
BcoDI GTCTC 1 cut(s) 71
BfaI CTAG 1 cut(s) 294
BfoI RGCGCY 2 cut(s) 371, 377
BfuAI ACCTGC 2 cut(s) 391, 682
BfuI GTATCC 2 cut(s) 473, 524
BglII AGATCT 1 cut(s) 123
BisI GCNGC 5 cut(s) 207, 250, 289, 426, 429
BlnI CCTAGG 1 cut(s) 293
BlsI GCNGC 5 cut(s) 208, 251, 290, 427, 430
BmcAI AGTACT 1 cut(s) 538
Bme1390I CCNGG 4 cut(s) 73, 269, 410, 722
Bme18I GGWCC 3 cut(s) 347, 605, 718
BmeT110I CYCGRG 1 cut(s) 278
BmgBI CACGTC 1 cut(s) 709
BmgT120I GGNCC 3 cut(s) 347, 605, 718
BmiI GGNNCC 4 cut(s) 369, 375, 381, 720
BmrFI CCNGG 4 cut(s) 73, 269, 410, 722
BmsI GCATC 1 cut(s) 609
BoxI GACNNNNGTC 2 cut(s) 50, 352
BpiI GAAGAC 1 cut(s) 46
BpmI CTGGAG 1 cut(s) 405
BpuEI CTTGAG 1 cut(s) 558
BpuMI CCSGG 2 cut(s) 410, 722
BsaAI YACGTR 1 cut(s) 394
BsaHI GRCGYC 3 cut(s) 228, 368, 374
BsaJI CCNNGG 5 cut(s) 72, 84, 168, 293, 350
BsaXI ACNNNNNCTCC 6 cut(s) 298, 301, 304, 328, 331, 334
Bsc4I CCNNNNNNNGG 6 cut(s) 169, 279, 298, 476, 598, 602
Bse118I RCCGGY 6 cut(s) 158, 235, 364, 370, 376, 739
Bse1I ACTGG 2 cut(s) 25, 544
Bse3DI GCAATG 2 cut(s) 404, 495
BseBI CCWGG 2 cut(s) 73, 269
BseDI CCNNGG 5 cut(s) 72, 84, 168, 293, 350
BseLI CCNNNNNNNGG 6 cut(s) 169, 279, 298, 476, 598, 602
BseMI GCAATG 2 cut(s) 404, 495
BseMII CTCAG 1 cut(s) 86
BseNI ACTGG 2 cut(s) 25, 544
BseRI GAGGAG 4 cut(s) 306, 309, 312, 561
BseX3I CGGCCG 2 cut(s) 160, 247
BseXI GCAGC 2 cut(s) 437, 440
BseYI CCCAGC 1 cut(s) 526
Bsh1285I CGRYCG 2 cut(s) 163, 250
BshFI GGCC 6 cut(s) 71, 134, 162, 249, 272, 743
BshNI GGYRCC 3 cut(s) 367, 373, 379
BsiEI CGRYCG 2 cut(s) 163, 250
BsiHKAI GWGCWC 1 cut(s) 105
BsiHKCI CYCGRG 1 cut(s) 278
BsiSI CCGG 8 cut(s) 159, 236, 365, 371, 377, 410, 722, 740
BslFI GGGAC 2 cut(s) 430, 704
BslI CCNNNNNNNGG 6 cut(s) 169, 279, 298, 476, 598, 602
BsmAI GTCTC 1 cut(s) 71
BsmFI GGGAC 2 cut(s) 430, 704
BsnI GGCC 6 cut(s) 71, 134, 162, 249, 272, 743
BsoBI CYCGRG 1 cut(s) 278
Bsp1286I GDGCHC 2 cut(s) 105, 286
Bsp143I GATC 2 cut(s) 123, 164
BspACI CCGC 3 cut(s) 206, 250, 289
BspANI GGCC 6 cut(s) 71, 134, 162, 249, 272, 743
BspCNI CTCAG 1 cut(s) 87
BspLI GGNNCC 4 cut(s) 369, 375, 381, 720
BspMI ACCTGC 2 cut(s) 391, 682
BspPI GGATC 1 cut(s) 159
BspT107I GGYRCC 3 cut(s) 367, 373, 379
BsrDI GCAATG 2 cut(s) 404, 495
BsrFI RCCGGY 6 cut(s) 158, 235, 364, 370, 376, 739
BsrI ACTGG 2 cut(s) 25, 544
BssAI RCCGGY 6 cut(s) 158, 235, 364, 370, 376, 739
BssECI CCNNGG 5 cut(s) 72, 84, 168, 293, 350
BssMI GATC 2 cut(s) 123, 164
BssNI GRCGYC 3 cut(s) 228, 368, 374
BssT1I CCWWGG 4 cut(s) 84, 168, 293, 350
Bst2UI CCWGG 2 cut(s) 73, 269
Bst4CI ACNGT 4 cut(s) 119, 536, 718, 766
BstACI GRCGYC 3 cut(s) 228, 368, 374
BstBAI YACGTR 1 cut(s) 394
BstC8I GCNNGC 6 cut(s) 69, 220, 286, 366, 372, 378
BstDEI CTNAG 2 cut(s) 95, 210
BstEII GGTNACC 1 cut(s) 669
BstH2I RGCGCY 2 cut(s) 371, 377
BstHHI GCGC 2 cut(s) 370, 376
BstKTI GATC 2 cut(s) 126, 167
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 2 cut(s) 123, 164
BstMCI CGRYCG 2 cut(s) 163, 250
BstMWI GCNNNNNNNGC 3 cut(s) 206, 215, 749
BstNI CCWGG 2 cut(s) 73, 269
BstPAI GACNNNNGTC 2 cut(s) 50, 352
BstPI GGTNACC 1 cut(s) 669
BstSCI CCNGG 4 cut(s) 71, 267, 408, 720
BstV1I GCAGC 2 cut(s) 437, 440
BstV2I GAAGAC 1 cut(s) 46
BstX2I RGATCY 1 cut(s) 123
BstYI RGATCY 1 cut(s) 123
BstZI CGGCCG 2 cut(s) 160, 247
BsuI GTATCC 2 cut(s) 473, 524
BsuRI GGCC 6 cut(s) 71, 134, 162, 249, 272, 743
BtrI CACGTC 1 cut(s) 709
BtsIMutI CAGTG 1 cut(s) 771
BveI ACCTGC 2 cut(s) 391, 682
Cac8I GCNNGC 6 cut(s) 69, 220, 286, 366, 372, 378
CaiI CAGNNNCTG 1 cut(s) 434
CfoI GCGC 2 cut(s) 370, 376
Cfr10I RCCGGY 6 cut(s) 158, 235, 364, 370, 376, 739
Cfr13I GGNCC 3 cut(s) 347, 605, 718
CseI GACGC 1 cut(s) 236
Csp6I GTAC 6 cut(s) 115, 403, 437, 537, 580, 628
CviAII CATG 2 cut(s) 553, 730
CviQI GTAC 6 cut(s) 115, 403, 437, 537, 580, 628
DdeI CTNAG 2 cut(s) 95, 210
DinI GGCGCC 2 cut(s) 369, 375
DpnI GATC 2 cut(s) 125, 166
DpnII GATC 2 cut(s) 123, 164
DraIII CACNNNGTG 1 cut(s) 768
EaeI YGGCCR 2 cut(s) 160, 247
EagI CGGCCG 2 cut(s) 160, 247
EclXI CGGCCG 2 cut(s) 160, 247
Eco130I CCWWGG 4 cut(s) 84, 168, 293, 350
Eco24I GRGCYC 1 cut(s) 286
Eco47I GGWCC 3 cut(s) 347, 605, 718
Eco52I CGGCCG 2 cut(s) 160, 247
Eco57I CTGAAG 1 cut(s) 222
Eco72I CACGTG 1 cut(s) 394
Eco88I CYCGRG 1 cut(s) 278
Eco91I GGTNACC 1 cut(s) 669
EcoO65I GGTNACC 1 cut(s) 669
EcoRII CCWGG 2 cut(s) 71, 267
EcoT14I CCWWGG 4 cut(s) 84, 168, 293, 350
EcoT38I GRGCYC 1 cut(s) 286
EgeI GGCGCC 2 cut(s) 369, 375
EheI GGCGCC 2 cut(s) 369, 375
ErhI CCWWGG 4 cut(s) 84, 168, 293, 350
FaeI CATG 2 cut(s) 556, 733
FaiI YATR 8 cut(s) 359, 477, 509, 554, 585, 599, 660, 731
FaqI GGGAC 2 cut(s) 430, 704
FatI CATG 2 cut(s) 552, 729
Fnu4HI GCNGC 5 cut(s) 207, 250, 289, 426, 429
FriOI GRGCYC 1 cut(s) 286
Fsp4HI GCNGC 5 cut(s) 207, 250, 289, 426, 429
FspBI CTAG 1 cut(s) 294
GlaI GCGC 2 cut(s) 369, 375
GluI GCNGC 5 cut(s) 207, 250, 289, 426, 429
GsaI CCCAGC 1 cut(s) 530
GsuI CTGGAG 1 cut(s) 405
HaeII RGCGCY 2 cut(s) 371, 377
HaeIII GGCC 6 cut(s) 71, 134, 162, 249, 272, 743
HapII CCGG 8 cut(s) 159, 236, 365, 371, 377, 410, 722, 740
HgaI GACGC 1 cut(s) 236
HhaI GCGC 2 cut(s) 370, 376
Hin1I GRCGYC 3 cut(s) 228, 368, 374
Hin1II CATG 2 cut(s) 556, 733
Hin6I GCGC 2 cut(s) 368, 374
HinP1I GCGC 2 cut(s) 368, 374
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HinfI GANTC 2 cut(s) 79, 418
HpaI GTTAAC 1 cut(s) 22
HpaII CCGG 8 cut(s) 159, 236, 365, 371, 377, 410, 722, 740
HphI GGTGA 4 cut(s) 131, 148, 440, 638
Hpy166II GTNNAC 2 cut(s) 22, 580
Hpy188I TCNGA 3 cut(s) 62, 96, 148
Hpy188III TCNNGA 1 cut(s) 184
Hpy8I GTNNAC 2 cut(s) 22, 580
Hpy99I CGWCG 2 cut(s) 62, 713
HpyAV CCTTC 1 cut(s) 208
HpyCH4III ACNGT 4 cut(s) 119, 536, 718, 766
HpyCH4IV ACGT 4 cut(s) 18, 188, 393, 708
HpyCH4V TGCA 4 cut(s) 264, 386, 397, 500
HpyF10VI GCNNNNNNNGC 3 cut(s) 206, 215, 749
HpyF3I CTNAG 2 cut(s) 95, 210
HpySE526I ACGT 4 cut(s) 18, 188, 393, 708
Hsp92I GRCGYC 3 cut(s) 228, 368, 374
Hsp92II CATG 2 cut(s) 556, 733
HspAI GCGC 2 cut(s) 368, 374
KasI GGCGCC 2 cut(s) 367, 373
KroI GCCGGC 3 cut(s) 364, 370, 376
KroNI GCCGGC 3 cut(s) 366, 372, 378
KspAI GTTAAC 1 cut(s) 22
Kzo9I GATC 2 cut(s) 123, 164
LmnI GCTCC 1 cut(s) 757
Lsp1109I GCAGC 2 cut(s) 437, 440
LweI GCATC 1 cut(s) 609
MaeI CTAG 1 cut(s) 294
MaeII ACGT 4 cut(s) 18, 188, 393, 708
MaeIII GTNAC 4 cut(s) 184, 548, 669, 704
MalI GATC 2 cut(s) 125, 166
MboI GATC 2 cut(s) 123, 164
MboII GAAGA 2 cut(s) 46, 676
MfeI CAATTG 1 cut(s) 747
MflI RGATCY 1 cut(s) 123
MhlI GDGCHC 2 cut(s) 105, 286
MluCI AATT 2 cut(s) 680, 747
Mly113I GGCGCC 2 cut(s) 368, 374
MlyI GAGTC 2 cut(s) 73, 412
MmeI TCCRAC 1 cut(s) 40
MreI CGCCGGCG 2 cut(s) 364, 370
MroNI GCCGGC 3 cut(s) 364, 370, 376
MseI TTAA 1 cut(s) 21
MslI CAYNNNNRTG 1 cut(s) 617
MspI CCGG 8 cut(s) 159, 236, 365, 371, 377, 410, 722, 740
MspR9I CCNGG 4 cut(s) 73, 269, 410, 722
MunI CAATTG 1 cut(s) 747
MvaI CCWGG 2 cut(s) 73, 269
MwoI GCNNNNNNNGC 3 cut(s) 206, 215, 749
NaeI GCCGGC 3 cut(s) 366, 372, 378
NarI GGCGCC 2 cut(s) 368, 374
NciI CCSGG 2 cut(s) 410, 722
NdeII GATC 2 cut(s) 123, 164
NgoMIV GCCGGC 3 cut(s) 364, 370, 376
NlaIII CATG 2 cut(s) 556, 733
NlaIV GGNNCC 4 cut(s) 369, 375, 381, 720
NmuCI GTSAC 2 cut(s) 184, 704
PaqCI CACCTGC 1 cut(s) 391
PdiI GCCGGC 3 cut(s) 366, 372, 378
PflMI CCANNNNNTGG 2 cut(s) 476, 598
PkrI GCNGC 5 cut(s) 208, 251, 290, 427, 430
PleI GAGTC 2 cut(s) 73, 412
PluTI GGCGCC 2 cut(s) 371, 377
PmaCI CACGTG 1 cut(s) 394
PmlI CACGTG 1 cut(s) 394
PpsI GAGTC 2 cut(s) 73, 412
Ppu21I YACGTR 1 cut(s) 394
PshAI GACNNNNGTC 2 cut(s) 50, 352
Psp1406I AACGTT 1 cut(s) 18
Psp6I CCWGG 2 cut(s) 71, 267
PspCI CACGTG 1 cut(s) 394
PspEI GGTNACC 1 cut(s) 669
PspFI CCCAGC 1 cut(s) 526
PspGI CCWGG 2 cut(s) 71, 267
PspN4I GGNNCC 4 cut(s) 369, 375, 381, 720
PspPI GGNCC 3 cut(s) 347, 605, 718
PstNI CAGNNNCTG 1 cut(s) 434
PsuI RGATCY 1 cut(s) 123
RsaI GTAC 6 cut(s) 116, 404, 438, 538, 581, 629
RsaNI GTAC 6 cut(s) 115, 403, 437, 537, 580, 628
RseI CAYNNNNRTG 1 cut(s) 617
SaqAI TTAA 1 cut(s) 21
SatI GCNGC 5 cut(s) 207, 250, 289, 426, 429
Sau3AI GATC 2 cut(s) 123, 164
Sau96I GGNCC 3 cut(s) 347, 605, 718
ScaI AGTACT 1 cut(s) 538
SchI GAGTC 2 cut(s) 73, 412
ScrFI CCNGG 4 cut(s) 73, 269, 410, 722
SduI GDGCHC 2 cut(s) 105, 286
SfaNI GCATC 1 cut(s) 609
SfoI GGCGCC 2 cut(s) 369, 375
SgrAI CRCCGGYG 2 cut(s) 364, 370
SinI GGWCC 3 cut(s) 347, 605, 718
SmiMI CAYNNNNRTG 1 cut(s) 617
SmlI CTYRAG 1 cut(s) 573
SmoI CTYRAG 1 cut(s) 573
Sse9I AATT 2 cut(s) 680, 747
SsiI CCGC 3 cut(s) 206, 250, 289
SspDI GGCGCC 2 cut(s) 367, 373
SspMI CTAG 1 cut(s) 294
StyD4I CCNGG 4 cut(s) 71, 267, 408, 720
StyI CCWWGG 4 cut(s) 84, 168, 293, 350
TaaI ACNGT 4 cut(s) 119, 536, 718, 766
TaiI ACGT 4 cut(s) 21, 191, 396, 711
TaqI TCGA 1 cut(s) 108
TasI AATT 2 cut(s) 680, 747
TatI WGTACW 1 cut(s) 536
TauI GCSGC 3 cut(s) 209, 252, 291
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TscAI CASTG 1 cut(s) 771
TseFI GTSAC 2 cut(s) 184, 704
TseI GCWGC 2 cut(s) 425, 428
Tsp45I GTSAC 2 cut(s) 184, 704
TspDTI ATGAA 1 cut(s) 569
TspRI CASTG 1 cut(s) 771
Van91I CCANNNNNTGG 2 cut(s) 476, 598
VpaK11BI GGWCC 3 cut(s) 347, 605, 718
XcmI CCANNNNNNNNNTGG 2 cut(s) 265, 599
XmaJI CCTAGG 1 cut(s) 293
XspI CTAG 1 cut(s) 294
ZrmI AGTACT 1 cut(s) 538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.