Rh1DG316300

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0006332
Physical Location & Seq
Reverse (-)
54278397 .. 54281307
2911 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG316300.1

Sequence Viewer

Length: 564 bp
ATGACAATGAGCAACAACGTTAACCAGTTCGGCGACACGACATTGACCAAAGTCTTCGTCGGAGGGCTGGCCTGGGAGACTCCCAAGGAGGCTCTGAGAGAGCACTTCGACAAGTACGGTGAGATCTTGGAGGCCGTCATCATCTCCGATAAGCTCACCGGCAGATCCAAGGGCTACGGCTTCGTGACGTTCAAGGAGGCTGAAGCGGCTAAGAAGGCTTGCGAGGACGCCACGCCGGTCATCAACGGCCGCCGTGCCAACTGCAACCTCGCCTCGCTCGGGGCTCGCCGCCCTAGGTCGGCTTCCACCACCACTCCTCCTCCTCAACGAGTATCAAATGGTGGAGGACAAAGGTCTATGTCACCGGCGCCGGCGCCGGCACCTACAAATCACGTGCAATGGTACTACCCGGCAGGGACTCCAGCAGCAGCTTCTGTACCATTTCATCACCAGCATCATCAGGCTGTTCCATTCTATGGATACTCCCCAACCTACATTGCAACTGATATGGGCTACAATCACGTAAGTTTTTACATCTCATCCAAGTCAGATCTATTTGTTTAA

Protein Analysis

187

Amino Acids

20.35

Weight (kDa)

9.08

Isoelectric Point (pI)

51.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 18 - 75 1.7e-17 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 367, 373, 379
AccB7I CCANNNNNTGG 1 cut(s) 476
AciI CCGC 3 cut(s) 206, 250, 289
AclI AACGTT 1 cut(s) 18
AclWI GGATC 1 cut(s) 159
AcoI YGGCCR 1 cut(s) 247
AcuI CTGAAG 1 cut(s) 222
AcvI CACGTG 1 cut(s) 394
AcyI GRCGYC 3 cut(s) 228, 368, 374
AfaI GTAC 3 cut(s) 116, 404, 438
AfiI CCNNNNNNNGG 3 cut(s) 279, 298, 476
AgsI TTSAA 1 cut(s) 193
AjnI CCWGG 1 cut(s) 71
AluBI AGCT 2 cut(s) 154, 431
AluI AGCT 2 cut(s) 154, 431
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 1 cut(s) 71
AlwI GGATC 1 cut(s) 159
AlwNI CAGNNNCTG 1 cut(s) 434
Ama87I CYCGRG 1 cut(s) 278
AoxI GGCC 3 cut(s) 69, 132, 247
ApeKI GCWGC 2 cut(s) 425, 428
ArsI GACNNNNNNTTYG 2 cut(s) 42, 74
AspA2I CCTAGG 1 cut(s) 293
AspLEI GCGC 2 cut(s) 370, 376
AsuC2I CCSGG 1 cut(s) 410
AsuHPI GGTGA 4 cut(s) 131, 148, 354, 440
AvaI CYCGRG 1 cut(s) 278
AvrII CCTAGG 1 cut(s) 293
BanI GGYRCC 3 cut(s) 367, 373, 379
BanII GRGCYC 1 cut(s) 286
BbrPI CACGTG 1 cut(s) 394
BbsI GAAGAC 1 cut(s) 46
Bbv12I GWGCWC 1 cut(s) 105
BbvI GCAGC 2 cut(s) 437, 440
BceAI ACGGC 4 cut(s) 119, 193, 237, 262
BciT130I CCWGG 1 cut(s) 73
BciVI GTATCC 1 cut(s) 473
BcnI CCSGG 1 cut(s) 410
BcoDI GTCTC 1 cut(s) 71
BfaI CTAG 1 cut(s) 294
BfoI RGCGCY 2 cut(s) 371, 377
BfuI GTATCC 1 cut(s) 473
BglII AGATCT 2 cut(s) 123, 550
BisI GCNGC 5 cut(s) 207, 250, 289, 426, 429
BlnI CCTAGG 1 cut(s) 293
BlsI GCNGC 5 cut(s) 208, 251, 290, 427, 430
Bme1390I CCNGG 2 cut(s) 73, 410
BmeT110I CYCGRG 1 cut(s) 278
BmiI GGNNCC 3 cut(s) 369, 375, 381
BmrFI CCNGG 2 cut(s) 73, 410
BmsI GCATC 1 cut(s) 463
BoxI GACNNNNGTC 2 cut(s) 50, 352
BpiI GAAGAC 1 cut(s) 46
BpmI CTGGAG 1 cut(s) 405
BpuMI CCSGG 1 cut(s) 410
BsaAI YACGTR 2 cut(s) 394, 523
BsaHI GRCGYC 3 cut(s) 228, 368, 374
BsaJI CCNNGG 4 cut(s) 72, 84, 168, 293
BsaXI ACNNNNNCTCC 6 cut(s) 298, 301, 304, 328, 331, 334
Bsc4I CCNNNNNNNGG 3 cut(s) 279, 298, 476
Bse118I RCCGGY 5 cut(s) 158, 235, 364, 370, 376
Bse1I ACTGG 1 cut(s) 25
Bse3DI GCAATG 2 cut(s) 404, 495
BseBI CCWGG 1 cut(s) 73
BseDI CCNNGG 4 cut(s) 72, 84, 168, 293
BseGI GGATG 1 cut(s) 539
BseLI CCNNNNNNNGG 3 cut(s) 279, 298, 476
BseMI GCAATG 2 cut(s) 404, 495
BseMII CTCAG 1 cut(s) 86
BseNI ACTGG 1 cut(s) 25
BseRI GAGGAG 3 cut(s) 306, 309, 312
BseX3I CGGCCG 1 cut(s) 247
BseXI GCAGC 2 cut(s) 437, 440
Bsh1285I CGRYCG 1 cut(s) 250
BshFI GGCC 3 cut(s) 71, 134, 249
BshNI GGYRCC 3 cut(s) 367, 373, 379
BsiEI CGRYCG 1 cut(s) 250
BsiHKAI GWGCWC 1 cut(s) 105
BsiHKCI CYCGRG 1 cut(s) 278
BsiSI CCGG 6 cut(s) 159, 236, 365, 371, 377, 410
BslFI GGGAC 1 cut(s) 430
BslI CCNNNNNNNGG 3 cut(s) 279, 298, 476
BsmAI GTCTC 1 cut(s) 71
BsmFI GGGAC 1 cut(s) 430
BsnI GGCC 3 cut(s) 71, 134, 249
BsoBI CYCGRG 1 cut(s) 278
Bsp1286I GDGCHC 2 cut(s) 105, 286
Bsp143I GATC 3 cut(s) 123, 164, 550
BspACI CCGC 3 cut(s) 206, 250, 289
BspANI GGCC 3 cut(s) 71, 134, 249
BspCNI CTCAG 1 cut(s) 87
BspLI GGNNCC 3 cut(s) 369, 375, 381
BspPI GGATC 1 cut(s) 159
BspT107I GGYRCC 3 cut(s) 367, 373, 379
BsrDI GCAATG 2 cut(s) 404, 495
BsrFI RCCGGY 5 cut(s) 158, 235, 364, 370, 376
BsrI ACTGG 1 cut(s) 25
BssAI RCCGGY 5 cut(s) 158, 235, 364, 370, 376
BssECI CCNNGG 4 cut(s) 72, 84, 168, 293
BssMI GATC 3 cut(s) 123, 164, 550
BssNI GRCGYC 3 cut(s) 228, 368, 374
BssT1I CCWWGG 3 cut(s) 84, 168, 293
Bst2UI CCWGG 1 cut(s) 73
Bst4CI ACNGT 1 cut(s) 119
BstACI GRCGYC 3 cut(s) 228, 368, 374
BstBAI YACGTR 2 cut(s) 394, 523
BstC8I GCNNGC 5 cut(s) 69, 220, 286, 372, 378
BstDEI CTNAG 2 cut(s) 95, 210
BstF5I GGATG 1 cut(s) 539
BstH2I RGCGCY 2 cut(s) 371, 377
BstHHI GCGC 2 cut(s) 370, 376
BstKTI GATC 3 cut(s) 126, 167, 553
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 3 cut(s) 123, 164, 550
BstMCI CGRYCG 1 cut(s) 250
BstMWI GCNNNNNNNGC 2 cut(s) 206, 215
BstNI CCWGG 1 cut(s) 73
BstPAI GACNNNNGTC 2 cut(s) 50, 352
BstSCI CCNGG 2 cut(s) 71, 408
BstV1I GCAGC 2 cut(s) 437, 440
BstV2I GAAGAC 1 cut(s) 46
BstX2I RGATCY 3 cut(s) 123, 164, 550
BstYI RGATCY 3 cut(s) 123, 164, 550
BstZI CGGCCG 1 cut(s) 247
BsuI GTATCC 1 cut(s) 473
BsuRI GGCC 3 cut(s) 71, 134, 249
BtsCI GGATG 1 cut(s) 539
Cac8I GCNNGC 5 cut(s) 69, 220, 286, 372, 378
CaiI CAGNNNCTG 1 cut(s) 434
CfoI GCGC 2 cut(s) 370, 376
Cfr10I RCCGGY 5 cut(s) 158, 235, 364, 370, 376
CseI GACGC 1 cut(s) 236
Csp6I GTAC 3 cut(s) 115, 403, 437
CviQI GTAC 3 cut(s) 115, 403, 437
DdeI CTNAG 2 cut(s) 95, 210
DinI GGCGCC 2 cut(s) 369, 375
DpnI GATC 3 cut(s) 125, 166, 552
DpnII GATC 3 cut(s) 123, 164, 550
EaeI YGGCCR 1 cut(s) 247
EagI CGGCCG 1 cut(s) 247
EclXI CGGCCG 1 cut(s) 247
Eco130I CCWWGG 3 cut(s) 84, 168, 293
Eco24I GRGCYC 1 cut(s) 286
Eco52I CGGCCG 1 cut(s) 247
Eco57I CTGAAG 1 cut(s) 222
Eco72I CACGTG 1 cut(s) 394
Eco88I CYCGRG 1 cut(s) 278
EcoRII CCWGG 1 cut(s) 71
EcoT14I CCWWGG 3 cut(s) 84, 168, 293
EcoT38I GRGCYC 1 cut(s) 286
EgeI GGCGCC 2 cut(s) 369, 375
EheI GGCGCC 2 cut(s) 369, 375
ErhI CCWWGG 3 cut(s) 84, 168, 293
FaiI YATR 3 cut(s) 359, 477, 509
FaqI GGGAC 1 cut(s) 430
Fnu4HI GCNGC 5 cut(s) 207, 250, 289, 426, 429
FokI GGATG 1 cut(s) 526
FriOI GRGCYC 1 cut(s) 286
Fsp4HI GCNGC 5 cut(s) 207, 250, 289, 426, 429
FspBI CTAG 1 cut(s) 294
GlaI GCGC 2 cut(s) 369, 375
GluI GCNGC 5 cut(s) 207, 250, 289, 426, 429
GsuI CTGGAG 1 cut(s) 405
HaeII RGCGCY 2 cut(s) 371, 377
HaeIII GGCC 3 cut(s) 71, 134, 249
HapII CCGG 6 cut(s) 159, 236, 365, 371, 377, 410
HgaI GACGC 1 cut(s) 236
HhaI GCGC 2 cut(s) 370, 376
Hin1I GRCGYC 3 cut(s) 228, 368, 374
Hin6I GCGC 2 cut(s) 368, 374
HinP1I GCGC 2 cut(s) 368, 374
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HinfI GANTC 2 cut(s) 79, 418
HpaI GTTAAC 1 cut(s) 22
HpaII CCGG 6 cut(s) 159, 236, 365, 371, 377, 410
HphI GGTGA 4 cut(s) 131, 148, 354, 440
Hpy166II GTNNAC 1 cut(s) 22
Hpy188I TCNGA 4 cut(s) 62, 96, 148, 550
Hpy188III TCNNGA 1 cut(s) 184
Hpy8I GTNNAC 1 cut(s) 22
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 1 cut(s) 208
HpyCH4III ACNGT 1 cut(s) 119
HpyCH4IV ACGT 4 cut(s) 18, 188, 393, 522
HpyCH4V TGCA 3 cut(s) 264, 397, 500
HpyF10VI GCNNNNNNNGC 2 cut(s) 206, 215
HpyF3I CTNAG 2 cut(s) 95, 210
HpySE526I ACGT 4 cut(s) 18, 188, 393, 522
Hsp92I GRCGYC 3 cut(s) 228, 368, 374
HspAI GCGC 2 cut(s) 368, 374
KasI GGCGCC 2 cut(s) 367, 373
KroI GCCGGC 2 cut(s) 370, 376
KroNI GCCGGC 2 cut(s) 372, 378
KspAI GTTAAC 1 cut(s) 22
Kzo9I GATC 3 cut(s) 123, 164, 550
Lsp1109I GCAGC 2 cut(s) 437, 440
LweI GCATC 1 cut(s) 463
MaeI CTAG 1 cut(s) 294
MaeII ACGT 4 cut(s) 18, 188, 393, 522
MaeIII GTNAC 2 cut(s) 184, 360
MalI GATC 3 cut(s) 125, 166, 552
MboI GATC 3 cut(s) 123, 164, 550
MboII GAAGA 1 cut(s) 46
MflI RGATCY 3 cut(s) 123, 164, 550
MhlI GDGCHC 2 cut(s) 105, 286
Mly113I GGCGCC 2 cut(s) 368, 374
MlyI GAGTC 2 cut(s) 73, 412
MmeI TCCRAC 1 cut(s) 40
MreI CGCCGGCG 1 cut(s) 370
MroNI GCCGGC 2 cut(s) 370, 376
MseI TTAA 2 cut(s) 21, 562
MspI CCGG 6 cut(s) 159, 236, 365, 371, 377, 410
MspR9I CCNGG 2 cut(s) 73, 410
MvaI CCWGG 1 cut(s) 73
MwoI GCNNNNNNNGC 2 cut(s) 206, 215
NaeI GCCGGC 2 cut(s) 372, 378
NarI GGCGCC 2 cut(s) 368, 374
NciI CCSGG 1 cut(s) 410
NdeII GATC 3 cut(s) 123, 164, 550
NgoMIV GCCGGC 2 cut(s) 370, 376
NlaIV GGNNCC 3 cut(s) 369, 375, 381
NmuCI GTSAC 2 cut(s) 184, 360
PdiI GCCGGC 2 cut(s) 372, 378
PflMI CCANNNNNTGG 1 cut(s) 476
PkrI GCNGC 5 cut(s) 208, 251, 290, 427, 430
PleI GAGTC 2 cut(s) 73, 412
PluTI GGCGCC 2 cut(s) 371, 377
PmaCI CACGTG 1 cut(s) 394
PmlI CACGTG 1 cut(s) 394
PpsI GAGTC 2 cut(s) 73, 412
Ppu21I YACGTR 2 cut(s) 394, 523
PshAI GACNNNNGTC 2 cut(s) 50, 352
Psp1406I AACGTT 1 cut(s) 18
Psp6I CCWGG 1 cut(s) 71
PspCI CACGTG 1 cut(s) 394
PspGI CCWGG 1 cut(s) 71
PspN4I GGNNCC 3 cut(s) 369, 375, 381
PstNI CAGNNNCTG 1 cut(s) 434
PsuI RGATCY 3 cut(s) 123, 164, 550
RsaI GTAC 3 cut(s) 116, 404, 438
RsaNI GTAC 3 cut(s) 115, 403, 437
SaqAI TTAA 2 cut(s) 21, 562
SatI GCNGC 5 cut(s) 207, 250, 289, 426, 429
Sau3AI GATC 3 cut(s) 123, 164, 550
SchI GAGTC 2 cut(s) 73, 412
ScrFI CCNGG 2 cut(s) 73, 410
SduI GDGCHC 2 cut(s) 105, 286
SfaNI GCATC 1 cut(s) 463
SfoI GGCGCC 2 cut(s) 369, 375
SgrAI CRCCGGYG 2 cut(s) 364, 370
SsiI CCGC 3 cut(s) 206, 250, 289
SspDI GGCGCC 2 cut(s) 367, 373
SspMI CTAG 1 cut(s) 294
StyD4I CCNGG 2 cut(s) 71, 408
StyI CCWWGG 3 cut(s) 84, 168, 293
TaaI ACNGT 1 cut(s) 119
TaiI ACGT 4 cut(s) 21, 191, 396, 525
TaqI TCGA 1 cut(s) 108
TauI GCSGC 3 cut(s) 209, 252, 291
Tru1I TTAA 2 cut(s) 21, 562
Tru9I TTAA 2 cut(s) 21, 562
TseFI GTSAC 2 cut(s) 184, 360
TseI GCWGC 2 cut(s) 425, 428
Tsp45I GTSAC 2 cut(s) 184, 360
TspDTI ATGAA 1 cut(s) 434
Van91I CCANNNNNTGG 1 cut(s) 476
XmaJI CCTAGG 1 cut(s) 293
XspI CTAG 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.