Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0006332

Physical Location & Seq

Genomic Coordinates Reverse (-)

22648887 .. 22650679

Gene Structure 1793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1112300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGACAATGAGCAACAACGTCACTCACGGGCAGTTCGGTGACACCACACTGACCAAAGTCTTCGTCGGAGGGCTGGCGTGGGAGACTCCCAAAGAGGCCCTGAGGGCGCACTTCGAAAAGTACGGCGAGATCTTCGAGGCCGTCATCATCTCCGACAAACTCACCGGCCGATCCAAGGGCTACGGTTTCGTAACCTTCAAGGAGCCGGAGGCGGCTAAGAAGGCTTGTGAGGATGCGACGCCGGTCATCAACGGCCGCCGTGCCAACTGCAACCTCGCTTCCCTCGGGGCTCGCCGCCCTAGGTCCGCGTCAAACACCACCCCTCCTCCTCAGCGAGGATCCAACGGTGGGGGAGCGAGGTCCATGTCACCTGCACCTGCACCTGCAAATCACGTGCAGTGGTACTACCCAGCACCAACAGGGACTCCGACGACCACCCCATTCCACCACCAGCATCACCAGGCCGTTCCATTTTATGGCTACTCCCCCACATACATTGCTCCTGATATGAGTTACCCTCATGTGGGCTACACAGGTCGAGCTTACATGAACGGGCACTACTCTGCTCAAGTGTACCCAGCACAGCCTATGGTGGGACACAACACTTTGATGCCAATGTATCCTCTCTACCATTACCACCATCACCACCAATCACATACAATGGGCTTACCTGCTCACATCTACTCGCCAACCACGGCCGGACACGTGGCCACAGTCCCAACCATCATGTCCAAACCAGCATCCATTGCTCCTAACACAGGTAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010029 GO:0010033 GO:0010035 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0097159 GO:0097305 GO:1900140 GO:1901363 GO:1901700 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

256

Amino Acids

27.8

Weight (kDa)

9.45

Isoelectric Point (pI)

56.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	20 - 77	3.8e-17	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54770 AT3G54770 AT3G54770
fragaria_vesca	FvH4_7g20260 FvH4_7g20260 FvH4_7g20260 FvH4_7g20260
malus_domestica	MD01G1112300.v1.1 MD07G1180100.v1.1
prunus_persica	Prupe.2G219600_v2.0.a1 Prupe.2G219600_v2.0.a1 Prupe.2G219600_v2.0.a1
pyrus_communis	pycom01g14080 pycom07g17340
rosa_chinensis	RchiOBHm_Chr1g0364201
rosa_laevigata	RLG00000027506
rosa_multiflora	Rmu_sc0000071.1_g000004
rosa_roxburghii	Rroxscaffold_4G00292570
rosa_rugosa	Rorug01G0314600.1 Rorug01G0314700 Rorug01G0314700 Rorug01G0314800
rosa_samantha	Rh1AG322100 Rh1BG284900 Rh1CG301400 Rh1DG316300
rosa_wichuraiana	Rw1G028530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	379, 385, 391
Acc36I	ACCTGC	4 cut(s)	379, 385, 391, 679
AccB7I	CCANNNNNTGG	1 cut(s)	476
AccII	CGCG	1 cut(s)	308
AciI	CCGC	4 cut(s)	212, 256, 295, 306
AclWI	GGATC	3 cut(s)	165, 333, 346
AcoI	YGGCCR	4 cut(s)	166, 253, 696, 708
AcvI	CACGTG	2 cut(s)	394, 706
AcyI	GRCGYC	1 cut(s)	239
AfaI	GTAC	3 cut(s)	122, 404, 575
AfiI	CCNNNNNNNGG	8 cut(s)	175, 335, 348, 476, 523, 524, 593, 758
AflIII	ACRYGT	1 cut(s)	703
AgsI	TTSAA	1 cut(s)	199
AjnI	CCWGG	1 cut(s)	459
AluBI	AGCT	1 cut(s)	542
AluI	AGCT	1 cut(s)	542
Alw26I	GTCTC	1 cut(s)	77
AlwI	GGATC	3 cut(s)	165, 333, 346
Ama87I	CYCGRG	1 cut(s)	284
AoxI	GGCC	7 cut(s)	96, 138, 166, 253, 462, 696, 708
ArsI	GACNNNNNNTTYG	2 cut(s)	48, 80
AspA2I	CCTAGG	1 cut(s)	299
AspLEI	GCGC	1 cut(s)	109
AspS9I	GGNCC	3 cut(s)	97, 303, 360
AsuHPI	GGTGA	5 cut(s)	50, 154, 360, 449, 635
AsuII	TTCGAA	1 cut(s)	114
AvaI	CYCGRG	1 cut(s)	284
AvaII	GGWCC	2 cut(s)	303, 360
AvrII	CCTAGG	1 cut(s)	299
AxyI	CCTNAGG	1 cut(s)	101
BaeGI	GKGCMC	1 cut(s)	558
BalI	TGGCCA	1 cut(s)	710
BamHI	GGATCC	1 cut(s)	338
BanII	GRGCYC	1 cut(s)	292
BbrPI	CACGTG	2 cut(s)	394, 706
BbsI	GAAGAC	1 cut(s)	52
BbvCI	CCTCAGC	1 cut(s)	330
BccI	CCATC	2 cut(s)	648, 731
BceAI	ACGGC	6 cut(s)	125, 139, 243, 268, 449, 711
BciT130I	CCWGG	1 cut(s)	461
BciVI	GTATCC	1 cut(s)	630
BcoDI	GTCTC	1 cut(s)	77
BfaI	CTAG	1 cut(s)	300
BfuAI	ACCTGC	4 cut(s)	379, 385, 391, 679
BfuI	GTATCC	1 cut(s)	630
BglI	GCCNNNNNGGC	1 cut(s)	104
BglII	AGATCT	1 cut(s)	129
BisI	GCNGC	3 cut(s)	213, 256, 295
BlnI	CCTAGG	1 cut(s)	299
BlsI	GCNGC	3 cut(s)	214, 257, 296
Bme1390I	CCNGG	1 cut(s)	461
Bme18I	GGWCC	2 cut(s)	303, 360
BmeT110I	CYCGRG	1 cut(s)	284
BmgT120I	GGNCC	3 cut(s)	97, 303, 360
BmiI	GGNNCC	2 cut(s)	204, 340
BmrFI	CCNGG	1 cut(s)	461
BmsI	GCATC	4 cut(s)	223, 463, 600, 749
BoxI	GACNNNNGTC	2 cut(s)	56, 242
BpiI	GAAGAC	1 cut(s)	52
BplI	GAGNNNNNCTC	2 cut(s)	502, 534
Bpu10I	CCTNAGC	1 cut(s)	330
Bpu14I	TTCGAA	1 cut(s)	114
BpuEI	CTTGAG	1 cut(s)	552
BsaAI	YACGTR	2 cut(s)	394, 706
BsaHI	GRCGYC	1 cut(s)	239
BsaJI	CCNNGG	4 cut(s)	174, 283, 299, 693
BsaXI	ACNNNNNCTCC	6 cut(s)	307, 310, 337, 340, 409, 439
Bsc4I	CCNNNNNNNGG	8 cut(s)	175, 335, 348, 476, 523, 524, 593, 758
Bse118I	RCCGGY	2 cut(s)	164, 241
Bse21I	CCTNAGG	1 cut(s)	101
Bse3DI	GCAATG	2 cut(s)	495, 744
BseBI	CCWGG	1 cut(s)	461
BseDI	CCNNGG	4 cut(s)	174, 283, 299, 693
BseGI	GGATG	2 cut(s)	238, 740
BseLI	CCNNNNNNNGG	8 cut(s)	175, 335, 348, 476, 523, 524, 593, 758
BseMI	GCAATG	2 cut(s)	495, 744
BseMII	CTCAG	2 cut(s)	92, 344
BseRI	GAGGAG	2 cut(s)	315, 318
BseSI	GKGCMC	1 cut(s)	558
BseX3I	CGGCCG	3 cut(s)	166, 253, 696
BseYI	CCCAGC	2 cut(s)	409, 577
BsgI	GTGCAG	3 cut(s)	357, 363, 416
Bsh1236I	CGCG	1 cut(s)	308
Bsh1285I	CGRYCG	3 cut(s)	169, 256, 699
BshFI	GGCC	7 cut(s)	98, 140, 168, 255, 464, 698, 710
BsiEI	CGRYCG	3 cut(s)	169, 256, 699
BsiHKCI	CYCGRG	1 cut(s)	284
BsiSI	CCGG	4 cut(s)	165, 206, 242, 699
BslFI	GGGAC	3 cut(s)	436, 609, 701
BslI	CCNNNNNNNGG	8 cut(s)	175, 335, 348, 476, 523, 524, 593, 758
BsmAI	GTCTC	1 cut(s)	77
BsmFI	GGGAC	3 cut(s)	436, 609, 701
BsnI	GGCC	7 cut(s)	98, 140, 168, 255, 464, 698, 710
BsoBI	CYCGRG	1 cut(s)	284
Bsp119I	TTCGAA	1 cut(s)	114
Bsp1286I	GDGCHC	2 cut(s)	292, 558
Bsp143I	GATC	3 cut(s)	129, 170, 338
BspACI	CCGC	4 cut(s)	212, 256, 295, 306
BspANI	GGCC	7 cut(s)	98, 140, 168, 255, 464, 698, 710
BspCNI	CTCAG	2 cut(s)	93, 343
BspFNI	CGCG	1 cut(s)	308
BspLI	GGNNCC	2 cut(s)	204, 340
BspMI	ACCTGC	4 cut(s)	379, 385, 391, 679
BspPI	GGATC	3 cut(s)	165, 333, 346
BspT104I	TTCGAA	1 cut(s)	114
BsrDI	GCAATG	2 cut(s)	495, 744
BsrFI	RCCGGY	2 cut(s)	164, 241
BssAI	RCCGGY	2 cut(s)	164, 241
BssECI	CCNNGG	4 cut(s)	174, 283, 299, 693
BssMI	GATC	3 cut(s)	129, 170, 338
BssNI	GRCGYC	1 cut(s)	239
BssT1I	CCWWGG	2 cut(s)	174, 299
Bst2UI	CCWGG	1 cut(s)	461
Bst4CI	ACNGT	3 cut(s)	185, 347, 715
BstACI	GRCGYC	1 cut(s)	239
BstAPI	GCANNNNNTGC	1 cut(s)	746
BstBAI	YACGTR	2 cut(s)	394, 706
BstBI	TTCGAA	1 cut(s)	114
BstC8I	GCNNGC	2 cut(s)	75, 292
BstDEI	CTNAG	3 cut(s)	101, 216, 330
BstDSI	CCRYGG	1 cut(s)	693
BstENI	CCTNNNNNAGG	2 cut(s)	333, 756
BstF5I	GGATG	2 cut(s)	238, 740
BstFNI	CGCG	1 cut(s)	308
BstHHI	GCGC	1 cut(s)	109
BstKTI	GATC	3 cut(s)	132, 173, 341
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	3 cut(s)	129, 170, 338
BstMCI	CGRYCG	3 cut(s)	169, 256, 699
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 221, 746
BstNI	CCWGG	1 cut(s)	461
BstPAI	GACNNNNGTC	2 cut(s)	56, 242
BstSCI	CCNGG	1 cut(s)	459
BstSLI	GKGCMC	1 cut(s)	558
BstUI	CGCG	1 cut(s)	308
BstV2I	GAAGAC	1 cut(s)	52
BstX2I	RGATCY	2 cut(s)	129, 338
BstYI	RGATCY	2 cut(s)	129, 338
BstZI	CGGCCG	3 cut(s)	166, 253, 696
Bsu36I	CCTNAGG	1 cut(s)	101
BsuI	GTATCC	1 cut(s)	630
BsuRI	GGCC	7 cut(s)	98, 140, 168, 255, 464, 698, 710
BtgI	CCRYGG	1 cut(s)	693
BtsCI	GGATG	2 cut(s)	238, 740
BtsI	GCAGTG	1 cut(s)	404
BtsIMutI	CAGTG	2 cut(s)	47, 404
BveI	ACCTGC	4 cut(s)	379, 385, 391, 679
Cac8I	GCNNGC	2 cut(s)	75, 292
CfoI	GCGC	1 cut(s)	109
Cfr10I	RCCGGY	2 cut(s)	164, 241
Cfr13I	GGNCC	3 cut(s)	97, 303, 360
CseI	GACGC	2 cut(s)	247, 297
Csp6I	GTAC	3 cut(s)	121, 403, 574
CspCI	CAANNNNNGTGG	2 cut(s)	478, 513
CviAII	CATG	4 cut(s)	364, 521, 547, 727
CviQI	GTAC	3 cut(s)	121, 403, 574
DdeI	CTNAG	3 cut(s)	101, 216, 330
DpnI	GATC	3 cut(s)	131, 172, 340
DpnII	GATC	3 cut(s)	129, 170, 338
EaeI	YGGCCR	4 cut(s)	166, 253, 696, 708
EagI	CGGCCG	3 cut(s)	166, 253, 696
EclXI	CGGCCG	3 cut(s)	166, 253, 696
Eco130I	CCWWGG	2 cut(s)	174, 299
Eco24I	GRGCYC	1 cut(s)	292
Eco47I	GGWCC	2 cut(s)	303, 360
Eco52I	CGGCCG	3 cut(s)	166, 253, 696
Eco72I	CACGTG	2 cut(s)	394, 706
Eco81I	CCTNAGG	1 cut(s)	101
Eco88I	CYCGRG	1 cut(s)	284
EcoNI	CCTNNNNNAGG	2 cut(s)	333, 756
EcoO109I	RGGNCCY	1 cut(s)	97
EcoRII	CCWGG	1 cut(s)	459
EcoT14I	CCWWGG	2 cut(s)	174, 299
EcoT38I	GRGCYC	1 cut(s)	292
ErhI	CCWWGG	2 cut(s)	174, 299
FaeI	CATG	4 cut(s)	367, 524, 550, 730
FaiI	YATR	9 cut(s)	365, 477, 493, 509, 522, 548, 590, 657, 728
FaqI	GGGAC	3 cut(s)	436, 609, 701
FatI	CATG	4 cut(s)	363, 520, 546, 726
Fnu4HI	GCNGC	3 cut(s)	213, 256, 295
FokI	GGATG	2 cut(s)	245, 727
FriOI	GRGCYC	1 cut(s)	292
Fsp4HI	GCNGC	3 cut(s)	213, 256, 295
FspBI	CTAG	1 cut(s)	300
GlaI	GCGC	1 cut(s)	108
GluI	GCNGC	3 cut(s)	213, 256, 295
GsaI	CCCAGC	2 cut(s)	413, 581
HaeIII	GGCC	7 cut(s)	98, 140, 168, 255, 464, 698, 710
HapII	CCGG	4 cut(s)	165, 206, 242, 699
HgaI	GACGC	2 cut(s)	247, 297
HhaI	GCGC	1 cut(s)	109
Hin1I	GRCGYC	1 cut(s)	239
Hin1II	CATG	4 cut(s)	367, 524, 550, 730
Hin6I	GCGC	1 cut(s)	107
HinP1I	GCGC	1 cut(s)	107
HinfI	GANTC	2 cut(s)	85, 424
HpaII	CCGG	4 cut(s)	165, 206, 242, 699
HphI	GGTGA	5 cut(s)	50, 154, 360, 449, 635
Hpy166II	GTNNAC	1 cut(s)	574
Hpy188I	TCNGA	3 cut(s)	68, 154, 429
Hpy188III	TCNNGA	1 cut(s)	503
Hpy8I	GTNNAC	1 cut(s)	574
Hpy99I	CGWCG	3 cut(s)	68, 241, 433
HpyAV	CCTTC	2 cut(s)	205, 214
HpyCH4III	ACNGT	3 cut(s)	185, 347, 715
HpyCH4IV	ACGT	3 cut(s)	18, 393, 705
HpyCH4V	TGCA	5 cut(s)	270, 374, 380, 386, 397
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 221, 746
HpyF3I	CTNAG	3 cut(s)	101, 216, 330
HpySE526I	ACGT	3 cut(s)	18, 393, 705
Hsp92I	GRCGYC	1 cut(s)	239
Hsp92II	CATG	4 cut(s)	367, 524, 550, 730
HspAI	GCGC	1 cut(s)	107
Kzo9I	GATC	3 cut(s)	129, 170, 338
LmnI	GCTCC	4 cut(s)	202, 353, 505, 754
LweI	GCATC	4 cut(s)	223, 463, 600, 749
MaeI	CTAG	1 cut(s)	300
MaeII	ACGT	3 cut(s)	18, 393, 705
MaeIII	GTNAC	5 cut(s)	19, 38, 190, 366, 512
MalI	GATC	3 cut(s)	131, 172, 340
MboI	GATC	3 cut(s)	129, 170, 338
MboII	GAAGA	2 cut(s)	52, 124
MflI	RGATCY	2 cut(s)	129, 338
MhlI	GDGCHC	2 cut(s)	292, 558
MlsI	TGGCCA	1 cut(s)	710
MluNI	TGGCCA	1 cut(s)	710
MlyI	GAGTC	2 cut(s)	79, 418
MmeI	TCCRAC	4 cut(s)	46, 177, 366, 452
Mox20I	TGGCCA	1 cut(s)	710
MscI	TGGCCA	1 cut(s)	710
MslI	CAYNNNNRTG	1 cut(s)	608
Msp20I	TGGCCA	1 cut(s)	710
MspI	CCGG	4 cut(s)	165, 206, 242, 699
MspR9I	CCNGG	1 cut(s)	461
MvaI	CCWGG	1 cut(s)	461
MvnI	CGCG	1 cut(s)	308
MwoI	GCNNNNNNNGC	3 cut(s)	104, 221, 746
NdeII	GATC	3 cut(s)	129, 170, 338
NlaIII	CATG	4 cut(s)	367, 524, 550, 730
NlaIV	GGNNCC	2 cut(s)	204, 340
NmuCI	GTSAC	3 cut(s)	19, 38, 366
NspV	TTCGAA	1 cut(s)	114
PaqCI	CACCTGC	3 cut(s)	379, 385, 391
PflMI	CCANNNNNTGG	1 cut(s)	476
PkrI	GCNGC	3 cut(s)	214, 257, 296
PleI	GAGTC	2 cut(s)	79, 418
PmaCI	CACGTG	2 cut(s)	394, 706
PmlI	CACGTG	2 cut(s)	394, 706
PpsI	GAGTC	2 cut(s)	79, 418
Ppu21I	YACGTR	2 cut(s)	394, 706
PshAI	GACNNNNGTC	2 cut(s)	56, 242
Psp6I	CCWGG	1 cut(s)	459
PspCI	CACGTG	2 cut(s)	394, 706
PspFI	CCCAGC	2 cut(s)	409, 577
PspGI	CCWGG	1 cut(s)	459
PspN4I	GGNNCC	2 cut(s)	204, 340
PspPI	GGNCC	3 cut(s)	97, 303, 360
PsrI	GAACNNNNNNTAC	2 cut(s)	542, 574
PsuI	RGATCY	2 cut(s)	129, 338
RsaI	GTAC	3 cut(s)	122, 404, 575
RsaNI	GTAC	3 cut(s)	121, 403, 574
RseI	CAYNNNNRTG	1 cut(s)	608
SatI	GCNGC	3 cut(s)	213, 256, 295
Sau3AI	GATC	3 cut(s)	129, 170, 338
Sau96I	GGNCC	3 cut(s)	97, 303, 360
SchI	GAGTC	2 cut(s)	79, 418
ScrFI	CCNGG	1 cut(s)	461
SduI	GDGCHC	2 cut(s)	292, 558
SfaNI	GCATC	4 cut(s)	223, 463, 600, 749
SfuI	TTCGAA	1 cut(s)	114
SinI	GGWCC	2 cut(s)	303, 360
SmiMI	CAYNNNNRTG	1 cut(s)	608
SmlI	CTYRAG	1 cut(s)	567
SmoI	CTYRAG	1 cut(s)	567
SsiI	CCGC	4 cut(s)	212, 256, 295, 306
SspMI	CTAG	1 cut(s)	300
StyD4I	CCNGG	1 cut(s)	459
StyI	CCWWGG	2 cut(s)	174, 299
TaaI	ACNGT	3 cut(s)	185, 347, 715
TaiI	ACGT	3 cut(s)	21, 396, 708
TaqI	TCGA	3 cut(s)	114, 135, 538
TauI	GCSGC	3 cut(s)	215, 258, 297
TscAI	CASTG	2 cut(s)	54, 404
TseFI	GTSAC	3 cut(s)	19, 38, 366
Tsp45I	GTSAC	3 cut(s)	19, 38, 366
TspDTI	ATGAA	1 cut(s)	563
TspRI	CASTG	2 cut(s)	54, 404
Van91I	CCANNNNNTGG	1 cut(s)	476
VpaK11BI	GGWCC	2 cut(s)	303, 360
XagI	CCTNNNNNAGG	2 cut(s)	333, 756
XmaJI	CCTAGG	1 cut(s)	299
XspI	CTAG	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.