FvH4_7g20260

RNA-binding protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
16504731 .. 16507851
3121 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g20260.t1

Sequence Viewer

Length: 789 bp
ATGACAATGAGCAACAACGTTAACCAGTTCGGCGATACGACGCTGACCAAGGTCTTCGTCGGAGGGTTGGCCTGGGAGACTCCCAAGGAGGCTCTGAGAGAGCACTTCGACAAGTACGGTGAGATCTTGGAGGCCGTCATCATCTCCGATAAGCTCACCGGCAGATCCAAGGGCTACGGCTTCGTCACGTTCAAGGAGGCTGAAGCGGCTAAGAAGGCTTGCGAGGACGCCACGCCAGTCATCAACGGCCGCCGTGCCAACTGCAACCTGGCCTCCCTCGGCGCCCGCCGCCCTAGGTCGGCTTCGACTACCACCCCTCCTCCTCAACGAGTATCAAATGGTGGAGGAGCAAGGTCCATGTCGCCGGCGCCGGCGCCGGCACCTGCAAATCACGTGCAATGGTACTACCCGGCAGGGACTCCAGCAGCTGCTTCTGTACCATTTCATCACCAGCATCATCAGGCTGTTCCATTCTATGGATACTCCCCAACCTACATTGCAACTGATATGGGCTACAATCATAAGCTGGGATACAGCACTGGTGGGGGTTACATGAACGGGCATTACTCTCCTCAGGTGTACCATAGCCACCAGCCTATGGTTGGTCCAAACACATTGATGCCAATGTACCCTCTCTACCATTATCACCATCAATCACATACAATGGGGTTACCTGCTCAATTCTTCCCACCAACCACCGCAGGTCACGTCGCAACGGCGGTCCCGGCAATCATGTCGAAACCGGCCTCAATTGCTCCAAATAACACAGTGTGCTTGGCTGTGGAATAG

Protein Analysis

263

Amino Acids

28.28

Weight (kDa)

9.04

Isoelectric Point (pI)

58.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 18 - 75 3.2e-17 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 391
Acc36I ACCTGC 3 cut(s) 391, 682, 692
AccB1I GGYRCC 4 cut(s) 281, 367, 373, 379
AccB7I CCANNNNNTGG 2 cut(s) 476, 598
AciI CCGC 6 cut(s) 206, 250, 286, 289, 699, 719
AclI AACGTT 1 cut(s) 18
AclWI GGATC 1 cut(s) 159
AcoI YGGCCR 1 cut(s) 247
AcuI CTGAAG 1 cut(s) 222
AcvI CACGTG 1 cut(s) 394
AcyI GRCGYC 4 cut(s) 228, 282, 368, 374
AdeI CACNNNGTG 1 cut(s) 771
AfaI GTAC 5 cut(s) 116, 404, 438, 581, 629
AfiI CCNNNNNNNGG 4 cut(s) 298, 476, 598, 602
AgsI TTSAA 1 cut(s) 193
AjiI CACGTC 1 cut(s) 709
AjnI CCWGG 2 cut(s) 71, 267
AluBI AGCT 3 cut(s) 154, 428, 526
AluI AGCT 3 cut(s) 154, 428, 526
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 1 cut(s) 71
AlwI GGATC 1 cut(s) 159
AlwNI CAGNNNCTG 1 cut(s) 428
AoxI GGCC 5 cut(s) 69, 132, 247, 270, 744
ApeKI GCWGC 2 cut(s) 425, 428
AspA2I CCTAGG 1 cut(s) 293
AspLEI GCGC 3 cut(s) 284, 370, 376
AspS9I GGNCC 3 cut(s) 354, 605, 721
AsuC2I CCSGG 2 cut(s) 410, 725
AsuHPI GGTGA 4 cut(s) 131, 148, 440, 638
AvaII GGWCC 3 cut(s) 354, 605, 721
AvrII CCTAGG 1 cut(s) 293
AxyI CCTNAGG 1 cut(s) 573
BanI GGYRCC 4 cut(s) 281, 367, 373, 379
BbrPI CACGTG 1 cut(s) 394
BbsI GAAGAC 1 cut(s) 46
Bbv12I GWGCWC 1 cut(s) 105
BbvI GCAGC 2 cut(s) 415, 437
BccI CCATC 1 cut(s) 657
BceAI ACGGC 5 cut(s) 119, 193, 237, 262, 732
BcgI CGANNNNNNTGC 2 cut(s) 717, 751
BciT130I CCWGG 2 cut(s) 73, 269
BciVI GTATCC 2 cut(s) 473, 524
BcnI CCSGG 2 cut(s) 410, 725
BcoDI GTCTC 1 cut(s) 71
BfaI CTAG 1 cut(s) 294
BfoI RGCGCY 3 cut(s) 285, 371, 377
BfuAI ACCTGC 3 cut(s) 391, 682, 692
BfuI GTATCC 2 cut(s) 473, 524
BglII AGATCT 1 cut(s) 123
BisI GCNGC 5 cut(s) 207, 250, 289, 426, 429
BlnI CCTAGG 1 cut(s) 293
BlsI GCNGC 5 cut(s) 208, 251, 290, 427, 430
Bme1390I CCNGG 4 cut(s) 73, 269, 410, 725
Bme18I GGWCC 3 cut(s) 354, 605, 721
BmgBI CACGTC 1 cut(s) 709
BmgT120I GGNCC 3 cut(s) 354, 605, 721
BmiI GGNNCC 5 cut(s) 283, 369, 375, 381, 723
BmrFI CCNGG 4 cut(s) 73, 269, 410, 725
BmsI GCATC 2 cut(s) 463, 609
BoxI GACNNNNGTC 1 cut(s) 50
BpiI GAAGAC 1 cut(s) 46
BpmI CTGGAG 1 cut(s) 405
BpuMI CCSGG 2 cut(s) 410, 725
BsaAI YACGTR 1 cut(s) 394
BsaHI GRCGYC 4 cut(s) 228, 282, 368, 374
BsaJI CCNNGG 6 cut(s) 48, 72, 84, 168, 277, 293
BsaXI ACNNNNNCTCC 6 cut(s) 257, 287, 301, 304, 331, 334
Bsc4I CCNNNNNNNGG 4 cut(s) 298, 476, 598, 602
Bse118I RCCGGY 5 cut(s) 158, 364, 370, 376, 742
Bse1I ACTGG 3 cut(s) 25, 236, 544
Bse21I CCTNAGG 1 cut(s) 573
Bse3DI GCAATG 2 cut(s) 404, 495
BseBI CCWGG 2 cut(s) 73, 269
BseDI CCNNGG 6 cut(s) 48, 72, 84, 168, 277, 293
BseLI CCNNNNNNNGG 4 cut(s) 298, 476, 598, 602
BseMI GCAATG 2 cut(s) 404, 495
BseMII CTCAG 2 cut(s) 86, 587
BseNI ACTGG 3 cut(s) 25, 236, 544
BseRI GAGGAG 4 cut(s) 309, 312, 360, 561
BseX3I CGGCCG 1 cut(s) 247
BseXI GCAGC 2 cut(s) 415, 437
BseYI CCCAGC 1 cut(s) 526
Bsh1285I CGRYCG 1 cut(s) 250
BshFI GGCC 5 cut(s) 71, 134, 249, 272, 746
BshNI GGYRCC 4 cut(s) 281, 367, 373, 379
BsiEI CGRYCG 1 cut(s) 250
BsiHKAI GWGCWC 1 cut(s) 105
BsiSI CCGG 7 cut(s) 159, 365, 371, 377, 410, 725, 743
BslFI GGGAC 2 cut(s) 430, 707
BslI CCNNNNNNNGG 4 cut(s) 298, 476, 598, 602
BsmAI GTCTC 1 cut(s) 71
BsmFI GGGAC 2 cut(s) 430, 707
BsnI GGCC 5 cut(s) 71, 134, 249, 272, 746
Bsp1286I GDGCHC 1 cut(s) 105
Bsp143I GATC 2 cut(s) 123, 164
BspACI CCGC 6 cut(s) 206, 250, 286, 289, 699, 719
BspANI GGCC 5 cut(s) 71, 134, 249, 272, 746
BspCNI CTCAG 2 cut(s) 87, 586
BspLI GGNNCC 5 cut(s) 283, 369, 375, 381, 723
BspMI ACCTGC 3 cut(s) 391, 682, 692
BspPI GGATC 1 cut(s) 159
BspT107I GGYRCC 4 cut(s) 281, 367, 373, 379
BsrDI GCAATG 2 cut(s) 404, 495
BsrFI RCCGGY 5 cut(s) 158, 364, 370, 376, 742
BsrI ACTGG 3 cut(s) 25, 236, 544
BssAI RCCGGY 5 cut(s) 158, 364, 370, 376, 742
BssECI CCNNGG 6 cut(s) 48, 72, 84, 168, 277, 293
BssMI GATC 2 cut(s) 123, 164
BssNI GRCGYC 4 cut(s) 228, 282, 368, 374
BssT1I CCWWGG 4 cut(s) 48, 84, 168, 293
Bst2UI CCWGG 2 cut(s) 73, 269
Bst4CI ACNGT 2 cut(s) 119, 769
BstACI GRCGYC 4 cut(s) 228, 282, 368, 374
BstBAI YACGTR 1 cut(s) 394
BstC8I GCNNGC 5 cut(s) 220, 286, 366, 372, 378
BstDEI CTNAG 3 cut(s) 95, 210, 573
BstEII GGTNACC 1 cut(s) 669
BstH2I RGCGCY 3 cut(s) 285, 371, 377
BstHHI GCGC 3 cut(s) 284, 370, 376
BstKTI GATC 2 cut(s) 126, 167
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 2 cut(s) 123, 164
BstMCI CGRYCG 1 cut(s) 250
BstMWI GCNNNNNNNGC 5 cut(s) 206, 215, 288, 725, 752
BstNI CCWGG 2 cut(s) 73, 269
BstPAI GACNNNNGTC 1 cut(s) 50
BstPI GGTNACC 1 cut(s) 669
BstSCI CCNGG 4 cut(s) 71, 267, 408, 723
BstV1I GCAGC 2 cut(s) 415, 437
BstV2I GAAGAC 1 cut(s) 46
BstX2I RGATCY 2 cut(s) 123, 164
BstYI RGATCY 2 cut(s) 123, 164
BstZI CGGCCG 1 cut(s) 247
Bsu36I CCTNAGG 1 cut(s) 573
BsuI GTATCC 2 cut(s) 473, 524
BsuRI GGCC 5 cut(s) 71, 134, 249, 272, 746
BtrI CACGTC 1 cut(s) 709
BtsIMutI CAGTG 2 cut(s) 537, 774
BveI ACCTGC 3 cut(s) 391, 682, 692
Cac8I GCNNGC 5 cut(s) 220, 286, 366, 372, 378
CaiI CAGNNNCTG 1 cut(s) 428
CfoI GCGC 3 cut(s) 284, 370, 376
Cfr10I RCCGGY 5 cut(s) 158, 364, 370, 376, 742
Cfr13I GGNCC 3 cut(s) 354, 605, 721
CseI GACGC 2 cut(s) 49, 236
Csp6I GTAC 5 cut(s) 115, 403, 437, 580, 628
CviAII CATG 3 cut(s) 358, 553, 733
CviQI GTAC 5 cut(s) 115, 403, 437, 580, 628
DdeI CTNAG 3 cut(s) 95, 210, 573
DinI GGCGCC 3 cut(s) 283, 369, 375
DpnI GATC 2 cut(s) 125, 166
DpnII GATC 2 cut(s) 123, 164
DraIII CACNNNGTG 1 cut(s) 771
EaeI YGGCCR 1 cut(s) 247
EagI CGGCCG 1 cut(s) 247
EclXI CGGCCG 1 cut(s) 247
Eco130I CCWWGG 4 cut(s) 48, 84, 168, 293
Eco47I GGWCC 3 cut(s) 354, 605, 721
Eco52I CGGCCG 1 cut(s) 247
Eco57I CTGAAG 1 cut(s) 222
Eco72I CACGTG 1 cut(s) 394
Eco81I CCTNAGG 1 cut(s) 573
Eco91I GGTNACC 1 cut(s) 669
EcoO65I GGTNACC 1 cut(s) 669
EcoRII CCWGG 2 cut(s) 71, 267
EcoT14I CCWWGG 4 cut(s) 48, 84, 168, 293
EgeI GGCGCC 3 cut(s) 283, 369, 375
EheI GGCGCC 3 cut(s) 283, 369, 375
ErhI CCWWGG 4 cut(s) 48, 84, 168, 293
FaeI CATG 3 cut(s) 361, 556, 736
FaiI YATR 9 cut(s) 359, 477, 509, 522, 554, 585, 599, 660, 734
FaqI GGGAC 2 cut(s) 430, 707
FatI CATG 3 cut(s) 357, 552, 732
FauI CCCGC 1 cut(s) 293
Fnu4HI GCNGC 5 cut(s) 207, 250, 289, 426, 429
Fsp4HI GCNGC 5 cut(s) 207, 250, 289, 426, 429
FspBI CTAG 1 cut(s) 294
GlaI GCGC 3 cut(s) 283, 369, 375
GluI GCNGC 5 cut(s) 207, 250, 289, 426, 429
GsaI CCCAGC 1 cut(s) 530
GsuI CTGGAG 1 cut(s) 405
HaeII RGCGCY 3 cut(s) 285, 371, 377
HaeIII GGCC 5 cut(s) 71, 134, 249, 272, 746
HapII CCGG 7 cut(s) 159, 365, 371, 377, 410, 725, 743
HgaI GACGC 2 cut(s) 49, 236
HhaI GCGC 3 cut(s) 284, 370, 376
Hin1I GRCGYC 4 cut(s) 228, 282, 368, 374
Hin1II CATG 3 cut(s) 361, 556, 736
Hin6I GCGC 3 cut(s) 282, 368, 374
HinP1I GCGC 3 cut(s) 282, 368, 374
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HinfI GANTC 2 cut(s) 79, 418
HpaI GTTAAC 1 cut(s) 22
HpaII CCGG 7 cut(s) 159, 365, 371, 377, 410, 725, 743
HphI GGTGA 4 cut(s) 131, 148, 440, 638
Hpy166II GTNNAC 2 cut(s) 22, 580
Hpy188I TCNGA 3 cut(s) 62, 96, 148
Hpy8I GTNNAC 2 cut(s) 22, 580
Hpy99I CGWCG 3 cut(s) 43, 62, 713
HpyAV CCTTC 1 cut(s) 208
HpyCH4III ACNGT 2 cut(s) 119, 769
HpyCH4IV ACGT 4 cut(s) 18, 188, 393, 708
HpyCH4V TGCA 4 cut(s) 264, 386, 397, 500
HpyF10VI GCNNNNNNNGC 5 cut(s) 206, 215, 288, 725, 752
HpyF3I CTNAG 3 cut(s) 95, 210, 573
HpySE526I ACGT 4 cut(s) 18, 188, 393, 708
Hsp92I GRCGYC 4 cut(s) 228, 282, 368, 374
Hsp92II CATG 3 cut(s) 361, 556, 736
HspAI GCGC 3 cut(s) 282, 368, 374
KasI GGCGCC 3 cut(s) 281, 367, 373
KroI GCCGGC 3 cut(s) 364, 370, 376
KroNI GCCGGC 3 cut(s) 366, 372, 378
KspAI GTTAAC 1 cut(s) 22
Kzo9I GATC 2 cut(s) 123, 164
LmnI GCTCC 2 cut(s) 347, 760
Lsp1109I GCAGC 2 cut(s) 415, 437
LweI GCATC 2 cut(s) 463, 609
MaeI CTAG 1 cut(s) 294
MaeII ACGT 4 cut(s) 18, 188, 393, 708
MaeIII GTNAC 4 cut(s) 184, 548, 669, 704
MalI GATC 2 cut(s) 125, 166
MboI GATC 2 cut(s) 123, 164
MboII GAAGA 2 cut(s) 46, 676
MfeI CAATTG 1 cut(s) 750
MflI RGATCY 2 cut(s) 123, 164
MhlI GDGCHC 1 cut(s) 105
MluCI AATT 2 cut(s) 680, 750
Mly113I GGCGCC 3 cut(s) 282, 368, 374
MlyI GAGTC 2 cut(s) 73, 412
MmeI TCCRAC 1 cut(s) 40
MreI CGCCGGCG 2 cut(s) 364, 370
MroNI GCCGGC 3 cut(s) 364, 370, 376
MseI TTAA 1 cut(s) 21
MslI CAYNNNNRTG 1 cut(s) 617
MspA1I CMGCKG 1 cut(s) 428
MspI CCGG 7 cut(s) 159, 365, 371, 377, 410, 725, 743
MspR9I CCNGG 4 cut(s) 73, 269, 410, 725
MunI CAATTG 1 cut(s) 750
MvaI CCWGG 2 cut(s) 73, 269
MwoI GCNNNNNNNGC 5 cut(s) 206, 215, 288, 725, 752
NaeI GCCGGC 3 cut(s) 366, 372, 378
NarI GGCGCC 3 cut(s) 282, 368, 374
NciI CCSGG 2 cut(s) 410, 725
NdeII GATC 2 cut(s) 123, 164
NgoMIV GCCGGC 3 cut(s) 364, 370, 376
NlaIII CATG 3 cut(s) 361, 556, 736
NlaIV GGNNCC 5 cut(s) 283, 369, 375, 381, 723
NmeAIII GCCGAG 1 cut(s) 258
NmuCI GTSAC 2 cut(s) 184, 704
PaqCI CACCTGC 1 cut(s) 391
PdiI GCCGGC 3 cut(s) 366, 372, 378
PflMI CCANNNNNTGG 2 cut(s) 476, 598
PkrI GCNGC 5 cut(s) 208, 251, 290, 427, 430
PleI GAGTC 2 cut(s) 73, 412
PluTI GGCGCC 3 cut(s) 285, 371, 377
PmaCI CACGTG 1 cut(s) 394
PmlI CACGTG 1 cut(s) 394
PpsI GAGTC 2 cut(s) 73, 412
Ppu21I YACGTR 1 cut(s) 394
PshAI GACNNNNGTC 1 cut(s) 50
Psp1406I AACGTT 1 cut(s) 18
Psp6I CCWGG 2 cut(s) 71, 267
PspCI CACGTG 1 cut(s) 394
PspEI GGTNACC 1 cut(s) 669
PspFI CCCAGC 1 cut(s) 526
PspGI CCWGG 2 cut(s) 71, 267
PspN4I GGNNCC 5 cut(s) 283, 369, 375, 381, 723
PspPI GGNCC 3 cut(s) 354, 605, 721
PsrI GAACNNNNNNTAC 2 cut(s) 548, 580
PstNI CAGNNNCTG 1 cut(s) 428
PsuI RGATCY 2 cut(s) 123, 164
PvuII CAGCTG 1 cut(s) 428
RsaI GTAC 5 cut(s) 116, 404, 438, 581, 629
RsaNI GTAC 5 cut(s) 115, 403, 437, 580, 628
RseI CAYNNNNRTG 1 cut(s) 617
SaqAI TTAA 1 cut(s) 21
SatI GCNGC 5 cut(s) 207, 250, 289, 426, 429
Sau3AI GATC 2 cut(s) 123, 164
Sau96I GGNCC 3 cut(s) 354, 605, 721
SchI GAGTC 2 cut(s) 73, 412
ScrFI CCNGG 4 cut(s) 73, 269, 410, 725
SduI GDGCHC 1 cut(s) 105
SfaNI GCATC 2 cut(s) 463, 609
SfoI GGCGCC 3 cut(s) 283, 369, 375
SgrAI CRCCGGYG 2 cut(s) 364, 370
SinI GGWCC 3 cut(s) 354, 605, 721
SmiMI CAYNNNNRTG 1 cut(s) 617
Sse9I AATT 2 cut(s) 680, 750
SsiI CCGC 6 cut(s) 206, 250, 286, 289, 699, 719
SspDI GGCGCC 3 cut(s) 281, 367, 373
SspMI CTAG 1 cut(s) 294
StyD4I CCNGG 4 cut(s) 71, 267, 408, 723
StyI CCWWGG 4 cut(s) 48, 84, 168, 293
TaaI ACNGT 2 cut(s) 119, 769
TaiI ACGT 4 cut(s) 21, 191, 396, 711
TaqI TCGA 3 cut(s) 108, 305, 737
TasI AATT 2 cut(s) 680, 750
TauI GCSGC 3 cut(s) 209, 252, 291
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TscAI CASTG 2 cut(s) 544, 774
TseFI GTSAC 2 cut(s) 184, 704
TseI GCWGC 2 cut(s) 425, 428
Tsp45I GTSAC 2 cut(s) 184, 704
TspDTI ATGAA 2 cut(s) 434, 569
TspRI CASTG 2 cut(s) 544, 774
Van91I CCANNNNNTGG 2 cut(s) 476, 598
VpaK11BI GGWCC 3 cut(s) 354, 605, 721
XcmI CCANNNNNNNNNTGG 2 cut(s) 265, 599
XmaJI CCTAGG 1 cut(s) 293
XspI CTAG 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.