Rroxscaffold_4G00292570

RNA-binding protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
12841063 .. 12843709
2647 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00292570.1

Sequence Viewer

Length: 804 bp
ATGACAATGAGCAACAACGTTAACCAGTTCGGCGACACGACATTGACCAAAGTCTTCGTCGGAGGGCTGGCCTGGGAGACTCCCAAGGAGGCTCTGAGAGAGCACTTCGACAAGTACGGTGAGATCTTGGAGGCCGTCATCATCTCCGATAAGCTCACCGGCAGATCCAAGGGCTACGGCTTCGTGACGTTCAAGGAGGCTGAAGCGGCTAAGAAGGCTTGCGAGGACACCACGCCGGTCATCAACGGCCGCCGTGCCAACTGCAACCTGGCCTCGCTCGGGGCTCGCCGCCCTAGGTCGGCTTCCACCACCACTCCTCCTCCTCAACGAGTATCAAATGGTGGAGGACCAAGGTCTATGTCACCGGCGCCGGGGCCGGCGCCGGCACCTGCAAATCACGTGCAATGGTACTACCCGGCAGGGACTCCAGCAGCAGCTTCTGTACCATTTCATCACCAGCATCATCAGGCTGTTCCATTCTATGGATACTCCCCAACCTACATTGCAACTGATATGGGCTACAATCACAAGCTGGGATACAGTACTGGTGGGAGTTACATGAATGGGCATTACTCTCCTCAAGTGTACCATAGCCACCAGCCTATGGTTGGTCCAAACACATTGATGCCAATGTACCCTCTTTACCATTATCACCATCAATCACATACAATGGGGTTACCTGCCCAATTCTTCCCCCCAACCACCGCAGGTCACGTCGCAACGGTCCCGGCAATCATGTCAAAACCGGCCTCAATTGCTCCCAATAACACAGTATACCAAACAGTGTGCTTGGCTGTGGAATAG

Protein Analysis

267

Amino Acids

28.94

Weight (kDa)

9.02

Isoelectric Point (pI)

56.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 18 - 75 3.2e-17 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 397
Acc36I ACCTGC 3 cut(s) 397, 688, 698
AccB1I GGYRCC 3 cut(s) 367, 379, 385
AccB7I CCANNNNNTGG 2 cut(s) 482, 604
AccI GTMKAC 1 cut(s) 774
AciI CCGC 4 cut(s) 206, 250, 289, 705
AclI AACGTT 1 cut(s) 18
AclWI GGATC 1 cut(s) 159
AcoI YGGCCR 1 cut(s) 247
AcuI CTGAAG 1 cut(s) 222
AcvI CACGTG 1 cut(s) 400
AcyI GRCGYC 2 cut(s) 368, 380
AfaI GTAC 6 cut(s) 116, 410, 444, 544, 587, 635
AfiI CCNNNNNNNGG 6 cut(s) 279, 298, 371, 482, 604, 608
AgsI TTSAA 1 cut(s) 193
AjiI CACGTC 1 cut(s) 715
AjnI CCWGG 2 cut(s) 71, 267
AluBI AGCT 3 cut(s) 154, 437, 532
AluI AGCT 3 cut(s) 154, 437, 532
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 1 cut(s) 71
AlwI GGATC 1 cut(s) 159
AlwNI CAGNNNCTG 1 cut(s) 440
Ama87I CYCGRG 1 cut(s) 278
AoxI GGCC 6 cut(s) 69, 132, 247, 270, 374, 747
ApeKI GCWGC 2 cut(s) 431, 434
ArsI GACNNNNNNTTYG 2 cut(s) 42, 74
AspA2I CCTAGG 1 cut(s) 293
AspLEI GCGC 2 cut(s) 370, 382
AspS9I GGNCC 4 cut(s) 347, 374, 611, 724
AsuC2I CCSGG 3 cut(s) 372, 416, 728
AsuHPI GGTGA 5 cut(s) 131, 148, 354, 446, 644
AvaI CYCGRG 1 cut(s) 278
AvaII GGWCC 3 cut(s) 347, 611, 724
AvrII CCTAGG 1 cut(s) 293
BanI GGYRCC 3 cut(s) 367, 379, 385
BanII GRGCYC 1 cut(s) 286
BbrPI CACGTG 1 cut(s) 400
BbsI GAAGAC 1 cut(s) 46
Bbv12I GWGCWC 1 cut(s) 105
BbvI GCAGC 2 cut(s) 443, 446
BccI CCATC 1 cut(s) 663
BceAI ACGGC 4 cut(s) 119, 193, 237, 262
BciT130I CCWGG 2 cut(s) 73, 269
BciVI GTATCC 2 cut(s) 479, 530
BcnI CCSGG 3 cut(s) 372, 416, 728
BcoDI GTCTC 1 cut(s) 71
BfaI CTAG 1 cut(s) 294
BfoI RGCGCY 2 cut(s) 371, 383
BfuAI ACCTGC 3 cut(s) 397, 688, 698
BfuI GTATCC 2 cut(s) 479, 530
BglII AGATCT 1 cut(s) 123
BisI GCNGC 5 cut(s) 207, 250, 289, 432, 435
BlnI CCTAGG 1 cut(s) 293
BlsI GCNGC 5 cut(s) 208, 251, 290, 433, 436
BmcAI AGTACT 1 cut(s) 544
Bme1390I CCNGG 5 cut(s) 73, 269, 372, 416, 728
Bme18I GGWCC 3 cut(s) 347, 611, 724
BmeT110I CYCGRG 1 cut(s) 278
BmgBI CACGTC 1 cut(s) 715
BmgT120I GGNCC 4 cut(s) 347, 374, 611, 724
BmiI GGNNCC 5 cut(s) 369, 375, 381, 387, 726
BmrFI CCNGG 5 cut(s) 73, 269, 372, 416, 728
BmsI GCATC 2 cut(s) 469, 615
BoxI GACNNNNGTC 2 cut(s) 50, 352
BpiI GAAGAC 1 cut(s) 46
BpmI CTGGAG 1 cut(s) 411
BpuEI CTTGAG 1 cut(s) 564
BpuMI CCSGG 3 cut(s) 372, 416, 728
BsaAI YACGTR 1 cut(s) 400
BsaHI GRCGYC 2 cut(s) 368, 380
BsaJI CCNNGG 6 cut(s) 72, 84, 168, 293, 350, 371
BsaXI ACNNNNNCTCC 6 cut(s) 298, 301, 304, 328, 331, 334
Bsc4I CCNNNNNNNGG 6 cut(s) 279, 298, 371, 482, 604, 608
Bse118I RCCGGY 6 cut(s) 158, 235, 364, 376, 382, 745
Bse1I ACTGG 2 cut(s) 25, 550
Bse3DI GCAATG 2 cut(s) 410, 501
BseBI CCWGG 2 cut(s) 73, 269
BseDI CCNNGG 6 cut(s) 72, 84, 168, 293, 350, 371
BseLI CCNNNNNNNGG 6 cut(s) 279, 298, 371, 482, 604, 608
BseMI GCAATG 2 cut(s) 410, 501
BseMII CTCAG 1 cut(s) 86
BseNI ACTGG 2 cut(s) 25, 550
BseRI GAGGAG 4 cut(s) 306, 309, 312, 567
BseX3I CGGCCG 1 cut(s) 247
BseXI GCAGC 2 cut(s) 443, 446
BseYI CCCAGC 1 cut(s) 532
Bsh1285I CGRYCG 1 cut(s) 250
BshFI GGCC 6 cut(s) 71, 134, 249, 272, 376, 749
BshNI GGYRCC 3 cut(s) 367, 379, 385
BsiEI CGRYCG 1 cut(s) 250
BsiHKAI GWGCWC 1 cut(s) 105
BsiHKCI CYCGRG 1 cut(s) 278
BsiSI CCGG 9 cut(s) 159, 236, 365, 371, 377, 383, 416, 728, 746
BslFI GGGAC 2 cut(s) 436, 710
BslI CCNNNNNNNGG 6 cut(s) 279, 298, 371, 482, 604, 608
BsmAI GTCTC 1 cut(s) 71
BsmFI GGGAC 2 cut(s) 436, 710
BsnI GGCC 6 cut(s) 71, 134, 249, 272, 376, 749
BsoBI CYCGRG 1 cut(s) 278
Bsp1286I GDGCHC 2 cut(s) 105, 286
Bsp143I GATC 2 cut(s) 123, 164
BspACI CCGC 4 cut(s) 206, 250, 289, 705
BspANI GGCC 6 cut(s) 71, 134, 249, 272, 376, 749
BspCNI CTCAG 1 cut(s) 87
BspLI GGNNCC 5 cut(s) 369, 375, 381, 387, 726
BspMI ACCTGC 3 cut(s) 397, 688, 698
BspPI GGATC 1 cut(s) 159
BspT107I GGYRCC 3 cut(s) 367, 379, 385
BsrDI GCAATG 2 cut(s) 410, 501
BsrFI RCCGGY 6 cut(s) 158, 235, 364, 376, 382, 745
BsrI ACTGG 2 cut(s) 25, 550
BssAI RCCGGY 6 cut(s) 158, 235, 364, 376, 382, 745
BssECI CCNNGG 6 cut(s) 72, 84, 168, 293, 350, 371
BssMI GATC 2 cut(s) 123, 164
BssNAI GTATAC 1 cut(s) 775
BssNI GRCGYC 2 cut(s) 368, 380
BssT1I CCWWGG 4 cut(s) 84, 168, 293, 350
Bst1107I GTATAC 1 cut(s) 775
Bst2UI CCWGG 2 cut(s) 73, 269
Bst4CI ACNGT 5 cut(s) 119, 542, 724, 772, 784
BstACI GRCGYC 2 cut(s) 368, 380
BstBAI YACGTR 1 cut(s) 400
BstC8I GCNNGC 5 cut(s) 69, 220, 286, 378, 384
BstDEI CTNAG 2 cut(s) 95, 210
BstEII GGTNACC 1 cut(s) 675
BstH2I RGCGCY 2 cut(s) 371, 383
BstHHI GCGC 2 cut(s) 370, 382
BstKTI GATC 2 cut(s) 126, 167
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 2 cut(s) 123, 164
BstMCI CGRYCG 1 cut(s) 250
BstMWI GCNNNNNNNGC 3 cut(s) 206, 215, 755
BstNI CCWGG 2 cut(s) 73, 269
BstPAI GACNNNNGTC 2 cut(s) 50, 352
BstPI GGTNACC 1 cut(s) 675
BstSCI CCNGG 5 cut(s) 71, 267, 370, 414, 726
BstV1I GCAGC 2 cut(s) 443, 446
BstV2I GAAGAC 1 cut(s) 46
BstX2I RGATCY 2 cut(s) 123, 164
BstYI RGATCY 2 cut(s) 123, 164
BstZ17I GTATAC 1 cut(s) 775
BstZI CGGCCG 1 cut(s) 247
BsuI GTATCC 2 cut(s) 479, 530
BsuRI GGCC 6 cut(s) 71, 134, 249, 272, 376, 749
BtrI CACGTC 1 cut(s) 715
BtsIMutI CAGTG 1 cut(s) 789
BveI ACCTGC 3 cut(s) 397, 688, 698
Cac8I GCNNGC 5 cut(s) 69, 220, 286, 378, 384
CaiI CAGNNNCTG 1 cut(s) 440
CfoI GCGC 2 cut(s) 370, 382
Cfr10I RCCGGY 6 cut(s) 158, 235, 364, 376, 382, 745
Cfr13I GGNCC 4 cut(s) 347, 374, 611, 724
Csp6I GTAC 6 cut(s) 115, 409, 443, 543, 586, 634
CviAII CATG 2 cut(s) 559, 736
CviQI GTAC 6 cut(s) 115, 409, 443, 543, 586, 634
DdeI CTNAG 2 cut(s) 95, 210
DinI GGCGCC 2 cut(s) 369, 381
DpnI GATC 2 cut(s) 125, 166
DpnII GATC 2 cut(s) 123, 164
EaeI YGGCCR 1 cut(s) 247
EagI CGGCCG 1 cut(s) 247
EclXI CGGCCG 1 cut(s) 247
Eco130I CCWWGG 4 cut(s) 84, 168, 293, 350
Eco24I GRGCYC 1 cut(s) 286
Eco47I GGWCC 3 cut(s) 347, 611, 724
Eco52I CGGCCG 1 cut(s) 247
Eco57I CTGAAG 1 cut(s) 222
Eco72I CACGTG 1 cut(s) 400
Eco88I CYCGRG 1 cut(s) 278
Eco91I GGTNACC 1 cut(s) 675
EcoO65I GGTNACC 1 cut(s) 675
EcoRII CCWGG 2 cut(s) 71, 267
EcoT14I CCWWGG 4 cut(s) 84, 168, 293, 350
EcoT38I GRGCYC 1 cut(s) 286
EgeI GGCGCC 2 cut(s) 369, 381
EheI GGCGCC 2 cut(s) 369, 381
ErhI CCWWGG 4 cut(s) 84, 168, 293, 350
FaeI CATG 2 cut(s) 562, 739
FaiI YATR 9 cut(s) 359, 483, 515, 560, 591, 605, 666, 737, 775
FaqI GGGAC 2 cut(s) 436, 710
FatI CATG 2 cut(s) 558, 735
FblI GTMKAC 1 cut(s) 774
Fnu4HI GCNGC 5 cut(s) 207, 250, 289, 432, 435
FriOI GRGCYC 1 cut(s) 286
Fsp4HI GCNGC 5 cut(s) 207, 250, 289, 432, 435
FspBI CTAG 1 cut(s) 294
GlaI GCGC 2 cut(s) 369, 381
GluI GCNGC 5 cut(s) 207, 250, 289, 432, 435
GsaI CCCAGC 1 cut(s) 536
GsuI CTGGAG 1 cut(s) 411
HaeII RGCGCY 2 cut(s) 371, 383
HaeIII GGCC 6 cut(s) 71, 134, 249, 272, 376, 749
HapII CCGG 9 cut(s) 159, 236, 365, 371, 377, 383, 416, 728, 746
HhaI GCGC 2 cut(s) 370, 382
Hin1I GRCGYC 2 cut(s) 368, 380
Hin1II CATG 2 cut(s) 562, 739
Hin6I GCGC 2 cut(s) 368, 380
HinP1I GCGC 2 cut(s) 368, 380
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HinfI GANTC 2 cut(s) 79, 424
HpaI GTTAAC 1 cut(s) 22
HpaII CCGG 9 cut(s) 159, 236, 365, 371, 377, 383, 416, 728, 746
HphI GGTGA 5 cut(s) 131, 148, 354, 446, 644
Hpy166II GTNNAC 3 cut(s) 22, 586, 775
Hpy188I TCNGA 3 cut(s) 62, 96, 148
Hpy188III TCNNGA 1 cut(s) 184
Hpy8I GTNNAC 3 cut(s) 22, 586, 775
Hpy99I CGWCG 2 cut(s) 62, 719
HpyAV CCTTC 1 cut(s) 208
HpyCH4III ACNGT 5 cut(s) 119, 542, 724, 772, 784
HpyCH4IV ACGT 4 cut(s) 18, 188, 399, 714
HpyCH4V TGCA 4 cut(s) 264, 392, 403, 506
HpyF10VI GCNNNNNNNGC 3 cut(s) 206, 215, 755
HpyF3I CTNAG 2 cut(s) 95, 210
HpySE526I ACGT 4 cut(s) 18, 188, 399, 714
Hsp92I GRCGYC 2 cut(s) 368, 380
Hsp92II CATG 2 cut(s) 562, 739
HspAI GCGC 2 cut(s) 368, 380
KasI GGCGCC 2 cut(s) 367, 379
KroI GCCGGC 2 cut(s) 376, 382
KroNI GCCGGC 2 cut(s) 378, 384
KspAI GTTAAC 1 cut(s) 22
Kzo9I GATC 2 cut(s) 123, 164
LmnI GCTCC 1 cut(s) 763
Lsp1109I GCAGC 2 cut(s) 443, 446
LweI GCATC 2 cut(s) 469, 615
MaeI CTAG 1 cut(s) 294
MaeII ACGT 4 cut(s) 18, 188, 399, 714
MaeIII GTNAC 5 cut(s) 184, 360, 554, 675, 710
MalI GATC 2 cut(s) 125, 166
MboI GATC 2 cut(s) 123, 164
MboII GAAGA 2 cut(s) 46, 682
MfeI CAATTG 1 cut(s) 753
MflI RGATCY 2 cut(s) 123, 164
MhlI GDGCHC 2 cut(s) 105, 286
MluCI AATT 2 cut(s) 686, 753
Mly113I GGCGCC 2 cut(s) 368, 380
MlyI GAGTC 2 cut(s) 73, 418
MmeI TCCRAC 1 cut(s) 40
MroNI GCCGGC 2 cut(s) 376, 382
MseI TTAA 1 cut(s) 21
MslI CAYNNNNRTG 1 cut(s) 623
MspI CCGG 9 cut(s) 159, 236, 365, 371, 377, 383, 416, 728, 746
MspR9I CCNGG 5 cut(s) 73, 269, 372, 416, 728
MunI CAATTG 1 cut(s) 753
MvaI CCWGG 2 cut(s) 73, 269
MwoI GCNNNNNNNGC 3 cut(s) 206, 215, 755
NaeI GCCGGC 2 cut(s) 378, 384
NarI GGCGCC 2 cut(s) 368, 380
NciI CCSGG 3 cut(s) 372, 416, 728
NdeII GATC 2 cut(s) 123, 164
NgoMIV GCCGGC 2 cut(s) 376, 382
NlaIII CATG 2 cut(s) 562, 739
NlaIV GGNNCC 5 cut(s) 369, 375, 381, 387, 726
NmuCI GTSAC 3 cut(s) 184, 360, 710
PaqCI CACCTGC 1 cut(s) 397
PdiI GCCGGC 2 cut(s) 378, 384
PflMI CCANNNNNTGG 2 cut(s) 482, 604
PkrI GCNGC 5 cut(s) 208, 251, 290, 433, 436
PleI GAGTC 2 cut(s) 73, 418
PluTI GGCGCC 2 cut(s) 371, 383
PmaCI CACGTG 1 cut(s) 400
PmlI CACGTG 1 cut(s) 400
PpsI GAGTC 2 cut(s) 73, 418
Ppu21I YACGTR 1 cut(s) 400
PshAI GACNNNNGTC 2 cut(s) 50, 352
Psp1406I AACGTT 1 cut(s) 18
Psp6I CCWGG 2 cut(s) 71, 267
PspCI CACGTG 1 cut(s) 400
PspEI GGTNACC 1 cut(s) 675
PspFI CCCAGC 1 cut(s) 532
PspGI CCWGG 2 cut(s) 71, 267
PspN4I GGNNCC 5 cut(s) 369, 375, 381, 387, 726
PspPI GGNCC 4 cut(s) 347, 374, 611, 724
PstNI CAGNNNCTG 1 cut(s) 440
PsuI RGATCY 2 cut(s) 123, 164
RsaI GTAC 6 cut(s) 116, 410, 444, 544, 587, 635
RsaNI GTAC 6 cut(s) 115, 409, 443, 543, 586, 634
RseI CAYNNNNRTG 1 cut(s) 623
SaqAI TTAA 1 cut(s) 21
SatI GCNGC 5 cut(s) 207, 250, 289, 432, 435
Sau3AI GATC 2 cut(s) 123, 164
Sau96I GGNCC 4 cut(s) 347, 374, 611, 724
ScaI AGTACT 1 cut(s) 544
SchI GAGTC 2 cut(s) 73, 418
ScrFI CCNGG 5 cut(s) 73, 269, 372, 416, 728
SduI GDGCHC 2 cut(s) 105, 286
SfaNI GCATC 2 cut(s) 469, 615
SfoI GGCGCC 2 cut(s) 369, 381
SgrAI CRCCGGYG 1 cut(s) 364
SinI GGWCC 3 cut(s) 347, 611, 724
SmiMI CAYNNNNRTG 1 cut(s) 623
SmlI CTYRAG 1 cut(s) 579
SmoI CTYRAG 1 cut(s) 579
Sse9I AATT 2 cut(s) 686, 753
SsiI CCGC 4 cut(s) 206, 250, 289, 705
SspDI GGCGCC 2 cut(s) 367, 379
SspMI CTAG 1 cut(s) 294
StyD4I CCNGG 5 cut(s) 71, 267, 370, 414, 726
StyI CCWWGG 4 cut(s) 84, 168, 293, 350
TaaI ACNGT 5 cut(s) 119, 542, 724, 772, 784
TaiI ACGT 4 cut(s) 21, 191, 402, 717
TaqI TCGA 1 cut(s) 108
TasI AATT 2 cut(s) 686, 753
TatI WGTACW 1 cut(s) 542
TauI GCSGC 3 cut(s) 209, 252, 291
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TscAI CASTG 1 cut(s) 789
TseFI GTSAC 3 cut(s) 184, 360, 710
TseI GCWGC 2 cut(s) 431, 434
Tsp45I GTSAC 3 cut(s) 184, 360, 710
TspDTI ATGAA 2 cut(s) 440, 575
TspRI CASTG 1 cut(s) 789
Van91I CCANNNNNTGG 2 cut(s) 482, 604
VpaK11BI GGWCC 3 cut(s) 347, 611, 724
XcmI CCANNNNNNNNNTGG 2 cut(s) 265, 605
XmaJI CCTAGG 1 cut(s) 293
XmiI GTMKAC 1 cut(s) 774
XspI CTAG 1 cut(s) 294
ZrmI AGTACT 1 cut(s) 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.