Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0006332

Physical Location & Seq

Genomic Coordinates Reverse (-)

14351798 .. 14353483

Gene Structure 1686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g14080.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGTCACCTGCAAATCACGTGCAGTGGTACTACCCAGCACCAACAGGGACTCCGACGACTACCCCATTCCACCACCAGCATCACCAGGCCGTTCCATTTTATGGCTACTCCCCCACATACATTGCTCATGATATGAGTTACCATCATAAGATGGGCCACACAGGTGCAGCTTACATGAACGGCCCCTACTCTGCTGCTCAAGTGTACCCAGCACAGCCTATGGTGGGACACAACACTTTGATGCCAATGTATCCTCTCTACCATTACCACCATCATCACCAATCACATACAATGGGCTTACCTGCTCACATCTACTCGCCAACCACGGCCGGACATGTGGCCGCAGTCCCAACCATCATGTCCAAACCAGCATCCATTGCTCCTAACACAGTGTGCTTGGCTGTGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010029 GO:0010033 GO:0010035 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0097159 GO:0097305 GO:1900140 GO:1901363 GO:1901700 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

137

Amino Acids

15.05

Weight (kDa)

7.35

Isoelectric Point (pI)

69.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54770 AT3G54770 AT3G54770
fragaria_vesca	FvH4_7g20260 FvH4_7g20260 FvH4_7g20260 FvH4_7g20260
malus_domestica	MD01G1112300.v1.1 MD07G1180100.v1.1
prunus_persica	Prupe.2G219600_v2.0.a1 Prupe.2G219600_v2.0.a1 Prupe.2G219600_v2.0.a1
pyrus_communis	pycom01g14080 pycom07g17340
rosa_chinensis	RchiOBHm_Chr1g0364201
rosa_laevigata	RLG00000027506
rosa_multiflora	Rmu_sc0000071.1_g000004
rosa_roxburghii	Rroxscaffold_4G00292570
rosa_rugosa	Rorug01G0314600.1 Rorug01G0314700 Rorug01G0314700 Rorug01G0314800
rosa_samantha	Rh1AG322100 Rh1BG284900 Rh1CG301400 Rh1DG316300
rosa_wichuraiana	Rw1G028530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	16
Acc36I	ACCTGC	2 cut(s)	16, 310
AccB7I	CCANNNNNTGG	1 cut(s)	101
AciI	CCGC	1 cut(s)	342
AcoI	YGGCCR	2 cut(s)	327, 339
AcvI	CACGTG	1 cut(s)	19
AdeI	CACNNNGTG	1 cut(s)	393
AfaI	GTAC	2 cut(s)	29, 206
AfiI	CCNNNNNNNGG	2 cut(s)	101, 224
AflIII	ACRYGT	1 cut(s)	334
AjnI	CCWGG	1 cut(s)	84
AleI	CACNNNNGTG	1 cut(s)	162
AluBI	AGCT	1 cut(s)	170
AluI	AGCT	1 cut(s)	170
AoxI	GGCC	5 cut(s)	87, 154, 181, 327, 339
ApeKI	GCWGC	2 cut(s)	167, 194
AspS9I	GGNCC	2 cut(s)	154, 182
AsuHPI	GGTGA	2 cut(s)	74, 269
BbrPI	CACGTG	1 cut(s)	19
BbvI	GCAGC	2 cut(s)	179, 181
BccI	CCATC	4 cut(s)	145, 150, 279, 362
BceAI	ACGGC	3 cut(s)	74, 196, 342
BciT130I	CCWGG	1 cut(s)	86
BciVI	GTATCC	1 cut(s)	261
BfuAI	ACCTGC	2 cut(s)	16, 310
BfuI	GTATCC	1 cut(s)	261
BisI	GCNGC	3 cut(s)	168, 195, 342
BlsI	GCNGC	3 cut(s)	169, 196, 343
Bme1390I	CCNGG	1 cut(s)	86
BmgT120I	GGNCC	2 cut(s)	154, 182
BmiI	GGNNCC	1 cut(s)	184
BmrFI	CCNGG	1 cut(s)	86
BmsI	GCATC	3 cut(s)	88, 231, 380
BpuEI	CTTGAG	1 cut(s)	183
BsaAI	YACGTR	1 cut(s)	19
BsaJI	CCNNGG	1 cut(s)	324
BsaXI	ACNNNNNCTCC	2 cut(s)	34, 64
Bsc4I	CCNNNNNNNGG	2 cut(s)	101, 224
Bse3DI	GCAATG	2 cut(s)	120, 375
BseBI	CCWGG	1 cut(s)	86
BseDI	CCNNGG	1 cut(s)	324
BseGI	GGATG	1 cut(s)	371
BseLI	CCNNNNNNNGG	2 cut(s)	101, 224
BseMI	GCAATG	2 cut(s)	120, 375
BseX3I	CGGCCG	1 cut(s)	327
BseXI	GCAGC	2 cut(s)	179, 181
BseYI	CCCAGC	2 cut(s)	34, 208
BsgI	GTGCAG	2 cut(s)	41, 186
Bsh1285I	CGRYCG	1 cut(s)	330
BshFI	GGCC	5 cut(s)	89, 156, 183, 329, 341
BsiEI	CGRYCG	1 cut(s)	330
BsiSI	CCGG	1 cut(s)	330
BslFI	GGGAC	3 cut(s)	61, 240, 332
BslI	CCNNNNNNNGG	2 cut(s)	101, 224
BsmFI	GGGAC	3 cut(s)	61, 240, 332
BsnI	GGCC	5 cut(s)	89, 156, 183, 329, 341
BspACI	CCGC	1 cut(s)	342
BspANI	GGCC	5 cut(s)	89, 156, 183, 329, 341
BspHI	TCATGA	1 cut(s)	127
BspLI	GGNNCC	1 cut(s)	184
BspMI	ACCTGC	2 cut(s)	16, 310
BsrDI	GCAATG	2 cut(s)	120, 375
BssECI	CCNNGG	1 cut(s)	324
Bst2UI	CCWGG	1 cut(s)	86
Bst4CI	ACNGT	1 cut(s)	391
BstAPI	GCANNNNNTGC	1 cut(s)	377
BstBAI	YACGTR	1 cut(s)	19
BstDSI	CCRYGG	1 cut(s)	324
BstF5I	GGATG	1 cut(s)	371
BstMCI	CGRYCG	1 cut(s)	330
BstMWI	GCNNNNNNNGC	1 cut(s)	377
BstNI	CCWGG	1 cut(s)	86
BstNSI	RCATGY	1 cut(s)	338
BstSCI	CCNGG	1 cut(s)	84
BstV1I	GCAGC	2 cut(s)	179, 181
BstZI	CGGCCG	1 cut(s)	327
BsuI	GTATCC	1 cut(s)	261
BsuRI	GGCC	5 cut(s)	89, 156, 183, 329, 341
BtgI	CCRYGG	1 cut(s)	324
BtsCI	GGATG	1 cut(s)	371
BtsI	GCAGTG	1 cut(s)	29
BtsIMutI	CAGTG	2 cut(s)	29, 396
BveI	ACCTGC	2 cut(s)	16, 310
CciI	TCATGA	1 cut(s)	127
Cfr13I	GGNCC	2 cut(s)	154, 182
Csp6I	GTAC	2 cut(s)	28, 205
CspCI	CAANNNNNGTGG	2 cut(s)	103, 138
CviAII	CATG	4 cut(s)	128, 175, 335, 358
CviQI	GTAC	2 cut(s)	28, 205
DraIII	CACNNNGTG	1 cut(s)	393
EaeI	YGGCCR	2 cut(s)	327, 339
EagI	CGGCCG	1 cut(s)	327
EclXI	CGGCCG	1 cut(s)	327
Eco52I	CGGCCG	1 cut(s)	327
Eco72I	CACGTG	1 cut(s)	19
EcoRII	CCWGG	1 cut(s)	84
FaeI	CATG	4 cut(s)	131, 178, 338, 361
FaqI	GGGAC	3 cut(s)	61, 240, 332
FatI	CATG	4 cut(s)	127, 174, 334, 357
Fnu4HI	GCNGC	3 cut(s)	168, 195, 342
FokI	GGATG	1 cut(s)	358
Fsp4HI	GCNGC	3 cut(s)	168, 195, 342
GluI	GCNGC	3 cut(s)	168, 195, 342
GsaI	CCCAGC	2 cut(s)	38, 212
HaeIII	GGCC	5 cut(s)	89, 156, 183, 329, 341
HapII	CCGG	1 cut(s)	330
Hin1II	CATG	4 cut(s)	131, 178, 338, 361
HinfI	GANTC	1 cut(s)	49
HpaII	CCGG	1 cut(s)	330
HphI	GGTGA	2 cut(s)	74, 269
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	1 cut(s)	54
Hpy188III	TCNNGA	1 cut(s)	128
Hpy8I	GTNNAC	1 cut(s)	205
Hpy99I	CGWCG	1 cut(s)	58
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	3 cut(s)	11, 22, 167
HpyF10VI	GCNNNNNNNGC	1 cut(s)	377
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	4 cut(s)	131, 178, 338, 361
LmnI	GCTCC	1 cut(s)	385
Lsp1109I	GCAGC	2 cut(s)	179, 181
LweI	GCATC	3 cut(s)	88, 231, 380
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	2 cut(s)	3, 137
MlyI	GAGTC	1 cut(s)	43
MmeI	TCCRAC	1 cut(s)	77
MnlI	CCTC	1 cut(s)	264
MslI	CAYNNNNRTG	2 cut(s)	162, 239
MspI	CCGG	1 cut(s)	330
MspR9I	CCNGG	1 cut(s)	86
MvaI	CCWGG	1 cut(s)	86
MwoI	GCNNNNNNNGC	1 cut(s)	377
NlaIII	CATG	4 cut(s)	131, 178, 338, 361
NlaIV	GGNNCC	1 cut(s)	184
NmuCI	GTSAC	1 cut(s)	3
NspI	RCATGY	1 cut(s)	338
OliI	CACNNNNGTG	1 cut(s)	162
PagI	TCATGA	1 cut(s)	127
PaqCI	CACCTGC	1 cut(s)	16
PciI	ACATGT	1 cut(s)	334
PflMI	CCANNNNNTGG	1 cut(s)	101
PkrI	GCNGC	3 cut(s)	169, 196, 343
PleI	GAGTC	1 cut(s)	43
PmaCI	CACGTG	1 cut(s)	19
PmlI	CACGTG	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	43
Ppu21I	YACGTR	1 cut(s)	19
PscI	ACATGT	1 cut(s)	334
Psp6I	CCWGG	1 cut(s)	84
PspCI	CACGTG	1 cut(s)	19
PspFI	CCCAGC	2 cut(s)	34, 208
PspGI	CCWGG	1 cut(s)	84
PspN4I	GGNNCC	1 cut(s)	184
PspPI	GGNCC	2 cut(s)	154, 182
PsrI	GAACNNNNNNTAC	2 cut(s)	170, 202
RsaI	GTAC	2 cut(s)	29, 206
RsaNI	GTAC	2 cut(s)	28, 205
RseI	CAYNNNNRTG	2 cut(s)	162, 239
SatI	GCNGC	3 cut(s)	168, 195, 342
Sau96I	GGNCC	2 cut(s)	154, 182
SchI	GAGTC	1 cut(s)	43
ScrFI	CCNGG	1 cut(s)	86
SetI	ASST	5 cut(s)	10, 21, 166, 172, 304
SfaNI	GCATC	3 cut(s)	88, 231, 380
SmiMI	CAYNNNNRTG	2 cut(s)	162, 239
SmlI	CTYRAG	1 cut(s)	198
SmoI	CTYRAG	1 cut(s)	198
SsiI	CCGC	1 cut(s)	342
StyD4I	CCNGG	1 cut(s)	84
TaaI	ACNGT	1 cut(s)	391
TaiI	ACGT	1 cut(s)	21
TauI	GCSGC	1 cut(s)	344
TscAI	CASTG	2 cut(s)	29, 396
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	2 cut(s)	167, 194
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	1 cut(s)	191
TspRI	CASTG	2 cut(s)	29, 396
Van91I	CCANNNNNTGG	1 cut(s)	101
XceI	RCATGY	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.