Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0006332

Physical Location & Seq

Genomic Coordinates Reverse (-)

25939758 .. 25942757

Gene Structure 3000 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1180100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGACAATGAGCAACAACGTTACTCATGGGCAGTTTGGTGACACCACACTGACCAAAGTCTTTGTCGGAGGGTTGGCGTGGGAGACTCCCAAAGAGGCCTTGAGAGAGCACTTCGACAAGTACGGCGAGATCTTGGAGGCCGTCATCATCTCCGACAAACTCACCGGCCGATCCAAGGGTTACGGTTTCGTCACCTTCAAGGAGCCGGAGGAGGCTAAGAAGGCTTGTGAGGACGCCACTCCGGTCATCAACGGCCGCCGTGCCAACTGCAACCTCGCTTCCCTCGGGGCTCGCCGCCCTAGGTCCGCTTCAAACACCACCCCTCCTCCTCAACGAGGATCCAACGGTGGCGGAGCGAGGTCCATGTCACCTGCTCCCGCACCTGCACCTGCAAATCACGTGCAGTGGTACTACCCAGCACCAACAGGGACTCCAGCTACACCATTCTACCACCAGCATCACCAGGCTGTTCCATTTTATGGCTACTCCCCCACATACATTGCTGCTGATATGAGTTACAATCATGTGGGCTACACAGGTGGAGCTTACATGAACGGGCATTACTCTGCTCCTCAAGTGTACCCAGCACAGCCAATGGTCGGACACAACACTCTGATGCCAATGTACCCTCTCTACTACCACCATCACCATCAATCACATACAATGGGCTTACCTGCTCACATCTACTCGCCGACCATGGCCGGACACGTGGCCGCCGTCCCGACCATCATGTCCAAACCAGCATCGATTGCTCCTAACACAGTGTGCTTGGCTGTGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010029 GO:0010033 GO:0010035 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0097159 GO:0097305 GO:1900140 GO:1901363 GO:1901700 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

261

Amino Acids

28.18

Weight (kDa)

8.65

Isoelectric Point (pI)

62.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	20 - 77	7.3e-18	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54770 AT3G54770 AT3G54770
fragaria_vesca	FvH4_7g20260 FvH4_7g20260 FvH4_7g20260 FvH4_7g20260
malus_domestica	MD01G1112300.v1.1 MD07G1180100.v1.1
prunus_persica	Prupe.2G219600_v2.0.a1 Prupe.2G219600_v2.0.a1 Prupe.2G219600_v2.0.a1
pyrus_communis	pycom01g14080 pycom07g17340
rosa_chinensis	RchiOBHm_Chr1g0364201
rosa_laevigata	RLG00000027506
rosa_multiflora	Rmu_sc0000071.1_g000004
rosa_roxburghii	Rroxscaffold_4G00292570
rosa_rugosa	Rorug01G0314600.1 Rorug01G0314700 Rorug01G0314700 Rorug01G0314800
rosa_samantha	Rh1AG322100 Rh1BG284900 Rh1CG301400 Rh1DG316300
rosa_wichuraiana	Rw1G028530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	379, 391, 397
AasI	GACNNNNNNGTC	1 cut(s)	730
Acc36I	ACCTGC	4 cut(s)	379, 391, 397, 682
AccB7I	CCANNNNNTGG	1 cut(s)	479
AciI	CCGC	6 cut(s)	256, 295, 306, 351, 378, 714
AclI	AACGTT	1 cut(s)	18
AclWI	GGATC	3 cut(s)	165, 333, 346
AcoI	YGGCCR	4 cut(s)	166, 253, 699, 711
AcvI	CACGTG	2 cut(s)	400, 709
AcyI	GRCGYC	1 cut(s)	234
AdeI	CACNNNGTG	1 cut(s)	765
AfaI	GTAC	4 cut(s)	122, 410, 581, 626
AfiI	CCNNNNNNNGG	4 cut(s)	175, 335, 479, 599
AflIII	ACRYGT	1 cut(s)	706
AgsI	TTSAA	2 cut(s)	199, 312
AjnI	CCWGG	1 cut(s)	462
AluBI	AGCT	2 cut(s)	437, 545
AluI	AGCT	2 cut(s)	437, 545
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	1 cut(s)	77
AlwI	GGATC	3 cut(s)	165, 333, 346
Ama87I	CYCGRG	1 cut(s)	284
AoxI	GGCC	6 cut(s)	96, 138, 166, 253, 699, 711
ApeKI	GCWGC	1 cut(s)	503
ArsI	GACNNNNNNTTYG	2 cut(s)	48, 80
AspA2I	CCTAGG	1 cut(s)	299
AspS9I	GGNCC	2 cut(s)	303, 360
AsuHPI	GGTGA	6 cut(s)	50, 154, 184, 360, 452, 638
AvaI	CYCGRG	1 cut(s)	284
AvaII	GGWCC	2 cut(s)	303, 360
AvrII	CCTAGG	1 cut(s)	299
BamHI	GGATCC	1 cut(s)	338
BanII	GRGCYC	1 cut(s)	292
BbrPI	CACGTG	2 cut(s)	400, 709
Bbv12I	GWGCWC	1 cut(s)	111
BbvI	GCAGC	1 cut(s)	490
BccI	CCATC	3 cut(s)	651, 657, 734
BceAI	ACGGC	5 cut(s)	125, 139, 243, 268, 701
BciT130I	CCWGG	1 cut(s)	464
BcoDI	GTCTC	1 cut(s)	77
BfaI	CTAG	1 cut(s)	300
BfuAI	ACCTGC	4 cut(s)	379, 391, 397, 682
BglII	AGATCT	1 cut(s)	129
BisI	GCNGC	4 cut(s)	256, 295, 504, 714
BlnI	CCTAGG	1 cut(s)	299
BlsI	GCNGC	4 cut(s)	257, 296, 505, 715
Bme1390I	CCNGG	1 cut(s)	464
Bme18I	GGWCC	2 cut(s)	303, 360
BmeT110I	CYCGRG	1 cut(s)	284
BmgT120I	GGNCC	2 cut(s)	303, 360
BmiI	GGNNCC	2 cut(s)	204, 340
BmrFI	CCNGG	1 cut(s)	464
BmsI	GCATC	3 cut(s)	466, 606, 752
BoxI	GACNNNNGTC	1 cut(s)	56
BpmI	CTGGAG	1 cut(s)	417
BpuEI	CTTGAG	2 cut(s)	121, 558
Bsa29I	ATCGAT	1 cut(s)	746
BsaAI	YACGTR	2 cut(s)	400, 709
BsaHI	GRCGYC	1 cut(s)	234
BsaJI	CCNNGG	4 cut(s)	174, 283, 299, 696
BsaWI	WCCGGW	1 cut(s)	241
BsaXI	ACNNNNNCTCC	6 cut(s)	307, 310, 337, 340, 415, 445
Bsc4I	CCNNNNNNNGG	4 cut(s)	175, 335, 479, 599
Bse118I	RCCGGY	1 cut(s)	164
Bse3DI	GCAATG	1 cut(s)	498
BseBI	CCWGG	1 cut(s)	464
BseCI	ATCGAT	1 cut(s)	746
BseDI	CCNNGG	4 cut(s)	174, 283, 299, 696
BseLI	CCNNNNNNNGG	4 cut(s)	175, 335, 479, 599
BseMI	GCAATG	1 cut(s)	498
BseRI	GAGGAG	4 cut(s)	224, 315, 318, 561
BseX3I	CGGCCG	2 cut(s)	166, 253
BseXI	GCAGC	1 cut(s)	490
BseYI	CCCAGC	2 cut(s)	415, 583
BsgI	GTGCAG	2 cut(s)	369, 422
Bsh1285I	CGRYCG	2 cut(s)	169, 256
BshFI	GGCC	6 cut(s)	98, 140, 168, 255, 701, 713
BshVI	ATCGAT	1 cut(s)	746
BsiEI	CGRYCG	2 cut(s)	169, 256
BsiHKAI	GWGCWC	1 cut(s)	111
BsiHKCI	CYCGRG	1 cut(s)	284
BsiSI	CCGG	4 cut(s)	165, 206, 242, 702
BslFI	GGGAC	2 cut(s)	442, 704
BslI	CCNNNNNNNGG	4 cut(s)	175, 335, 479, 599
BsmAI	GTCTC	1 cut(s)	77
BsmFI	GGGAC	2 cut(s)	442, 704
BsnI	GGCC	6 cut(s)	98, 140, 168, 255, 701, 713
BsoBI	CYCGRG	1 cut(s)	284
Bsp1286I	GDGCHC	2 cut(s)	111, 292
Bsp143I	GATC	3 cut(s)	129, 170, 338
Bsp19I	CCATGG	1 cut(s)	696
BspACI	CCGC	6 cut(s)	256, 295, 306, 351, 378, 714
BspANI	GGCC	6 cut(s)	98, 140, 168, 255, 701, 713
BspDI	ATCGAT	1 cut(s)	746
BspLI	GGNNCC	2 cut(s)	204, 340
BspMI	ACCTGC	4 cut(s)	379, 391, 397, 682
BspPI	GGATC	3 cut(s)	165, 333, 346
BsrDI	GCAATG	1 cut(s)	498
BsrFI	RCCGGY	1 cut(s)	164
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	4 cut(s)	174, 283, 299, 696
BssMI	GATC	3 cut(s)	129, 170, 338
BssNI	GRCGYC	1 cut(s)	234
BssT1I	CCWWGG	3 cut(s)	174, 299, 696
Bst2UI	CCWGG	1 cut(s)	464
Bst4CI	ACNGT	3 cut(s)	185, 347, 763
BstACI	GRCGYC	1 cut(s)	234
BstAPI	GCANNNNNTGC	1 cut(s)	749
BstBAI	YACGTR	2 cut(s)	400, 709
BstC8I	GCNNGC	1 cut(s)	292
BstDEI	CTNAG	1 cut(s)	216
BstDSI	CCRYGG	1 cut(s)	696
BstENI	CCTNNNNNAGG	1 cut(s)	333
BstKTI	GATC	3 cut(s)	132, 173, 341
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	3 cut(s)	129, 170, 338
BstMCI	CGRYCG	2 cut(s)	169, 256
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 749
BstNI	CCWGG	1 cut(s)	464
BstPAI	GACNNNNGTC	1 cut(s)	56
BstSCI	CCNGG	1 cut(s)	462
BstV1I	GCAGC	1 cut(s)	490
BstX2I	RGATCY	2 cut(s)	129, 338
BstYI	RGATCY	2 cut(s)	129, 338
BstZI	CGGCCG	2 cut(s)	166, 253
Bsu15I	ATCGAT	1 cut(s)	746
BsuRI	GGCC	6 cut(s)	98, 140, 168, 255, 701, 713
BsuTUI	ATCGAT	1 cut(s)	746
BtgI	CCRYGG	1 cut(s)	696
BtsI	GCAGTG	1 cut(s)	410
BtsIMutI	CAGTG	3 cut(s)	47, 410, 768
BveI	ACCTGC	4 cut(s)	379, 391, 397, 682
Cac8I	GCNNGC	1 cut(s)	292
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	2 cut(s)	303, 360
ClaI	ATCGAT	1 cut(s)	746
CseI	GACGC	1 cut(s)	242
Csp6I	GTAC	4 cut(s)	121, 409, 580, 625
CspCI	CAANNNNNGTGG	2 cut(s)	481, 516
CviAII	CATG	6 cut(s)	26, 364, 524, 550, 697, 730
CviQI	GTAC	4 cut(s)	121, 409, 580, 625
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	3 cut(s)	131, 172, 340
DpnII	GATC	3 cut(s)	129, 170, 338
DraIII	CACNNNGTG	1 cut(s)	765
DrdI	GACNNNNNNGTC	1 cut(s)	730
DseDI	GACNNNNNNGTC	1 cut(s)	730
EaeI	YGGCCR	4 cut(s)	166, 253, 699, 711
EagI	CGGCCG	2 cut(s)	166, 253
EciI	GGCGGA	1 cut(s)	366
EclXI	CGGCCG	2 cut(s)	166, 253
Eco130I	CCWWGG	3 cut(s)	174, 299, 696
Eco147I	AGGCCT	1 cut(s)	98
Eco24I	GRGCYC	1 cut(s)	292
Eco47I	GGWCC	2 cut(s)	303, 360
Eco52I	CGGCCG	2 cut(s)	166, 253
Eco72I	CACGTG	2 cut(s)	400, 709
Eco88I	CYCGRG	1 cut(s)	284
EcoNI	CCTNNNNNAGG	1 cut(s)	333
EcoRII	CCWGG	1 cut(s)	462
EcoT14I	CCWWGG	3 cut(s)	174, 299, 696
EcoT38I	GRGCYC	1 cut(s)	292
ErhI	CCWWGG	3 cut(s)	174, 299, 696
FaeI	CATG	6 cut(s)	29, 367, 527, 553, 700, 733
FaqI	GGGAC	2 cut(s)	442, 704
FatI	CATG	6 cut(s)	25, 363, 523, 549, 696, 729
FauI	CCCGC	1 cut(s)	385
Fnu4HI	GCNGC	4 cut(s)	256, 295, 504, 714
FriOI	GRGCYC	1 cut(s)	292
Fsp4HI	GCNGC	4 cut(s)	256, 295, 504, 714
FspBI	CTAG	1 cut(s)	300
GluI	GCNGC	4 cut(s)	256, 295, 504, 714
GsaI	CCCAGC	2 cut(s)	419, 587
GsuI	CTGGAG	1 cut(s)	417
HaeIII	GGCC	6 cut(s)	98, 140, 168, 255, 701, 713
HapII	CCGG	4 cut(s)	165, 206, 242, 702
HgaI	GACGC	1 cut(s)	242
Hin1I	GRCGYC	1 cut(s)	234
Hin1II	CATG	6 cut(s)	29, 367, 527, 553, 700, 733
HinfI	GANTC	2 cut(s)	85, 430
HpaII	CCGG	4 cut(s)	165, 206, 242, 702
HphI	GGTGA	6 cut(s)	50, 154, 184, 360, 452, 638
Hpy166II	GTNNAC	1 cut(s)	580
Hpy188I	TCNGA	4 cut(s)	68, 154, 602, 615
Hpy188III	TCNNGA	1 cut(s)	721
Hpy8I	GTNNAC	1 cut(s)	580
HpyAV	CCTTC	2 cut(s)	205, 214
HpyCH4III	ACNGT	3 cut(s)	185, 347, 763
HpyCH4IV	ACGT	3 cut(s)	18, 399, 708
HpyCH4V	TGCA	4 cut(s)	270, 386, 392, 403
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 749
HpyF3I	CTNAG	1 cut(s)	216
HpySE526I	ACGT	3 cut(s)	18, 399, 708
Hsp92I	GRCGYC	1 cut(s)	234
Hsp92II	CATG	6 cut(s)	29, 367, 527, 553, 700, 733
Kzo9I	GATC	3 cut(s)	129, 170, 338
LmnI	GCTCC	6 cut(s)	202, 353, 379, 542, 574, 757
Lsp1109I	GCAGC	1 cut(s)	490
LweI	GCATC	3 cut(s)	466, 606, 752
MaeI	CTAG	1 cut(s)	300
MaeII	ACGT	3 cut(s)	18, 399, 708
MaeIII	GTNAC	6 cut(s)	19, 38, 179, 190, 366, 515
MalI	GATC	3 cut(s)	131, 172, 340
MboI	GATC	3 cut(s)	129, 170, 338
MflI	RGATCY	2 cut(s)	129, 338
MhlI	GDGCHC	2 cut(s)	111, 292
MlyI	GAGTC	2 cut(s)	79, 424
MmeI	TCCRAC	4 cut(s)	46, 177, 366, 580
MslI	CAYNNNNRTG	1 cut(s)	614
MspI	CCGG	4 cut(s)	165, 206, 242, 702
MspR9I	CCNGG	1 cut(s)	464
MvaI	CCWGG	1 cut(s)	464
MwoI	GCNNNNNNNGC	2 cut(s)	221, 749
NcoI	CCATGG	1 cut(s)	696
NdeII	GATC	3 cut(s)	129, 170, 338
NlaIII	CATG	6 cut(s)	29, 367, 527, 553, 700, 733
NlaIV	GGNNCC	2 cut(s)	204, 340
NmuCI	GTSAC	3 cut(s)	38, 190, 366
PaqCI	CACCTGC	3 cut(s)	379, 391, 397
PceI	AGGCCT	1 cut(s)	98
PcsI	WCGNNNNNNNCGW	1 cut(s)	714
PflMI	CCANNNNNTGG	1 cut(s)	479
PkrI	GCNGC	4 cut(s)	257, 296, 505, 715
PleI	GAGTC	2 cut(s)	79, 424
PmaCI	CACGTG	2 cut(s)	400, 709
PmlI	CACGTG	2 cut(s)	400, 709
PpsI	GAGTC	2 cut(s)	79, 424
Ppu21I	YACGTR	2 cut(s)	400, 709
PshAI	GACNNNNGTC	1 cut(s)	56
Psp1406I	AACGTT	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	462
PspCI	CACGTG	2 cut(s)	400, 709
PspFI	CCCAGC	2 cut(s)	415, 583
PspGI	CCWGG	1 cut(s)	462
PspN4I	GGNNCC	2 cut(s)	204, 340
PspPI	GGNCC	2 cut(s)	303, 360
PsrI	GAACNNNNNNTAC	2 cut(s)	545, 577
PsuI	RGATCY	2 cut(s)	129, 338
RsaI	GTAC	4 cut(s)	122, 410, 581, 626
RsaNI	GTAC	4 cut(s)	121, 409, 580, 625
RseI	CAYNNNNRTG	1 cut(s)	614
SatI	GCNGC	4 cut(s)	256, 295, 504, 714
Sau3AI	GATC	3 cut(s)	129, 170, 338
Sau96I	GGNCC	2 cut(s)	303, 360
SchI	GAGTC	2 cut(s)	79, 424
ScrFI	CCNGG	1 cut(s)	464
SduI	GDGCHC	2 cut(s)	111, 292
SfaNI	GCATC	3 cut(s)	466, 606, 752
SinI	GGWCC	2 cut(s)	303, 360
SmiMI	CAYNNNNRTG	1 cut(s)	614
SmlI	CTYRAG	2 cut(s)	100, 573
SmoI	CTYRAG	2 cut(s)	100, 573
SseBI	AGGCCT	1 cut(s)	98
SsiI	CCGC	6 cut(s)	256, 295, 306, 351, 378, 714
SspMI	CTAG	1 cut(s)	300
StuI	AGGCCT	1 cut(s)	98
StyD4I	CCNGG	1 cut(s)	462
StyI	CCWWGG	3 cut(s)	174, 299, 696
TaaI	ACNGT	3 cut(s)	185, 347, 763
TaiI	ACGT	3 cut(s)	21, 402, 711
TaqI	TCGA	2 cut(s)	114, 746
TauI	GCSGC	3 cut(s)	258, 297, 716
TscAI	CASTG	3 cut(s)	54, 410, 768
TseFI	GTSAC	3 cut(s)	38, 190, 366
TseI	GCWGC	1 cut(s)	503
Tsp45I	GTSAC	3 cut(s)	38, 190, 366
TspDTI	ATGAA	1 cut(s)	566
TspRI	CASTG	3 cut(s)	54, 410, 768
Van91I	CCANNNNNTGG	1 cut(s)	479
VpaK11BI	GGWCC	2 cut(s)	303, 360
XagI	CCTNNNNNAGG	1 cut(s)	333
XmaJI	CCTAGG	1 cut(s)	299
XspI	CTAG	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.