Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0006332

Physical Location & Seq

Genomic Coordinates Reverse (-)

19854788 .. 19856140

Gene Structure 1353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g17340.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGACAAGCAGCAACAACGTTACTCATGGGCAGTTTGGTGATACCACACTGACCAAAGTCTTCGTCGGAGGGCTGGCGTGGGAGACTCCCAAAGAGGCCTTGAGAGAGCACTTCGACAAGTACGGCGAGATCTTGGAGGCCGTCATCATCTCCGACAAACTCACCGGCCGATCCAAGGGTTACGGTTTCGTCACCTTCAAGGAGCCGGAGGAGGCTAAGAAGGCTTGTGAGGACGCCACGCCGGTCATCAACGGCCGCCGTGCCAACTGCAACCTCGCTTCCCTCGGGGCTCGCCGCCCTAGGTCCGCTTCAAACACCACCCCTCCTCCTCAACGAGGATCGAACGGTGGCGGAGCGAGGTCCATGTCACCTGCTCCCGCACCTGCACCTGCAAATCACGTGCAGTGCTACTCCCCCACATACATTGCCGCTGATATGAGTTACAATCATAAGGTGGGCTACACAGGTGGAGCTTACATGAACGGGCATTACTCTGCTCCTCAAGTTTACCCAGCACAGCCAGTGGTGGGACACAACACTTTGATGCCAATGTATCCTCTCTACTACCACCATCACCATCAATCACATACAATGGGCTTACCTGCTCACATCTACTCGCCGACCATGGCCGGACACGTGGCCACAGTCCCGACCATTATGTCCAAACCAGCATCGATTGCTCCTAACACAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010029 GO:0010033 GO:0010035 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0097159 GO:0097305 GO:1900140 GO:1901363 GO:1901700 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

232

Amino Acids

24.79

Weight (kDa)

9.07

Isoelectric Point (pI)

59.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54770 AT3G54770 AT3G54770
fragaria_vesca	FvH4_7g20260 FvH4_7g20260 FvH4_7g20260 FvH4_7g20260
malus_domestica	MD01G1112300.v1.1 MD07G1180100.v1.1
prunus_persica	Prupe.2G219600_v2.0.a1 Prupe.2G219600_v2.0.a1 Prupe.2G219600_v2.0.a1
pyrus_communis	pycom01g14080 pycom07g17340
rosa_chinensis	RchiOBHm_Chr1g0364201
rosa_laevigata	RLG00000027506
rosa_multiflora	Rmu_sc0000071.1_g000004
rosa_roxburghii	Rroxscaffold_4G00292570
rosa_rugosa	Rorug01G0314600.1 Rorug01G0314700 Rorug01G0314700 Rorug01G0314800
rosa_samantha	Rh1AG322100 Rh1BG284900 Rh1CG301400 Rh1DG316300
rosa_wichuraiana	Rw1G028530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	379, 391, 397
AasI	GACNNNNNNGTC	1 cut(s)	658
Acc36I	ACCTGC	4 cut(s)	379, 391, 397, 610
AciI	CCGC	6 cut(s)	256, 295, 306, 351, 378, 429
AclI	AACGTT	1 cut(s)	18
AclWI	GGATC	2 cut(s)	165, 346
AcoI	YGGCCR	4 cut(s)	166, 253, 627, 639
AcvI	CACGTG	2 cut(s)	400, 637
AcyI	GRCGYC	1 cut(s)	234
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	4 cut(s)	175, 335, 527, 689
AflIII	ACRYGT	1 cut(s)	634
AgsI	TTSAA	2 cut(s)	199, 312
AluBI	AGCT	1 cut(s)	473
AluI	AGCT	1 cut(s)	473
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	1 cut(s)	77
AlwI	GGATC	2 cut(s)	165, 346
Ama87I	CYCGRG	1 cut(s)	284
AoxI	GGCC	6 cut(s)	96, 138, 166, 253, 627, 639
ApeKI	GCWGC	1 cut(s)	9
ArsI	GACNNNNNNTTYG	2 cut(s)	48, 80
AspA2I	CCTAGG	1 cut(s)	299
AspS9I	GGNCC	2 cut(s)	303, 360
AsuHPI	GGTGA	5 cut(s)	50, 154, 184, 360, 566
AvaI	CYCGRG	1 cut(s)	284
AvaII	GGWCC	2 cut(s)	303, 360
AvrII	CCTAGG	1 cut(s)	299
BalI	TGGCCA	1 cut(s)	641
BanII	GRGCYC	1 cut(s)	292
BbrPI	CACGTG	2 cut(s)	400, 637
BbsI	GAAGAC	1 cut(s)	52
Bbv12I	GWGCWC	1 cut(s)	111
BbvI	GCAGC	1 cut(s)	21
BccI	CCATC	2 cut(s)	579, 585
BceAI	ACGGC	4 cut(s)	125, 139, 243, 268
BciVI	GTATCC	1 cut(s)	564
BcoDI	GTCTC	1 cut(s)	77
BfaI	CTAG	1 cut(s)	300
BfuAI	ACCTGC	4 cut(s)	379, 391, 397, 610
BfuI	GTATCC	1 cut(s)	564
BglII	AGATCT	1 cut(s)	129
BisI	GCNGC	4 cut(s)	10, 256, 295, 429
BlnI	CCTAGG	1 cut(s)	299
BlsI	GCNGC	4 cut(s)	11, 257, 296, 430
Bme18I	GGWCC	2 cut(s)	303, 360
BmeT110I	CYCGRG	1 cut(s)	284
BmgT120I	GGNCC	2 cut(s)	303, 360
BmiI	GGNNCC	1 cut(s)	204
BmsI	GCATC	2 cut(s)	534, 680
BoxI	GACNNNNGTC	1 cut(s)	56
BpiI	GAAGAC	1 cut(s)	52
BpuEI	CTTGAG	2 cut(s)	121, 486
Bsa29I	ATCGAT	1 cut(s)	674
BsaAI	YACGTR	2 cut(s)	400, 637
BsaHI	GRCGYC	1 cut(s)	234
BsaJI	CCNNGG	4 cut(s)	174, 283, 299, 624
BsaXI	ACNNNNNCTCC	4 cut(s)	307, 310, 337, 340
Bsc4I	CCNNNNNNNGG	4 cut(s)	175, 335, 527, 689
Bse118I	RCCGGY	2 cut(s)	164, 241
Bse1I	ACTGG	1 cut(s)	521
Bse3DI	GCAATG	1 cut(s)	423
BseCI	ATCGAT	1 cut(s)	674
BseDI	CCNNGG	4 cut(s)	174, 283, 299, 624
BseLI	CCNNNNNNNGG	4 cut(s)	175, 335, 527, 689
BseMI	GCAATG	1 cut(s)	423
BseNI	ACTGG	1 cut(s)	521
BseRI	GAGGAG	4 cut(s)	224, 315, 318, 489
BseX3I	CGGCCG	2 cut(s)	166, 253
BseXI	GCAGC	1 cut(s)	21
BseYI	CCCAGC	1 cut(s)	511
BsgI	GTGCAG	2 cut(s)	369, 422
Bsh1285I	CGRYCG	2 cut(s)	169, 256
BshFI	GGCC	6 cut(s)	98, 140, 168, 255, 629, 641
BshVI	ATCGAT	1 cut(s)	674
BsiEI	CGRYCG	2 cut(s)	169, 256
BsiHKAI	GWGCWC	1 cut(s)	111
BsiHKCI	CYCGRG	1 cut(s)	284
BsiSI	CCGG	4 cut(s)	165, 206, 242, 630
BslFI	GGGAC	2 cut(s)	543, 632
BslI	CCNNNNNNNGG	4 cut(s)	175, 335, 527, 689
BsmAI	GTCTC	1 cut(s)	77
BsmFI	GGGAC	2 cut(s)	543, 632
BsnI	GGCC	6 cut(s)	98, 140, 168, 255, 629, 641
BsoBI	CYCGRG	1 cut(s)	284
Bsp1286I	GDGCHC	2 cut(s)	111, 292
Bsp143I	GATC	3 cut(s)	129, 170, 338
Bsp19I	CCATGG	1 cut(s)	624
BspACI	CCGC	6 cut(s)	256, 295, 306, 351, 378, 429
BspANI	GGCC	6 cut(s)	98, 140, 168, 255, 629, 641
BspDI	ATCGAT	1 cut(s)	674
BspLI	GGNNCC	1 cut(s)	204
BspMI	ACCTGC	4 cut(s)	379, 391, 397, 610
BspPI	GGATC	2 cut(s)	165, 346
BsrDI	GCAATG	1 cut(s)	423
BsrFI	RCCGGY	2 cut(s)	164, 241
BsrI	ACTGG	1 cut(s)	521
BssAI	RCCGGY	2 cut(s)	164, 241
BssECI	CCNNGG	4 cut(s)	174, 283, 299, 624
BssMI	GATC	3 cut(s)	129, 170, 338
BssNI	GRCGYC	1 cut(s)	234
BssT1I	CCWWGG	3 cut(s)	174, 299, 624
Bst4CI	ACNGT	3 cut(s)	185, 347, 646
BstACI	GRCGYC	1 cut(s)	234
BstAPI	GCANNNNNTGC	1 cut(s)	677
BstBAI	YACGTR	2 cut(s)	400, 637
BstC8I	GCNNGC	2 cut(s)	75, 292
BstDEI	CTNAG	1 cut(s)	216
BstDSI	CCRYGG	1 cut(s)	624
BstENI	CCTNNNNNAGG	2 cut(s)	333, 687
BstKTI	GATC	3 cut(s)	132, 173, 341
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	3 cut(s)	129, 170, 338
BstMCI	CGRYCG	2 cut(s)	169, 256
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 677
BstPAI	GACNNNNGTC	1 cut(s)	56
BstV1I	GCAGC	1 cut(s)	21
BstV2I	GAAGAC	1 cut(s)	52
BstX2I	RGATCY	1 cut(s)	129
BstYI	RGATCY	1 cut(s)	129
BstZI	CGGCCG	2 cut(s)	166, 253
Bsu15I	ATCGAT	1 cut(s)	674
BsuI	GTATCC	1 cut(s)	564
BsuRI	GGCC	6 cut(s)	98, 140, 168, 255, 629, 641
BsuTUI	ATCGAT	1 cut(s)	674
BtgI	CCRYGG	1 cut(s)	624
BtsI	GCAGTG	1 cut(s)	410
BtsIMutI	CAGTG	3 cut(s)	47, 410, 528
BveI	ACCTGC	4 cut(s)	379, 391, 397, 610
Cac8I	GCNNGC	2 cut(s)	75, 292
Cfr10I	RCCGGY	2 cut(s)	164, 241
Cfr13I	GGNCC	2 cut(s)	303, 360
ClaI	ATCGAT	1 cut(s)	674
CseI	GACGC	1 cut(s)	242
Csp6I	GTAC	1 cut(s)	121
CspCI	CAANNNNNGTGG	2 cut(s)	406, 441
CviAII	CATG	4 cut(s)	26, 364, 478, 625
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	3 cut(s)	131, 172, 340
DpnII	GATC	3 cut(s)	129, 170, 338
DrdI	GACNNNNNNGTC	1 cut(s)	658
DseDI	GACNNNNNNGTC	1 cut(s)	658
EaeI	YGGCCR	4 cut(s)	166, 253, 627, 639
EagI	CGGCCG	2 cut(s)	166, 253
EciI	GGCGGA	1 cut(s)	366
EclXI	CGGCCG	2 cut(s)	166, 253
Eco130I	CCWWGG	3 cut(s)	174, 299, 624
Eco147I	AGGCCT	1 cut(s)	98
Eco24I	GRGCYC	1 cut(s)	292
Eco47I	GGWCC	2 cut(s)	303, 360
Eco52I	CGGCCG	2 cut(s)	166, 253
Eco72I	CACGTG	2 cut(s)	400, 637
Eco88I	CYCGRG	1 cut(s)	284
EcoNI	CCTNNNNNAGG	2 cut(s)	333, 687
EcoT14I	CCWWGG	3 cut(s)	174, 299, 624
EcoT38I	GRGCYC	1 cut(s)	292
ErhI	CCWWGG	3 cut(s)	174, 299, 624
FaeI	CATG	4 cut(s)	29, 367, 481, 628
FaiI	YATR	9 cut(s)	27, 365, 421, 437, 450, 479, 588, 626, 659
FaqI	GGGAC	2 cut(s)	543, 632
FatI	CATG	4 cut(s)	25, 363, 477, 624
FauI	CCCGC	1 cut(s)	385
Fnu4HI	GCNGC	4 cut(s)	10, 256, 295, 429
FriOI	GRGCYC	1 cut(s)	292
Fsp4HI	GCNGC	4 cut(s)	10, 256, 295, 429
FspBI	CTAG	1 cut(s)	300
GluI	GCNGC	4 cut(s)	10, 256, 295, 429
GsaI	CCCAGC	1 cut(s)	515
HaeIII	GGCC	6 cut(s)	98, 140, 168, 255, 629, 641
HapII	CCGG	4 cut(s)	165, 206, 242, 630
HgaI	GACGC	1 cut(s)	242
Hin1I	GRCGYC	1 cut(s)	234
Hin1II	CATG	4 cut(s)	29, 367, 481, 628
HinfI	GANTC	1 cut(s)	85
HpaII	CCGG	4 cut(s)	165, 206, 242, 630
HphI	GGTGA	5 cut(s)	50, 154, 184, 360, 566
Hpy166II	GTNNAC	1 cut(s)	508
Hpy188I	TCNGA	2 cut(s)	68, 154
Hpy188III	TCNNGA	1 cut(s)	649
Hpy8I	GTNNAC	1 cut(s)	508
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	2 cut(s)	205, 214
HpyCH4III	ACNGT	3 cut(s)	185, 347, 646
HpyCH4IV	ACGT	3 cut(s)	18, 399, 636
HpyCH4V	TGCA	4 cut(s)	270, 386, 392, 403
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 677
HpyF3I	CTNAG	1 cut(s)	216
HpySE526I	ACGT	3 cut(s)	18, 399, 636
Hsp92I	GRCGYC	1 cut(s)	234
Hsp92II	CATG	4 cut(s)	29, 367, 481, 628
Kzo9I	GATC	3 cut(s)	129, 170, 338
LmnI	GCTCC	6 cut(s)	202, 353, 379, 470, 502, 685
Lsp1109I	GCAGC	1 cut(s)	21
LweI	GCATC	2 cut(s)	534, 680
MaeI	CTAG	1 cut(s)	300
MaeII	ACGT	3 cut(s)	18, 399, 636
MaeIII	GTNAC	5 cut(s)	19, 179, 190, 366, 440
MalI	GATC	3 cut(s)	131, 172, 340
MboI	GATC	3 cut(s)	129, 170, 338
MboII	GAAGA	1 cut(s)	52
MflI	RGATCY	1 cut(s)	129
MhlI	GDGCHC	2 cut(s)	111, 292
MlsI	TGGCCA	1 cut(s)	641
MluNI	TGGCCA	1 cut(s)	641
MlyI	GAGTC	1 cut(s)	79
MmeI	TCCRAC	2 cut(s)	46, 177
Mox20I	TGGCCA	1 cut(s)	641
MscI	TGGCCA	1 cut(s)	641
MslI	CAYNNNNRTG	1 cut(s)	542
Msp20I	TGGCCA	1 cut(s)	641
MspA1I	CMGCKG	1 cut(s)	431
MspI	CCGG	4 cut(s)	165, 206, 242, 630
MwoI	GCNNNNNNNGC	2 cut(s)	221, 677
NcoI	CCATGG	1 cut(s)	624
NdeII	GATC	3 cut(s)	129, 170, 338
NlaIII	CATG	4 cut(s)	29, 367, 481, 628
NlaIV	GGNNCC	1 cut(s)	204
NmuCI	GTSAC	2 cut(s)	190, 366
PaqCI	CACCTGC	3 cut(s)	379, 391, 397
PceI	AGGCCT	1 cut(s)	98
PkrI	GCNGC	4 cut(s)	11, 257, 296, 430
PleI	GAGTC	1 cut(s)	79
PmaCI	CACGTG	2 cut(s)	400, 637
PmlI	CACGTG	2 cut(s)	400, 637
PpsI	GAGTC	1 cut(s)	79
Ppu21I	YACGTR	2 cut(s)	400, 637
PshAI	GACNNNNGTC	1 cut(s)	56
Psp1406I	AACGTT	1 cut(s)	18
PspCI	CACGTG	2 cut(s)	400, 637
PspFI	CCCAGC	1 cut(s)	511
PspN4I	GGNNCC	1 cut(s)	204
PspPI	GGNCC	2 cut(s)	303, 360
PsrI	GAACNNNNNNTAC	2 cut(s)	473, 505
PsuI	RGATCY	1 cut(s)	129
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
RseI	CAYNNNNRTG	1 cut(s)	542
SatI	GCNGC	4 cut(s)	10, 256, 295, 429
Sau3AI	GATC	3 cut(s)	129, 170, 338
Sau96I	GGNCC	2 cut(s)	303, 360
SchI	GAGTC	1 cut(s)	79
SduI	GDGCHC	2 cut(s)	111, 292
SfaNI	GCATC	2 cut(s)	534, 680
SinI	GGWCC	2 cut(s)	303, 360
SmiMI	CAYNNNNRTG	1 cut(s)	542
SmlI	CTYRAG	2 cut(s)	100, 501
SmoI	CTYRAG	2 cut(s)	100, 501
SseBI	AGGCCT	1 cut(s)	98
SsiI	CCGC	6 cut(s)	256, 295, 306, 351, 378, 429
SspMI	CTAG	1 cut(s)	300
StuI	AGGCCT	1 cut(s)	98
StyI	CCWWGG	3 cut(s)	174, 299, 624
TaaI	ACNGT	3 cut(s)	185, 347, 646
TaiI	ACGT	3 cut(s)	21, 402, 639
TaqI	TCGA	3 cut(s)	114, 341, 674
TauI	GCSGC	3 cut(s)	258, 297, 431
TscAI	CASTG	3 cut(s)	54, 410, 528
TseFI	GTSAC	2 cut(s)	190, 366
TseI	GCWGC	1 cut(s)	9
Tsp45I	GTSAC	2 cut(s)	190, 366
TspDTI	ATGAA	1 cut(s)	494
TspRI	CASTG	3 cut(s)	54, 410, 528
VpaK11BI	GGWCC	2 cut(s)	303, 360
XagI	CCTNNNNNAGG	2 cut(s)	333, 687
XmaJI	CCTAGG	1 cut(s)	299
XspI	CTAG	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.