Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0006332

Physical Location & Seq

Genomic Coordinates Forward (+)

24838899 .. 24841743

Gene Structure 2845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G219600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGACAATGAGCAACAACGTAATTAATGGGCAGTTTGGAGACACCACGCTGACCAAAGTGTTCGTTGGAGGGCTGGCTTGGGAGACTCCCAAGGAGGCCTTGAGAGAGCACTTCGACAAGTACGGTGAGATCTTGGAGGCCGTCATCATCTCTGATAAGCTCACCGGCAGATCCAAGGGCTACGGTTTCGTCACATTCAAGGAGGCTGAGGCTGCTAAGAAGGCTTGCGAGGACGCGACGCCCGTCATCAACGGCCGCCGCGCCAACTGCAATCTGGCTTCCCTCGGGGCTCGCCGCCCCAGGTCGGCTTCAACCACCACCCCTCCTCCTCCTCCTCCTCCTCAACGAGGATCGAACGGTGGCGGAGCAAGATCCATGTCACCTGCACCTGCAAATCACGTGCAGTGGTACTACCCAGCACCAGCAGGTACTCCAGCTACCCCATTCCATCACCAGCATCACCAGCCTGTTCCATTCTACGGGTACTCCCCAACCTACATTGCTGCTGATATCAGTTACAATCATAAGCTAGGCTACACAGGTGGGGCCTACATGAATGGGCATTACTCTCCTCAAGTGTACCCAGGCCAGCCTATGGTGGGGCCAAACACATTGATGCCAATGTACCCTCTTTACCACTACCACCATCAATCACATACAATGGGCTTACCTGCTCACATCTTTCCACCAACCACATCTGGACACGTGGCAGCAGTCCCAACCATCATGTCCAAACCAGCGTCAATTGCTCCCAACACAGGTAGACATATACGCGACACTAATTTTTTATGGTCTACTTGCTCACATGCTAACATATGCTCTACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010029 GO:0010033 GO:0010035 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0097159 GO:0097305 GO:1900140 GO:1901363 GO:1901700 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

276

Amino Acids

29.82

Weight (kDa)

9.21

Isoelectric Point (pI)

59.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54770 AT3G54770 AT3G54770
fragaria_vesca	FvH4_7g20260 FvH4_7g20260 FvH4_7g20260 FvH4_7g20260
malus_domestica	MD01G1112300.v1.1 MD07G1180100.v1.1
prunus_persica	Prupe.2G219600_v2.0.a1 Prupe.2G219600_v2.0.a1 Prupe.2G219600_v2.0.a1
pyrus_communis	pycom01g14080 pycom07g17340
rosa_chinensis	RchiOBHm_Chr1g0364201
rosa_laevigata	RLG00000027506
rosa_multiflora	Rmu_sc0000071.1_g000004
rosa_roxburghii	Rroxscaffold_4G00292570
rosa_rugosa	Rorug01G0314600.1 Rorug01G0314700 Rorug01G0314700 Rorug01G0314800
rosa_samantha	Rh1AG322100 Rh1BG284900 Rh1CG301400 Rh1DG316300
rosa_wichuraiana	Rw1G028530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	391, 397
Acc36I	ACCTGC	4 cut(s)	391, 397, 416, 679
AccB7I	CCANNNNNTGG	1 cut(s)	595
AccI	GTMKAC	2 cut(s)	763, 794
AccII	CGCG	3 cut(s)	236, 261, 774
AciI	CCGC	4 cut(s)	256, 259, 295, 363
AclWI	GGATC	3 cut(s)	165, 358, 366
AcoI	YGGCCR	1 cut(s)	253
AcvI	CACGTG	2 cut(s)	400, 706
AcyI	GRCGYC	1 cut(s)	239
AfaI	GTAC	6 cut(s)	122, 410, 430, 485, 581, 626
AfiI	CCNNNNNNNGG	6 cut(s)	304, 347, 479, 595, 599, 758
AflIII	ACRYGT	1 cut(s)	703
AgsI	TTSAA	2 cut(s)	199, 312
AjnI	CCWGG	2 cut(s)	299, 583
AluBI	AGCT	3 cut(s)	160, 437, 529
AluI	AGCT	3 cut(s)	160, 437, 529
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	2 cut(s)	33, 77
AlwI	GGATC	3 cut(s)	165, 358, 366
Ama87I	CYCGRG	1 cut(s)	284
AoxI	GGCC	6 cut(s)	96, 138, 253, 546, 586, 602
ApeKI	GCWGC	3 cut(s)	212, 503, 710
AseI	ATTAAT	1 cut(s)	24
AspLEI	GCGC	1 cut(s)	263
AspS9I	GGNCC	2 cut(s)	546, 602
AsuHPI	GGTGA	5 cut(s)	137, 154, 372, 443, 452
AvaI	CYCGRG	1 cut(s)	284
BanII	GRGCYC	1 cut(s)	292
BbrPI	CACGTG	2 cut(s)	400, 706
Bbv12I	GWGCWC	1 cut(s)	111
BbvCI	CCTCAGC	1 cut(s)	207
BbvI	GCAGC	3 cut(s)	199, 490, 722
BccI	CCATC	3 cut(s)	456, 654, 731
BceAI	ACGGC	2 cut(s)	125, 268
BciT130I	CCWGG	2 cut(s)	301, 585
BcoDI	GTCTC	2 cut(s)	33, 77
BfaI	CTAG	2 cut(s)	530, 826
BfuAI	ACCTGC	4 cut(s)	391, 397, 416, 679
BglII	AGATCT	1 cut(s)	129
BisI	GCNGC	6 cut(s)	213, 256, 259, 295, 504, 711
BlsI	GCNGC	6 cut(s)	214, 257, 260, 296, 505, 712
Bme1390I	CCNGG	2 cut(s)	301, 585
BmeT110I	CYCGRG	1 cut(s)	284
BmgT120I	GGNCC	2 cut(s)	546, 602
BmiI	GGNNCC	2 cut(s)	547, 603
BmrFI	CCNGG	2 cut(s)	301, 585
BmsI	GCATC	2 cut(s)	466, 606
BoxI	GACNNNNGTC	1 cut(s)	242
BpmI	CTGGAG	1 cut(s)	417
Bpu10I	CCTNAGC	1 cut(s)	207
BpuEI	CTTGAG	2 cut(s)	121, 558
BsaAI	YACGTR	2 cut(s)	400, 706
BsaHI	GRCGYC	1 cut(s)	239
BsaJI	CCNNGG	5 cut(s)	90, 174, 283, 299, 583
BsaXI	ACNNNNNCTCC	6 cut(s)	307, 310, 337, 340, 470, 500
Bsc4I	CCNNNNNNNGG	6 cut(s)	304, 347, 479, 595, 599, 758
Bse118I	RCCGGY	1 cut(s)	164
Bse3DI	GCAATG	1 cut(s)	498
BseBI	CCWGG	2 cut(s)	301, 585
BseDI	CCNNGG	5 cut(s)	90, 174, 283, 299, 583
BseLI	CCNNNNNNNGG	6 cut(s)	304, 347, 479, 595, 599, 758
BseMI	GCAATG	1 cut(s)	498
BseMII	CTCAG	1 cut(s)	198
BseRI	GAGGAG	7 cut(s)	315, 318, 321, 324, 327, 330, 561
BseX3I	CGGCCG	1 cut(s)	253
BseXI	GCAGC	3 cut(s)	199, 490, 722
BseYI	CCCAGC	1 cut(s)	415
BsgI	GTGCAG	2 cut(s)	369, 422
Bsh1236I	CGCG	3 cut(s)	236, 261, 774
Bsh1285I	CGRYCG	1 cut(s)	256
BshFI	GGCC	6 cut(s)	98, 140, 255, 548, 588, 604
BsiEI	CGRYCG	1 cut(s)	256
BsiHKAI	GWGCWC	1 cut(s)	111
BsiHKCI	CYCGRG	1 cut(s)	284
BsiSI	CCGG	1 cut(s)	165
BslFI	GGGAC	1 cut(s)	701
BslI	CCNNNNNNNGG	6 cut(s)	304, 347, 479, 595, 599, 758
BsmAI	GTCTC	2 cut(s)	33, 77
BsmFI	GGGAC	1 cut(s)	701
BsnI	GGCC	6 cut(s)	98, 140, 255, 548, 588, 604
BsoBI	CYCGRG	1 cut(s)	284
Bsp1286I	GDGCHC	2 cut(s)	111, 292
Bsp143I	GATC	4 cut(s)	129, 170, 350, 371
BspACI	CCGC	4 cut(s)	256, 259, 295, 363
BspANI	GGCC	6 cut(s)	98, 140, 255, 548, 588, 604
BspCNI	CTCAG	1 cut(s)	199
BspFNI	CGCG	3 cut(s)	236, 261, 774
BspLI	GGNNCC	2 cut(s)	547, 603
BspMI	ACCTGC	4 cut(s)	391, 397, 416, 679
BspPI	GGATC	3 cut(s)	165, 358, 366
BsrDI	GCAATG	1 cut(s)	498
BsrFI	RCCGGY	1 cut(s)	164
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	5 cut(s)	90, 174, 283, 299, 583
BssMI	GATC	4 cut(s)	129, 170, 350, 371
BssNI	GRCGYC	1 cut(s)	239
BssT1I	CCWWGG	2 cut(s)	90, 174
Bst2UI	CCWGG	2 cut(s)	301, 585
Bst4CI	ACNGT	3 cut(s)	125, 185, 359
BstACI	GRCGYC	1 cut(s)	239
BstBAI	YACGTR	2 cut(s)	400, 706
BstC8I	GCNNGC	4 cut(s)	75, 226, 292, 590
BstDEI	CTNAG	2 cut(s)	207, 216
BstENI	CCTNNNNNAGG	1 cut(s)	345
BstFNI	CGCG	3 cut(s)	236, 261, 774
BstHHI	GCGC	1 cut(s)	263
BstKTI	GATC	4 cut(s)	132, 173, 353, 374
BstMAI	GTCTC	2 cut(s)	33, 77
BstMBI	GATC	4 cut(s)	129, 170, 350, 371
BstMCI	CGRYCG	1 cut(s)	256
BstMWI	GCNNNNNNNGC	5 cut(s)	212, 221, 267, 463, 746
BstNI	CCWGG	2 cut(s)	301, 585
BstNSI	RCATGY	1 cut(s)	809
BstPAI	GACNNNNGTC	1 cut(s)	242
BstSCI	CCNGG	2 cut(s)	299, 583
BstUI	CGCG	3 cut(s)	236, 261, 774
BstV1I	GCAGC	3 cut(s)	199, 490, 722
BstX2I	RGATCY	3 cut(s)	129, 170, 371
BstYI	RGATCY	3 cut(s)	129, 170, 371
BstZI	CGGCCG	1 cut(s)	253
BsuRI	GGCC	6 cut(s)	98, 140, 255, 548, 588, 604
BtsI	GCAGTG	1 cut(s)	410
BtsIMutI	CAGTG	1 cut(s)	410
BveI	ACCTGC	4 cut(s)	391, 397, 416, 679
Cac8I	GCNNGC	4 cut(s)	75, 226, 292, 590
CfoI	GCGC	1 cut(s)	263
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	2 cut(s)	546, 602
CseI	GACGC	3 cut(s)	242, 247, 729
Csp6I	GTAC	6 cut(s)	121, 409, 429, 484, 580, 625
CviAII	CATG	4 cut(s)	376, 553, 727, 806
CviQI	GTAC	6 cut(s)	121, 409, 429, 484, 580, 625
DdeI	CTNAG	2 cut(s)	207, 216
DpnI	GATC	4 cut(s)	131, 172, 352, 373
DpnII	GATC	4 cut(s)	129, 170, 350, 371
EaeI	YGGCCR	1 cut(s)	253
EagI	CGGCCG	1 cut(s)	253
EciI	GGCGGA	1 cut(s)	378
EclXI	CGGCCG	1 cut(s)	253
Eco130I	CCWWGG	2 cut(s)	90, 174
Eco147I	AGGCCT	1 cut(s)	98
Eco24I	GRGCYC	1 cut(s)	292
Eco32I	GATATC	1 cut(s)	511
Eco52I	CGGCCG	1 cut(s)	253
Eco72I	CACGTG	2 cut(s)	400, 706
Eco88I	CYCGRG	1 cut(s)	284
EcoNI	CCTNNNNNAGG	1 cut(s)	345
EcoO109I	RGGNCCY	1 cut(s)	546
EcoRII	CCWGG	2 cut(s)	299, 583
EcoRV	GATATC	1 cut(s)	511
EcoT14I	CCWWGG	2 cut(s)	90, 174
EcoT38I	GRGCYC	1 cut(s)	292
ErhI	CCWWGG	2 cut(s)	90, 174
FaeI	CATG	4 cut(s)	379, 556, 730, 809
FalI	AAGNNNNNCTT	2 cut(s)	83, 115
FaqI	GGGAC	1 cut(s)	701
FatI	CATG	4 cut(s)	375, 552, 726, 805
FauNDI	CATATG	1 cut(s)	815
FblI	GTMKAC	2 cut(s)	763, 794
Fnu4HI	GCNGC	6 cut(s)	213, 256, 259, 295, 504, 711
FriOI	GRGCYC	1 cut(s)	292
Fsp4HI	GCNGC	6 cut(s)	213, 256, 259, 295, 504, 711
FspBI	CTAG	2 cut(s)	530, 826
GlaI	GCGC	1 cut(s)	262
GluI	GCNGC	6 cut(s)	213, 256, 259, 295, 504, 711
GsaI	CCCAGC	1 cut(s)	419
GsuI	CTGGAG	1 cut(s)	417
HaeIII	GGCC	6 cut(s)	98, 140, 255, 548, 588, 604
HapII	CCGG	1 cut(s)	165
HgaI	GACGC	3 cut(s)	242, 247, 729
HhaI	GCGC	1 cut(s)	263
Hin1I	GRCGYC	1 cut(s)	239
Hin1II	CATG	4 cut(s)	379, 556, 730, 809
Hin6I	GCGC	1 cut(s)	261
HinP1I	GCGC	1 cut(s)	261
HinfI	GANTC	1 cut(s)	85
HpaII	CCGG	1 cut(s)	165
HphI	GGTGA	5 cut(s)	137, 154, 372, 443, 452
Hpy166II	GTNNAC	3 cut(s)	580, 764, 795
Hpy188I	TCNGA	1 cut(s)	154
Hpy188III	TCNNGA	1 cut(s)	699
Hpy8I	GTNNAC	3 cut(s)	580, 764, 795
Hpy99I	CGWCG	1 cut(s)	241
HpyAV	CCTTC	1 cut(s)	214
HpyCH4III	ACNGT	3 cut(s)	125, 185, 359
HpyCH4IV	ACGT	3 cut(s)	18, 399, 705
HpyCH4V	TGCA	4 cut(s)	270, 386, 392, 403
HpyF10VI	GCNNNNNNNGC	5 cut(s)	212, 221, 267, 463, 746
HpyF3I	CTNAG	2 cut(s)	207, 216
HpySE526I	ACGT	3 cut(s)	18, 399, 705
Hsp92I	GRCGYC	1 cut(s)	239
Hsp92II	CATG	4 cut(s)	379, 556, 730, 809
HspAI	GCGC	1 cut(s)	261
Kzo9I	GATC	4 cut(s)	129, 170, 350, 371
LmnI	GCTCC	2 cut(s)	365, 754
Lsp1109I	GCAGC	3 cut(s)	199, 490, 722
LweI	GCATC	2 cut(s)	466, 606
MaeI	CTAG	2 cut(s)	530, 826
MaeII	ACGT	3 cut(s)	18, 399, 705
MaeIII	GTNAC	3 cut(s)	190, 378, 515
MalI	GATC	4 cut(s)	131, 172, 352, 373
MboI	GATC	4 cut(s)	129, 170, 350, 371
MfeI	CAATTG	1 cut(s)	744
MflI	RGATCY	3 cut(s)	129, 170, 371
MhlI	GDGCHC	2 cut(s)	111, 292
MluCI	AATT	3 cut(s)	21, 744, 781
MlyI	GAGTC	1 cut(s)	79
MmeI	TCCRAC	1 cut(s)	46
MseI	TTAA	1 cut(s)	24
MslI	CAYNNNNRTG	1 cut(s)	614
MspI	CCGG	1 cut(s)	165
MspR9I	CCNGG	2 cut(s)	301, 585
MunI	CAATTG	1 cut(s)	744
MvaI	CCWGG	2 cut(s)	301, 585
MvnI	CGCG	3 cut(s)	236, 261, 774
MwoI	GCNNNNNNNGC	5 cut(s)	212, 221, 267, 463, 746
NdeI	CATATG	1 cut(s)	815
NdeII	GATC	4 cut(s)	129, 170, 350, 371
NlaIII	CATG	4 cut(s)	379, 556, 730, 809
NlaIV	GGNNCC	2 cut(s)	547, 603
NmuCI	GTSAC	2 cut(s)	190, 378
NspI	RCATGY	1 cut(s)	809
PaqCI	CACCTGC	2 cut(s)	391, 397
PceI	AGGCCT	1 cut(s)	98
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PflMI	CCANNNNNTGG	1 cut(s)	595
PkrI	GCNGC	6 cut(s)	214, 257, 260, 296, 505, 712
PleI	GAGTC	1 cut(s)	79
PmaCI	CACGTG	2 cut(s)	400, 706
PmlI	CACGTG	2 cut(s)	400, 706
PpsI	GAGTC	1 cut(s)	79
Ppu21I	YACGTR	2 cut(s)	400, 706
PshAI	GACNNNNGTC	1 cut(s)	242
PshBI	ATTAAT	1 cut(s)	24
Psp6I	CCWGG	2 cut(s)	299, 583
PspCI	CACGTG	2 cut(s)	400, 706
PspFI	CCCAGC	1 cut(s)	415
PspGI	CCWGG	2 cut(s)	299, 583
PspN4I	GGNNCC	2 cut(s)	547, 603
PspPI	GGNCC	2 cut(s)	546, 602
PsuI	RGATCY	3 cut(s)	129, 170, 371
RsaI	GTAC	6 cut(s)	122, 410, 430, 485, 581, 626
RsaNI	GTAC	6 cut(s)	121, 409, 429, 484, 580, 625
RseI	CAYNNNNRTG	1 cut(s)	614
SaqAI	TTAA	1 cut(s)	24
SatI	GCNGC	6 cut(s)	213, 256, 259, 295, 504, 711
Sau3AI	GATC	4 cut(s)	129, 170, 350, 371
Sau96I	GGNCC	2 cut(s)	546, 602
SchI	GAGTC	1 cut(s)	79
ScrFI	CCNGG	2 cut(s)	301, 585
SduI	GDGCHC	2 cut(s)	111, 292
SfaNI	GCATC	2 cut(s)	466, 606
SmiMI	CAYNNNNRTG	1 cut(s)	614
SmlI	CTYRAG	2 cut(s)	100, 573
SmoI	CTYRAG	2 cut(s)	100, 573
Sse9I	AATT	3 cut(s)	21, 744, 781
SseBI	AGGCCT	1 cut(s)	98
SsiI	CCGC	4 cut(s)	256, 259, 295, 363
SspMI	CTAG	2 cut(s)	530, 826
StuI	AGGCCT	1 cut(s)	98
StyD4I	CCNGG	2 cut(s)	299, 583
StyI	CCWWGG	2 cut(s)	90, 174
TaaI	ACNGT	3 cut(s)	125, 185, 359
TaiI	ACGT	3 cut(s)	21, 402, 708
TaqI	TCGA	2 cut(s)	114, 353
TasI	AATT	3 cut(s)	21, 744, 781
TauI	GCSGC	3 cut(s)	258, 261, 297
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TscAI	CASTG	1 cut(s)	410
TseFI	GTSAC	2 cut(s)	190, 378
TseI	GCWGC	3 cut(s)	212, 503, 710
Tsp45I	GTSAC	2 cut(s)	190, 378
TspDTI	ATGAA	1 cut(s)	569
TspRI	CASTG	1 cut(s)	410
Van91I	CCANNNNNTGG	1 cut(s)	595
VspI	ATTAAT	1 cut(s)	24
XagI	CCTNNNNNAGG	1 cut(s)	345
XceI	RCATGY	1 cut(s)	809
XcmI	CCANNNNNNNNNTGG	1 cut(s)	271
XmiI	GTMKAC	2 cut(s)	763, 794
XspI	CTAG	2 cut(s)	530, 826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.