Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000071.1

Orthogroup ID

OG0006332

Physical Location & Seq

Genomic Coordinates Forward (+)

23111 .. 25226

Gene Structure 2116 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000071.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

atgagcaacaacgttaaccagttcggcgacacgacattgaccaaagtcttcgtcggagggctggcctgggagactcccaaggaggctctgagagagcacttcgacaagtacggtgagatcttggaggccgtcatcatctccgataagctcacaggccgatccaagggctacggcttcgtgacgttcaaggaggctgaagcggctaagaaggcttgcgaggacgccacaccggtcatcaacagccgccgtgccaactgcaacctggcctcgctcggggctcgccgccctaggtcggcttccaccaccactcctcctcctcaacgagtatcaaatggtggaggaccaaggtctatgtcgccggcgccggcgccggcacctgcaaatcacgtgcaatggtactacccggcagggactccagcagcagcttctgtaccattccatcaccagcatcatcaggctgttccattctatggatactccccaacctacattgcaactgatatgggctacaatcacaagctgggatacagtactggtgggagttacatgaatgggcattactctcctcaagtgtaccatagccaccagcctatggttggtccaaacacattgatgccaatgtaccctctttaccattatcaccatcaatcacatacaatggggttacctgcccaattcttccccccaaccaccgcaggtcacgtcgcaacggtcccggcaatcatgtcaaaaccggcctcaattgctcccaataacacagtgtgcttggctgtggaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010029 GO:0010033 GO:0010035 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0097159 GO:0097305 GO:1900140 GO:1901363 GO:1901700 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

259

Amino Acids

28.07

Weight (kDa)

9.04

Isoelectric Point (pI)

60.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54770 AT3G54770 AT3G54770
fragaria_vesca	FvH4_7g20260 FvH4_7g20260 FvH4_7g20260 FvH4_7g20260
malus_domestica	MD01G1112300.v1.1 MD07G1180100.v1.1
prunus_persica	Prupe.2G219600_v2.0.a1 Prupe.2G219600_v2.0.a1 Prupe.2G219600_v2.0.a1
pyrus_communis	pycom01g14080 pycom07g17340
rosa_chinensis	RchiOBHm_Chr1g0364201
rosa_laevigata	RLG00000027506
rosa_multiflora	Rmu_sc0000071.1_g000004
rosa_roxburghii	Rroxscaffold_4G00292570
rosa_rugosa	Rorug01G0314600.1 Rorug01G0314700 Rorug01G0314700 Rorug01G0314800
rosa_samantha	Rh1AG322100 Rh1BG284900 Rh1CG301400 Rh1DG316300
rosa_wichuraiana	Rw1G028530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	385
Acc36I	ACCTGC	3 cut(s)	385, 676, 686
AccB1I	GGYRCC	3 cut(s)	361, 367, 373
AccB7I	CCANNNNNTGG	2 cut(s)	470, 592
AciI	CCGC	4 cut(s)	200, 244, 283, 693
AclI	AACGTT	1 cut(s)	12
AclWI	GGATC	1 cut(s)	153
AcuI	CTGAAG	1 cut(s)	216
AcvI	CACGTG	1 cut(s)	388
AcyI	GRCGYC	3 cut(s)	222, 362, 368
AdeI	CACNNNGTG	1 cut(s)	762
AfaI	GTAC	6 cut(s)	110, 398, 432, 532, 575, 623
AfiI	CCNNNNNNNGG	6 cut(s)	163, 273, 292, 470, 592, 596
AgeI	ACCGGT	1 cut(s)	229
AgsI	TTSAA	1 cut(s)	187
AjiI	CACGTC	1 cut(s)	703
AjnI	CCWGG	2 cut(s)	65, 261
AluBI	AGCT	3 cut(s)	148, 425, 520
AluI	AGCT	3 cut(s)	148, 425, 520
Alw21I	GWGCWC	1 cut(s)	99
Alw26I	GTCTC	1 cut(s)	65
AlwI	GGATC	1 cut(s)	153
AlwNI	CAGNNNCTG	1 cut(s)	428
Ama87I	CYCGRG	1 cut(s)	272
AoxI	GGCC	5 cut(s)	63, 126, 154, 264, 735
ApeKI	GCWGC	2 cut(s)	419, 422
ArsI	GACNNNNNNTTYG	2 cut(s)	36, 68
AsiGI	ACCGGT	1 cut(s)	229
AspA2I	CCTAGG	1 cut(s)	287
AspLEI	GCGC	2 cut(s)	364, 370
AspS9I	GGNCC	3 cut(s)	341, 599, 712
AsuC2I	CCSGG	2 cut(s)	404, 716
AsuHPI	GGTGA	3 cut(s)	125, 434, 632
AvaI	CYCGRG	1 cut(s)	272
AvaII	GGWCC	3 cut(s)	341, 599, 712
AvrII	CCTAGG	1 cut(s)	287
BanI	GGYRCC	3 cut(s)	361, 367, 373
BanII	GRGCYC	1 cut(s)	280
BbrPI	CACGTG	1 cut(s)	388
BbsI	GAAGAC	1 cut(s)	40
Bbv12I	GWGCWC	1 cut(s)	99
BbvI	GCAGC	2 cut(s)	431, 434
BccI	CCATC	2 cut(s)	447, 651
BceAI	ACGGC	3 cut(s)	113, 187, 231
BciT130I	CCWGG	2 cut(s)	67, 263
BciVI	GTATCC	2 cut(s)	467, 518
BcnI	CCSGG	2 cut(s)	404, 716
BcoDI	GTCTC	1 cut(s)	65
BfaI	CTAG	1 cut(s)	288
BfoI	RGCGCY	2 cut(s)	365, 371
BfuAI	ACCTGC	3 cut(s)	385, 676, 686
BfuI	GTATCC	2 cut(s)	467, 518
BglII	AGATCT	1 cut(s)	117
BisI	GCNGC	5 cut(s)	201, 244, 283, 420, 423
BlnI	CCTAGG	1 cut(s)	287
BlsI	GCNGC	5 cut(s)	202, 245, 284, 421, 424
BmcAI	AGTACT	1 cut(s)	532
Bme1390I	CCNGG	4 cut(s)	67, 263, 404, 716
Bme18I	GGWCC	3 cut(s)	341, 599, 712
BmeT110I	CYCGRG	1 cut(s)	272
BmgBI	CACGTC	1 cut(s)	703
BmgT120I	GGNCC	3 cut(s)	341, 599, 712
BmiI	GGNNCC	4 cut(s)	363, 369, 375, 714
BmrFI	CCNGG	4 cut(s)	67, 263, 404, 716
BmsI	GCATC	2 cut(s)	457, 603
BoxI	GACNNNNGTC	2 cut(s)	44, 346
BpiI	GAAGAC	1 cut(s)	40
BpmI	CTGGAG	1 cut(s)	399
BpuEI	CTTGAG	1 cut(s)	552
BpuMI	CCSGG	2 cut(s)	404, 716
BsaAI	YACGTR	1 cut(s)	388
BsaHI	GRCGYC	3 cut(s)	222, 362, 368
BsaJI	CCNNGG	5 cut(s)	66, 78, 162, 287, 344
BsaWI	WCCGGW	1 cut(s)	229
BsaXI	ACNNNNNCTCC	6 cut(s)	292, 295, 298, 322, 325, 328
Bsc4I	CCNNNNNNNGG	6 cut(s)	163, 273, 292, 470, 592, 596
Bse118I	RCCGGY	5 cut(s)	229, 358, 364, 370, 733
Bse1I	ACTGG	2 cut(s)	19, 538
Bse3DI	GCAATG	2 cut(s)	398, 489
BseBI	CCWGG	2 cut(s)	67, 263
BseDI	CCNNGG	5 cut(s)	66, 78, 162, 287, 344
BseLI	CCNNNNNNNGG	6 cut(s)	163, 273, 292, 470, 592, 596
BseMI	GCAATG	2 cut(s)	398, 489
BseMII	CTCAG	1 cut(s)	80
BseNI	ACTGG	2 cut(s)	19, 538
BseRI	GAGGAG	4 cut(s)	300, 303, 306, 555
BseXI	GCAGC	2 cut(s)	431, 434
BseYI	CCCAGC	1 cut(s)	520
BshFI	GGCC	5 cut(s)	65, 128, 156, 266, 737
BshNI	GGYRCC	3 cut(s)	361, 367, 373
BshTI	ACCGGT	1 cut(s)	229
BsiHKAI	GWGCWC	1 cut(s)	99
BsiHKCI	CYCGRG	1 cut(s)	272
BsiSI	CCGG	7 cut(s)	230, 359, 365, 371, 404, 716, 734
BslFI	GGGAC	2 cut(s)	424, 698
BslI	CCNNNNNNNGG	6 cut(s)	163, 273, 292, 470, 592, 596
BsmAI	GTCTC	1 cut(s)	65
BsmFI	GGGAC	2 cut(s)	424, 698
BsnI	GGCC	5 cut(s)	65, 128, 156, 266, 737
BsoBI	CYCGRG	1 cut(s)	272
Bsp1286I	GDGCHC	2 cut(s)	99, 280
Bsp143I	GATC	2 cut(s)	117, 158
BspACI	CCGC	4 cut(s)	200, 244, 283, 693
BspANI	GGCC	5 cut(s)	65, 128, 156, 266, 737
BspCNI	CTCAG	1 cut(s)	81
BspLI	GGNNCC	4 cut(s)	363, 369, 375, 714
BspMI	ACCTGC	3 cut(s)	385, 676, 686
BspPI	GGATC	1 cut(s)	153
BspT107I	GGYRCC	3 cut(s)	361, 367, 373
BsrDI	GCAATG	2 cut(s)	398, 489
BsrFI	RCCGGY	5 cut(s)	229, 358, 364, 370, 733
BsrI	ACTGG	2 cut(s)	19, 538
BssAI	RCCGGY	5 cut(s)	229, 358, 364, 370, 733
BssECI	CCNNGG	5 cut(s)	66, 78, 162, 287, 344
BssMI	GATC	2 cut(s)	117, 158
BssNI	GRCGYC	3 cut(s)	222, 362, 368
BssT1I	CCWWGG	4 cut(s)	78, 162, 287, 344
Bst2UI	CCWGG	2 cut(s)	67, 263
Bst4CI	ACNGT	4 cut(s)	113, 530, 712, 760
BstACI	GRCGYC	3 cut(s)	222, 362, 368
BstBAI	YACGTR	1 cut(s)	388
BstC8I	GCNNGC	6 cut(s)	63, 214, 280, 360, 366, 372
BstDEI	CTNAG	2 cut(s)	89, 204
BstEII	GGTNACC	1 cut(s)	663
BstH2I	RGCGCY	2 cut(s)	365, 371
BstHHI	GCGC	2 cut(s)	364, 370
BstKTI	GATC	2 cut(s)	120, 161
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	2 cut(s)	117, 158
BstMWI	GCNNNNNNNGC	3 cut(s)	200, 209, 743
BstNI	CCWGG	2 cut(s)	67, 263
BstPAI	GACNNNNGTC	2 cut(s)	44, 346
BstPI	GGTNACC	1 cut(s)	663
BstSCI	CCNGG	4 cut(s)	65, 261, 402, 714
BstV1I	GCAGC	2 cut(s)	431, 434
BstV2I	GAAGAC	1 cut(s)	40
BstX2I	RGATCY	1 cut(s)	117
BstYI	RGATCY	1 cut(s)	117
BsuI	GTATCC	2 cut(s)	467, 518
BsuRI	GGCC	5 cut(s)	65, 128, 156, 266, 737
BtrI	CACGTC	1 cut(s)	703
BtsIMutI	CAGTG	1 cut(s)	765
BveI	ACCTGC	3 cut(s)	385, 676, 686
Cac8I	GCNNGC	6 cut(s)	63, 214, 280, 360, 366, 372
CaiI	CAGNNNCTG	1 cut(s)	428
CfoI	GCGC	2 cut(s)	364, 370
Cfr10I	RCCGGY	5 cut(s)	229, 358, 364, 370, 733
Cfr13I	GGNCC	3 cut(s)	341, 599, 712
CseI	GACGC	1 cut(s)	230
Csp6I	GTAC	6 cut(s)	109, 397, 431, 531, 574, 622
CspAI	ACCGGT	1 cut(s)	229
CviAII	CATG	2 cut(s)	547, 724
CviQI	GTAC	6 cut(s)	109, 397, 431, 531, 574, 622
DdeI	CTNAG	2 cut(s)	89, 204
DinI	GGCGCC	2 cut(s)	363, 369
DpnI	GATC	2 cut(s)	119, 160
DpnII	GATC	2 cut(s)	117, 158
DraIII	CACNNNGTG	1 cut(s)	762
Eco130I	CCWWGG	4 cut(s)	78, 162, 287, 344
Eco24I	GRGCYC	1 cut(s)	280
Eco47I	GGWCC	3 cut(s)	341, 599, 712
Eco57I	CTGAAG	1 cut(s)	216
Eco72I	CACGTG	1 cut(s)	388
Eco88I	CYCGRG	1 cut(s)	272
Eco91I	GGTNACC	1 cut(s)	663
EcoO65I	GGTNACC	1 cut(s)	663
EcoRII	CCWGG	2 cut(s)	65, 261
EcoT14I	CCWWGG	4 cut(s)	78, 162, 287, 344
EcoT38I	GRGCYC	1 cut(s)	280
EgeI	GGCGCC	2 cut(s)	363, 369
EheI	GGCGCC	2 cut(s)	363, 369
ErhI	CCWWGG	4 cut(s)	78, 162, 287, 344
FaeI	CATG	2 cut(s)	550, 727
FaiI	YATR	8 cut(s)	353, 471, 503, 548, 579, 593, 654, 725
FaqI	GGGAC	2 cut(s)	424, 698
FatI	CATG	2 cut(s)	546, 723
Fnu4HI	GCNGC	5 cut(s)	201, 244, 283, 420, 423
FriOI	GRGCYC	1 cut(s)	280
Fsp4HI	GCNGC	5 cut(s)	201, 244, 283, 420, 423
FspBI	CTAG	1 cut(s)	288
GlaI	GCGC	2 cut(s)	363, 369
GluI	GCNGC	5 cut(s)	201, 244, 283, 420, 423
GsaI	CCCAGC	1 cut(s)	524
GsuI	CTGGAG	1 cut(s)	399
HaeII	RGCGCY	2 cut(s)	365, 371
HaeIII	GGCC	5 cut(s)	65, 128, 156, 266, 737
HapII	CCGG	7 cut(s)	230, 359, 365, 371, 404, 716, 734
HgaI	GACGC	1 cut(s)	230
HhaI	GCGC	2 cut(s)	364, 370
Hin1I	GRCGYC	3 cut(s)	222, 362, 368
Hin1II	CATG	2 cut(s)	550, 727
Hin6I	GCGC	2 cut(s)	362, 368
HinP1I	GCGC	2 cut(s)	362, 368
HincII	GTYRAC	1 cut(s)	16
HindII	GTYRAC	1 cut(s)	16
HinfI	GANTC	2 cut(s)	73, 412
HpaI	GTTAAC	1 cut(s)	16
HpaII	CCGG	7 cut(s)	230, 359, 365, 371, 404, 716, 734
HphI	GGTGA	3 cut(s)	125, 434, 632
Hpy166II	GTNNAC	2 cut(s)	16, 574
Hpy188I	TCNGA	3 cut(s)	56, 90, 142
Hpy188III	TCNNGA	1 cut(s)	178
Hpy8I	GTNNAC	2 cut(s)	16, 574
Hpy99I	CGWCG	2 cut(s)	56, 707
HpyAV	CCTTC	1 cut(s)	202
HpyCH4III	ACNGT	4 cut(s)	113, 530, 712, 760
HpyCH4IV	ACGT	4 cut(s)	12, 182, 387, 702
HpyCH4V	TGCA	4 cut(s)	258, 380, 391, 494
HpyF10VI	GCNNNNNNNGC	3 cut(s)	200, 209, 743
HpyF3I	CTNAG	2 cut(s)	89, 204
HpySE526I	ACGT	4 cut(s)	12, 182, 387, 702
Hsp92I	GRCGYC	3 cut(s)	222, 362, 368
Hsp92II	CATG	2 cut(s)	550, 727
HspAI	GCGC	2 cut(s)	362, 368
KasI	GGCGCC	2 cut(s)	361, 367
KroI	GCCGGC	3 cut(s)	358, 364, 370
KroNI	GCCGGC	3 cut(s)	360, 366, 372
KspAI	GTTAAC	1 cut(s)	16
Kzo9I	GATC	2 cut(s)	117, 158
LmnI	GCTCC	1 cut(s)	751
Lsp1109I	GCAGC	2 cut(s)	431, 434
LweI	GCATC	2 cut(s)	457, 603
MaeI	CTAG	1 cut(s)	288
MaeII	ACGT	4 cut(s)	12, 182, 387, 702
MaeIII	GTNAC	4 cut(s)	178, 542, 663, 698
MalI	GATC	2 cut(s)	119, 160
MboI	GATC	2 cut(s)	117, 158
MboII	GAAGA	2 cut(s)	40, 670
MfeI	CAATTG	1 cut(s)	741
MflI	RGATCY	1 cut(s)	117
MhlI	GDGCHC	2 cut(s)	99, 280
MluCI	AATT	2 cut(s)	674, 741
Mly113I	GGCGCC	2 cut(s)	362, 368
MlyI	GAGTC	2 cut(s)	67, 406
MmeI	TCCRAC	1 cut(s)	34
MreI	CGCCGGCG	2 cut(s)	358, 364
MroNI	GCCGGC	3 cut(s)	358, 364, 370
MseI	TTAA	1 cut(s)	15
MslI	CAYNNNNRTG	1 cut(s)	611
MspI	CCGG	7 cut(s)	230, 359, 365, 371, 404, 716, 734
MspR9I	CCNGG	4 cut(s)	67, 263, 404, 716
MunI	CAATTG	1 cut(s)	741
MvaI	CCWGG	2 cut(s)	67, 263
MwoI	GCNNNNNNNGC	3 cut(s)	200, 209, 743
NaeI	GCCGGC	3 cut(s)	360, 366, 372
NarI	GGCGCC	2 cut(s)	362, 368
NciI	CCSGG	2 cut(s)	404, 716
NdeII	GATC	2 cut(s)	117, 158
NgoMIV	GCCGGC	3 cut(s)	358, 364, 370
NlaIII	CATG	2 cut(s)	550, 727
NlaIV	GGNNCC	4 cut(s)	363, 369, 375, 714
NmuCI	GTSAC	2 cut(s)	178, 698
PaqCI	CACCTGC	1 cut(s)	385
PdiI	GCCGGC	3 cut(s)	360, 366, 372
PflMI	CCANNNNNTGG	2 cut(s)	470, 592
PinAI	ACCGGT	1 cut(s)	229
PkrI	GCNGC	5 cut(s)	202, 245, 284, 421, 424
PleI	GAGTC	2 cut(s)	67, 406
PluTI	GGCGCC	2 cut(s)	365, 371
PmaCI	CACGTG	1 cut(s)	388
PmlI	CACGTG	1 cut(s)	388
PpsI	GAGTC	2 cut(s)	67, 406
Ppu21I	YACGTR	1 cut(s)	388
PshAI	GACNNNNGTC	2 cut(s)	44, 346
Psp1406I	AACGTT	1 cut(s)	12
Psp6I	CCWGG	2 cut(s)	65, 261
PspCI	CACGTG	1 cut(s)	388
PspEI	GGTNACC	1 cut(s)	663
PspFI	CCCAGC	1 cut(s)	520
PspGI	CCWGG	2 cut(s)	65, 261
PspN4I	GGNNCC	4 cut(s)	363, 369, 375, 714
PspPI	GGNCC	3 cut(s)	341, 599, 712
PstNI	CAGNNNCTG	1 cut(s)	428
PsuI	RGATCY	1 cut(s)	117
RsaI	GTAC	6 cut(s)	110, 398, 432, 532, 575, 623
RsaNI	GTAC	6 cut(s)	109, 397, 431, 531, 574, 622
RseI	CAYNNNNRTG	1 cut(s)	611
SaqAI	TTAA	1 cut(s)	15
SatI	GCNGC	5 cut(s)	201, 244, 283, 420, 423
Sau3AI	GATC	2 cut(s)	117, 158
Sau96I	GGNCC	3 cut(s)	341, 599, 712
ScaI	AGTACT	1 cut(s)	532
SchI	GAGTC	2 cut(s)	67, 406
ScrFI	CCNGG	4 cut(s)	67, 263, 404, 716
SduI	GDGCHC	2 cut(s)	99, 280
SfaNI	GCATC	2 cut(s)	457, 603
SfoI	GGCGCC	2 cut(s)	363, 369
SgrAI	CRCCGGYG	2 cut(s)	358, 364
SinI	GGWCC	3 cut(s)	341, 599, 712
SmiMI	CAYNNNNRTG	1 cut(s)	611
SmlI	CTYRAG	1 cut(s)	567
SmoI	CTYRAG	1 cut(s)	567
Sse9I	AATT	2 cut(s)	674, 741
SsiI	CCGC	4 cut(s)	200, 244, 283, 693
SspDI	GGCGCC	2 cut(s)	361, 367
SspMI	CTAG	1 cut(s)	288
StyD4I	CCNGG	4 cut(s)	65, 261, 402, 714
StyI	CCWWGG	4 cut(s)	78, 162, 287, 344
TaaI	ACNGT	4 cut(s)	113, 530, 712, 760
TaiI	ACGT	4 cut(s)	15, 185, 390, 705
TaqI	TCGA	1 cut(s)	102
TasI	AATT	2 cut(s)	674, 741
TatI	WGTACW	1 cut(s)	530
TauI	GCSGC	3 cut(s)	203, 246, 285
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TscAI	CASTG	1 cut(s)	765
TseFI	GTSAC	2 cut(s)	178, 698
TseI	GCWGC	2 cut(s)	419, 422
Tsp45I	GTSAC	2 cut(s)	178, 698
TspDTI	ATGAA	1 cut(s)	563
TspRI	CASTG	1 cut(s)	765
Van91I	CCANNNNNTGG	2 cut(s)	470, 592
VpaK11BI	GGWCC	3 cut(s)	341, 599, 712
XcmI	CCANNNNNNNNNTGG	2 cut(s)	259, 593
XmaJI	CCTAGG	1 cut(s)	287
XspI	CTAG	1 cut(s)	288
ZrmI	AGTACT	1 cut(s)	532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.