Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012520

Physical Location & Seq

Genomic Coordinates Forward (+)

20296130 .. 20298827

Gene Structure 2698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G54810.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGATTGGAACAAGCTTCCCCGAGGATCTTGATTGTGGCAACTTCTTTGACAACATGGATGATCTCATGGACTTTCCCGGTGGAGATATCGATGTCGGTTTCGGCATAGGTGACTCCGACTCTTTCCCTACCATCTGGACCACTCATCACGACACGTGGCCTGCCGCTTCTGATCCTCTCTTCTCTTCCAACACCAACTCTGATTCATCACCTGAGCTCTATGTTCCGTTTGAGGACATTGTTAAGGTGGAAAGACCTCCAAGCTTTGTAGAGGAAACATTGGTTGAGAAGAAGGAAGATTCGTTTTCGACAAACACTGATTCATCATCTTCTCATAGCCAATTCAGGAGCTCAAGTCCAGTGTCGGTTCTCGAGAGCAGCTCCTCCTCGTCTCAAACCACCAACACAACCTCCCTTGTTCTCCCTGGAAAGCACGGTCGTCCACGCACAAAACGCCCTCGTCCACCTGTCCAGGATAAAGATAGAGTCAAAGACAATGTGTGCGGTGGTGACTCGCGCCTCATCATTAGAATACCGAAACAGTTTCTCTCTGATCACAACAAGATGATCAACAAGAAGAAGAAGAAGAAGGCCAAGATTACTTCTTCCTCTTCTTCGTCCGGGATTGATCTTGAAGTCAATGGAAACAACGTCGATTCGTATTCTTCAGAGCAATATCCGCTTAGGAAATGTATGCACTGTGAGGTCACCAAGACTCCACAGTGGAGGCTTGGTCCAATGGGTCCAAAGACACTTTGCAATGCGTGCGGTGTACGTTACAAATCAGGGAGGCTTTTCCCGGAGTACCGTCCAGCTGCTAGTCCAACATTTACTCCAGCTCTTCACTCAAACTCACACAAGAAAGTGGCTGAAATGAGAAACAAGAGATGCAGTGATGGTAGCTACATAACCGAAGAGAATGATCTGCAAGGGCTGATTCCGAACAATGCCTACATTGGCGTAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090351 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

322

Amino Acids

35.63

Weight (kDa)

6.26

Isoelectric Point (pI)

56.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	231 - 264	2.2e-15	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54810 AT3G54810
fragaria_vesca	FvH4_7g19340 FvH4_7g19340 FvH4_7g19340
malus_domestica	MD01G1108000.v1.1 MD07G1173900.v1.1
prunus_persica	Prupe.2G212900_v2.0.a1 Prupe.2G212900_v2.0.a1
pyrus_communis	pycom01g13490 pycom07g16830
rosa_chinensis	RchiOBHm_Chr1g0363221
rosa_laevigata	RLG00000027582
rosa_multiflora	Rmu_sc0001770.1_g000004
rosa_roxburghii	Rroxscaffold_4G00293350
rosa_samantha	Rh1AG314400 Rh1CG294300 Rh1DG308700
rosa_wichuraiana	Rw1G027860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	963
AccII	CGCG	1 cut(s)	517
AciI	CCGC	4 cut(s)	165, 504, 680, 768
AclWI	GGATC	2 cut(s)	33, 167
AcuI	CTGAAG	1 cut(s)	651
AcvI	CACGTG	1 cut(s)	156
AfaI	GTAC	2 cut(s)	774, 806
AflIII	ACRYGT	1 cut(s)	153
AgsI	TTSAA	1 cut(s)	635
AjnI	CCWGG	2 cut(s)	424, 471
AluBI	AGCT	8 cut(s)	15, 217, 264, 351, 381, 815, 839, 903
AluI	AGCT	8 cut(s)	15, 217, 264, 351, 381, 815, 839, 903
Alw21I	GWGCWC	2 cut(s)	219, 353
Alw26I	GTCTC	1 cut(s)	396
AlwI	GGATC	2 cut(s)	33, 167
Ama87I	CYCGRG	2 cut(s)	20, 371
AoxI	GGCC	2 cut(s)	158, 591
ApeKI	GCWGC	2 cut(s)	378, 815
AspLEI	GCGC	1 cut(s)	519
AspS9I	GGNCC	3 cut(s)	138, 734, 743
AsuC2I	CCSGG	3 cut(s)	78, 622, 800
AsuHPI	GGTGA	4 cut(s)	122, 201, 521, 700
AvaI	CYCGRG	2 cut(s)	20, 371
AvaII	GGWCC	3 cut(s)	138, 734, 743
BanII	GRGCYC	2 cut(s)	219, 353
BbrPI	CACGTG	1 cut(s)	156
Bbv12I	GWGCWC	2 cut(s)	219, 353
BbvI	GCAGC	2 cut(s)	390, 802
BccI	CCATC	2 cut(s)	140, 890
BciT130I	CCWGG	2 cut(s)	426, 473
BclI	TGATCA	2 cut(s)	553, 567
BcnI	CCSGG	3 cut(s)	78, 622, 800
BcoDI	GTCTC	1 cut(s)	396
BfaI	CTAG	1 cut(s)	819
BisI	GCNGC	3 cut(s)	165, 379, 816
BlsI	GCNGC	3 cut(s)	166, 380, 817
Bme1390I	CCNGG	5 cut(s)	78, 426, 473, 622, 800
Bme18I	GGWCC	3 cut(s)	138, 734, 743
BmeT110I	CYCGRG	2 cut(s)	20, 371
BmgT120I	GGNCC	3 cut(s)	138, 734, 743
BmiI	GGNNCC	1 cut(s)	744
BmrFI	CCNGG	5 cut(s)	78, 426, 473, 622, 800
BmsI	GCATC	1 cut(s)	878
BplI	GAGNNNNNCTC	2 cut(s)	365, 397
BpmI	CTGGAG	1 cut(s)	819
Bpu10I	CCTNAGC	2 cut(s)	213, 683
BpuEI	CTTGAG	1 cut(s)	337
BpuMI	CCSGG	3 cut(s)	78, 622, 800
Bsa29I	ATCGAT	1 cut(s)	90
BsaAI	YACGTR	1 cut(s)	156
BsaJI	CCNNGG	2 cut(s)	21, 424
Bse1I	ACTGG	1 cut(s)	359
Bse3DI	GCAATG	1 cut(s)	766
BseBI	CCWGG	2 cut(s)	426, 473
BseCI	ATCGAT	1 cut(s)	90
BseDI	CCNNGG	2 cut(s)	21, 424
BseGI	GGATG	1 cut(s)	64
BseMI	GCAATG	1 cut(s)	766
BseMII	CTCAG	1 cut(s)	204
BseNI	ACTGG	1 cut(s)	359
BseRI	GAGGAG	2 cut(s)	373, 376
BseXI	GCAGC	2 cut(s)	390, 802
Bsh1236I	CGCG	1 cut(s)	517
Bsh1285I	CGRYCG	1 cut(s)	439
BshFI	GGCC	2 cut(s)	160, 593
BshVI	ATCGAT	1 cut(s)	90
BsiEI	CGRYCG	1 cut(s)	439
BsiHKAI	GWGCWC	2 cut(s)	219, 353
BsiHKCI	CYCGRG	2 cut(s)	20, 371
BsiSI	CCGG	3 cut(s)	78, 621, 800
BsmAI	GTCTC	1 cut(s)	396
BsmBI	CGTCTC	1 cut(s)	396
BsnI	GGCC	2 cut(s)	160, 593
BsoBI	CYCGRG	2 cut(s)	20, 371
Bsp1286I	GDGCHC	2 cut(s)	219, 353
Bsp143I	GATC	7 cut(s)	25, 61, 172, 553, 567, 628, 922
BspACI	CCGC	4 cut(s)	165, 504, 680, 768
BspANI	GGCC	2 cut(s)	160, 593
BspCNI	CTCAG	1 cut(s)	205
BspDI	ATCGAT	1 cut(s)	90
BspFNI	CGCG	1 cut(s)	517
BspLI	GGNNCC	1 cut(s)	744
BspPI	GGATC	2 cut(s)	33, 167
BspQI	GCTCTTC	1 cut(s)	846
BsrDI	GCAATG	1 cut(s)	766
BsrI	ACTGG	1 cut(s)	359
BssECI	CCNNGG	2 cut(s)	21, 424
BssMI	GATC	7 cut(s)	25, 61, 172, 553, 567, 628, 922
Bst2UI	CCWGG	2 cut(s)	426, 473
Bst4CI	ACNGT	5 cut(s)	437, 543, 701, 723, 809
Bst6I	CTCTTC	5 cut(s)	185, 190, 616, 846, 909
BstAPI	GCANNNNNTGC	1 cut(s)	765
BstBAI	YACGTR	1 cut(s)	156
BstC8I	GCNNGC	2 cut(s)	162, 766
BstDEI	CTNAG	2 cut(s)	213, 683
BstEII	GGTNACC	1 cut(s)	706
BstF5I	GGATG	1 cut(s)	64
BstFNI	CGCG	1 cut(s)	517
BstHHI	GCGC	1 cut(s)	519
BstKTI	GATC	7 cut(s)	28, 64, 175, 556, 570, 631, 925
BstMAI	GTCTC	1 cut(s)	396
BstMBI	GATC	7 cut(s)	25, 61, 172, 553, 567, 628, 922
BstMCI	CGRYCG	1 cut(s)	439
BstMWI	GCNNNNNNNGC	3 cut(s)	453, 679, 765
BstNI	CCWGG	2 cut(s)	426, 473
BstPI	GGTNACC	1 cut(s)	706
BstSCI	CCNGG	5 cut(s)	76, 424, 471, 620, 798
BstUI	CGCG	1 cut(s)	517
BstV1I	GCAGC	2 cut(s)	390, 802
BstX2I	RGATCY	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	25
Bsu15I	ATCGAT	1 cut(s)	90
BsuRI	GGCC	2 cut(s)	160, 593
BsuTUI	ATCGAT	1 cut(s)	90
BtsCI	GGATG	1 cut(s)	64
BtsI	GCAGTG	1 cut(s)	898
BtsIMutI	CAGTG	5 cut(s)	315, 366, 697, 728, 898
Cac8I	GCNNGC	2 cut(s)	162, 766
CfoI	GCGC	1 cut(s)	519
Cfr13I	GGNCC	3 cut(s)	138, 734, 743
ClaI	ATCGAT	1 cut(s)	90
Csp6I	GTAC	2 cut(s)	773, 805
CviAII	CATG	2 cut(s)	55, 67
CviQI	GTAC	2 cut(s)	773, 805
DdeI	CTNAG	2 cut(s)	213, 683
DpnI	GATC	7 cut(s)	27, 63, 174, 555, 569, 630, 924
DpnII	GATC	7 cut(s)	25, 61, 172, 553, 567, 628, 922
Eam1104I	CTCTTC	5 cut(s)	185, 190, 616, 846, 909
EarI	CTCTTC	5 cut(s)	185, 190, 616, 846, 909
Ecl136II	GAGCTC	2 cut(s)	217, 351
Eco24I	GRGCYC	2 cut(s)	219, 353
Eco32I	GATATC	1 cut(s)	88
Eco47I	GGWCC	3 cut(s)	138, 734, 743
Eco53kI	GAGCTC	2 cut(s)	217, 351
Eco57I	CTGAAG	1 cut(s)	651
Eco72I	CACGTG	1 cut(s)	156
Eco88I	CYCGRG	2 cut(s)	20, 371
Eco91I	GGTNACC	1 cut(s)	706
EcoICRI	GAGCTC	2 cut(s)	217, 351
EcoO65I	GGTNACC	1 cut(s)	706
EcoRII	CCWGG	2 cut(s)	424, 471
EcoRV	GATATC	1 cut(s)	88
EcoT38I	GRGCYC	2 cut(s)	219, 353
Esp3I	CGTCTC	1 cut(s)	396
FaeI	CATG	2 cut(s)	58, 70
FaiI	YATR	7 cut(s)	56, 68, 107, 222, 336, 695, 908
FatI	CATG	2 cut(s)	54, 66
FbaI	TGATCA	2 cut(s)	553, 567
FblI	GTMKAC	1 cut(s)	963
Fnu4HI	GCNGC	3 cut(s)	165, 379, 816
FokI	GGATG	1 cut(s)	71
FriOI	GRGCYC	2 cut(s)	219, 353
Fsp4HI	GCNGC	3 cut(s)	165, 379, 816
FspBI	CTAG	1 cut(s)	819
GlaI	GCGC	1 cut(s)	518
GluI	GCNGC	3 cut(s)	165, 379, 816
GsuI	CTGGAG	1 cut(s)	819
HaeIII	GGCC	2 cut(s)	160, 593
HapII	CCGG	3 cut(s)	78, 621, 800
HhaI	GCGC	1 cut(s)	519
Hin1II	CATG	2 cut(s)	58, 70
Hin6I	GCGC	1 cut(s)	517
HinP1I	GCGC	1 cut(s)	517
HindIII	AAGCTT	2 cut(s)	13, 262
HpaII	CCGG	3 cut(s)	78, 621, 800
HphI	GGTGA	4 cut(s)	122, 201, 521, 700
Hpy166II	GTNNAC	4 cut(s)	443, 464, 773, 964
Hpy188I	TCNGA	6 cut(s)	118, 172, 202, 553, 670, 942
Hpy188III	TCNNGA	7 cut(s)	29, 136, 149, 346, 371, 373, 632
Hpy8I	GTNNAC	4 cut(s)	443, 464, 773, 964
Hpy99I	CGWCG	1 cut(s)	656
HpyAV	CCTTC	2 cut(s)	286, 583
HpyCH4III	ACNGT	5 cut(s)	437, 543, 701, 723, 809
HpyCH4IV	ACGT	3 cut(s)	155, 651, 775
HpyCH4V	TGCA	4 cut(s)	697, 759, 891, 928
HpyF10VI	GCNNNNNNNGC	3 cut(s)	453, 679, 765
HpyF3I	CTNAG	2 cut(s)	213, 683
HpySE526I	ACGT	3 cut(s)	155, 651, 775
Hsp92II	CATG	2 cut(s)	58, 70
HspAI	GCGC	1 cut(s)	517
Ksp22I	TGATCA	2 cut(s)	553, 567
Kzo9I	GATC	7 cut(s)	25, 61, 172, 553, 567, 628, 922
LguI	GCTCTTC	1 cut(s)	846
LmnI	GCTCC	2 cut(s)	348, 386
Lsp1109I	GCAGC	2 cut(s)	390, 802
LweI	GCATC	1 cut(s)	878
MaeI	CTAG	1 cut(s)	819
MaeII	ACGT	3 cut(s)	155, 651, 775
MaeIII	GTNAC	4 cut(s)	110, 509, 706, 776
MalI	GATC	7 cut(s)	27, 63, 174, 555, 569, 630, 924
MboI	GATC	7 cut(s)	25, 61, 172, 553, 567, 628, 922
MflI	RGATCY	1 cut(s)	25
MhlI	GDGCHC	2 cut(s)	219, 353
MluCI	AATT	1 cut(s)	341
MlyI	GAGTC	5 cut(s)	107, 113, 495, 506, 709
MmeI	TCCRAC	3 cut(s)	141, 213, 848
MseI	TTAA	1 cut(s)	243
MspA1I	CMGCKG	1 cut(s)	815
MspI	CCGG	3 cut(s)	78, 621, 800
MspR9I	CCNGG	5 cut(s)	78, 426, 473, 622, 800
MvaI	CCWGG	2 cut(s)	426, 473
MvnI	CGCG	1 cut(s)	517
MwoI	GCNNNNNNNGC	3 cut(s)	453, 679, 765
NciI	CCSGG	3 cut(s)	78, 622, 800
NdeII	GATC	7 cut(s)	25, 61, 172, 553, 567, 628, 922
NlaIII	CATG	2 cut(s)	58, 70
NlaIV	GGNNCC	1 cut(s)	744
NmuCI	GTSAC	3 cut(s)	110, 509, 706
PaeR7I	CTCGAG	1 cut(s)	371
PciSI	GCTCTTC	1 cut(s)	846
PfeI	GAWTC	5 cut(s)	203, 299, 320, 656, 937
PfoI	TCCNGGA	3 cut(s)	471, 620, 798
PkrI	GCNGC	3 cut(s)	166, 380, 817
PleI	GAGTC	5 cut(s)	107, 113, 494, 506, 709
PmaCI	CACGTG	1 cut(s)	156
PmlI	CACGTG	1 cut(s)	156
PpsI	GAGTC	5 cut(s)	107, 113, 494, 506, 709
Ppu21I	YACGTR	1 cut(s)	156
Psp124BI	GAGCTC	2 cut(s)	219, 353
Psp6I	CCWGG	2 cut(s)	424, 471
PspCI	CACGTG	1 cut(s)	156
PspEI	GGTNACC	1 cut(s)	706
PspGI	CCWGG	2 cut(s)	424, 471
PspN4I	GGNNCC	1 cut(s)	744
PspPI	GGNCC	3 cut(s)	138, 734, 743
PsrI	GAACNNNNNNTAC	2 cut(s)	935, 967
PsuI	RGATCY	1 cut(s)	25
PvuII	CAGCTG	1 cut(s)	815
RsaI	GTAC	2 cut(s)	774, 806
RsaNI	GTAC	2 cut(s)	773, 805
SacI	GAGCTC	2 cut(s)	219, 353
SapI	GCTCTTC	1 cut(s)	846
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	3 cut(s)	165, 379, 816
Sau3AI	GATC	7 cut(s)	25, 61, 172, 553, 567, 628, 922
Sau96I	GGNCC	3 cut(s)	138, 734, 743
SchI	GAGTC	5 cut(s)	107, 113, 495, 506, 709
ScrFI	CCNGG	5 cut(s)	78, 426, 473, 622, 800
SduI	GDGCHC	2 cut(s)	219, 353
SfaNI	GCATC	1 cut(s)	878
Sfr274I	CTCGAG	1 cut(s)	371
SinI	GGWCC	3 cut(s)	138, 734, 743
SlaI	CTCGAG	1 cut(s)	371
SmlI	CTYRAG	2 cut(s)	352, 371
SmoI	CTYRAG	2 cut(s)	352, 371
Sse9I	AATT	1 cut(s)	341
SsiI	CCGC	4 cut(s)	165, 504, 680, 768
SspMI	CTAG	1 cut(s)	819
SstI	GAGCTC	2 cut(s)	219, 353
StyD4I	CCNGG	5 cut(s)	76, 424, 471, 620, 798
TaaI	ACNGT	5 cut(s)	437, 543, 701, 723, 809
TaiI	ACGT	3 cut(s)	158, 654, 778
TaqI	TCGA	4 cut(s)	90, 308, 372, 654
TasI	AATT	1 cut(s)	341
TauI	GCSGC	1 cut(s)	167
TfiI	GAWTC	5 cut(s)	203, 299, 320, 656, 937
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	5 cut(s)	322, 366, 704, 728, 898
TseFI	GTSAC	3 cut(s)	110, 509, 706
TseI	GCWGC	2 cut(s)	378, 815
Tsp45I	GTSAC	3 cut(s)	110, 509, 706
TspDTI	ATGAA	2 cut(s)	195, 312
TspGWI	ACGGA	1 cut(s)	216
TspRI	CASTG	5 cut(s)	322, 366, 704, 728, 898
VpaK11BI	GGWCC	3 cut(s)	138, 734, 743
XhoI	CTCGAG	1 cut(s)	371
XmiI	GTMKAC	1 cut(s)	963
XspI	CTAG	1 cut(s)	819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.