Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0012520

Physical Location & Seq

Genomic Coordinates Reverse (-)

13640593 .. 13643145

Gene Structure 2553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00293350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGATCACACCCAACTTCGTCGACGAGATTGACTGCGGAAGCTTCTTCGATAACATCGACGACCTCATGGAGGACGTCGACTCCGTCCTCGGCCCCGCCCCCGACTGCAACTCCGCCTTCCCTTCCTCCCTCTCCCTCTGGGACGGCCACTCCTCCGCCGCCGCTCCTCTCCCGCCTCCCGACGCCGCCGTATTCTCCGGCAACGGCGACTCCGACTTCTCCTCCGAGCTCCCGGTTCCGTATGAAGAGATGGTTCATTTGGAATGGCTGTCCAACTTTGTTGAGAATTCCGAGTACTCTGGTGGAAACCTCACCATCAACAAGCAACAGGAGTCTTCCCTGGTCAACAAGGAGTCTTCCCACCAACCGTTCCAGACCTCCAGCCCCATTTCTGTGCTTGACAGCAGCAGCTCCTGCTCGGGCGAGAAGAATGTGCTTGAAGGATCGATTGCCCCTGGCAGGCGGGGACGTGCTAGAAGCAAGCGTCCACGCCCTGCCACCTTCAATCCTCGCTCGGCAATTCAGCTAATTTCCCCTGCTTCCTCTGTTTCGGAGATTGACAACCCTCTGCAGCAGCATTCGTTGTTTGCCCCTAAGGTGTTTTCGGACTCTGAGAACTTTGCAGAGTCTCGTCCTGTGGGATCAGTCAGGAAGTGCTTGCATTGTGAGATTACCAAGACACCCCAGTGGAGGGCAGGCCCAATGGGGCCAAAAACCCTTTGCAATGCCTGTGGAGTGCGCTACAAGTCAGGCAGGCTCTTCCCCGAGTACCGTCCTGCAGCTAGTCCAACTTTTGTTCCGGCCTTGCACTCCAATTCCCACAAGAAGGTTATTGAGATGAGAACCAAGGGTGGCGAGATGGCTGCTGTTCCCGATAACAGCATCCCAGAACTCATTCCAAATAACAACAGCAGCATTTCGCTGGATTACATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090351 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

311

Amino Acids

33.69

Weight (kDa)

5.12

Isoelectric Point (pI)

63.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	219 - 252	1.9e-14	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54810 AT3G54810
fragaria_vesca	FvH4_7g19340 FvH4_7g19340 FvH4_7g19340
malus_domestica	MD01G1108000.v1.1 MD07G1173900.v1.1
prunus_persica	Prupe.2G212900_v2.0.a1 Prupe.2G212900_v2.0.a1
pyrus_communis	pycom01g13490 pycom07g16830
rosa_chinensis	RchiOBHm_Chr1g0363221
rosa_laevigata	RLG00000027582
rosa_multiflora	Rmu_sc0001770.1_g000004
rosa_roxburghii	Rroxscaffold_4G00293350
rosa_samantha	Rh1AG314400 Rh1CG294300 Rh1DG308700
rosa_wichuraiana	Rw1G027860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	78
AccBSI	CCGCTC	1 cut(s)	164
AccI	GTMKAC	2 cut(s)	21, 78
AciI	CCGC	9 cut(s)	36, 96, 114, 156, 159, 162, 173, 186, 463
AclWI	GGATC	2 cut(s)	451, 649
AcoI	YGGCCR	1 cut(s)	145
AcsI	RAATTY	1 cut(s)	286
AcyI	GRCGYC	2 cut(s)	75, 183
AfaI	GTAC	2 cut(s)	296, 770
AfiI	CCNNNNNNNGG	5 cut(s)	70, 459, 690, 691, 826
AflIII	ACRYGT	1 cut(s)	930
AgsI	TTSAA	2 cut(s)	440, 505
AjiI	CACGTC	1 cut(s)	470
AjnI	CCWGG	2 cut(s)	339, 454
AleI	CACNNNNGTG	1 cut(s)	685
AluBI	AGCT	5 cut(s)	42, 229, 411, 526, 782
AluI	AGCT	5 cut(s)	42, 229, 411, 526, 782
Alw21I	GWGCWC	1 cut(s)	231
Alw26I	GTCTC	1 cut(s)	633
AlwI	GGATC	2 cut(s)	451, 649
AlwNI	CAGNNNCTG	1 cut(s)	414
Ama87I	CYCGRG	2 cut(s)	418, 764
AoxI	GGCC	5 cut(s)	91, 145, 697, 707, 801
ApeKI	GCWGC	7 cut(s)	405, 408, 571, 574, 779, 863, 912
ApoI	RAATTY	1 cut(s)	286
Asp700I	GAANNNNTTC	1 cut(s)	894
AspLEI	GCGC	1 cut(s)	741
AspS9I	GGNCC	3 cut(s)	92, 698, 707
AsuC2I	CCSGG	1 cut(s)	233
AsuHPI	GGTGA	1 cut(s)	304
AvaI	CYCGRG	2 cut(s)	418, 764
AxyI	CCTNAGG	1 cut(s)	594
BanII	GRGCYC	1 cut(s)	231
BbsI	GAAGAC	2 cut(s)	327, 348
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	7 cut(s)	417, 420, 583, 586, 791, 850, 924
BccI	CCATC	3 cut(s)	244, 323, 853
BceAI	ACGGC	3 cut(s)	160, 173, 220
BcgI	CGANNNNNNTGC	2 cut(s)	845, 879
BciT130I	CCWGG	2 cut(s)	341, 456
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	233
BcoDI	GTCTC	1 cut(s)	633
BfaI	CTAG	2 cut(s)	474, 783
BfmI	CTRYAG	2 cut(s)	569, 777
BmcAI	AGTACT	1 cut(s)	296
Bme1390I	CCNGG	3 cut(s)	233, 341, 456
BmeT110I	CYCGRG	2 cut(s)	418, 764
BmgBI	CACGTC	1 cut(s)	470
BmgT120I	GGNCC	3 cut(s)	92, 698, 707
BmiI	GGNNCC	3 cut(s)	94, 237, 708
BmrFI	CCNGG	3 cut(s)	233, 341, 456
BmrI	ACTGGG	1 cut(s)	679
BmsI	GCATC	1 cut(s)	891
BmuI	ACTGGG	1 cut(s)	679
BpiI	GAAGAC	2 cut(s)	327, 348
BpmI	CTGGAG	1 cut(s)	364
BpuMI	CCSGG	1 cut(s)	233
Bsa29I	ATCGAT	1 cut(s)	446
BsaHI	GRCGYC	2 cut(s)	75, 183
BsaJI	CCNNGG	4 cut(s)	88, 339, 454, 846
Bsc4I	CCNNNNNNNGG	5 cut(s)	70, 459, 690, 691, 826
Bse1I	ACTGG	1 cut(s)	685
Bse21I	CCTNAGG	1 cut(s)	594
Bse3DI	GCAATG	1 cut(s)	730
BseBI	CCWGG	2 cut(s)	341, 456
BseCI	ATCGAT	1 cut(s)	446
BseDI	CCNNGG	4 cut(s)	88, 339, 454, 846
BseGI	GGATG	1 cut(s)	882
BseLI	CCNNNNNNNGG	5 cut(s)	70, 459, 690, 691, 826
BseMI	GCAATG	1 cut(s)	730
BseMII	CTCAG	1 cut(s)	603
BseNI	ACTGG	1 cut(s)	685
BseRI	GAGGAG	3 cut(s)	142, 156, 211
BseXI	GCAGC	7 cut(s)	417, 420, 583, 586, 791, 850, 924
BshFI	GGCC	5 cut(s)	93, 147, 699, 709, 803
BshVI	ATCGAT	1 cut(s)	446
BsiHKAI	GWGCWC	1 cut(s)	231
BsiHKCI	CYCGRG	2 cut(s)	418, 764
BsiSI	CCGG	3 cut(s)	198, 233, 800
BslFI	GGGAC	2 cut(s)	155, 480
BslI	CCNNNNNNNGG	5 cut(s)	70, 459, 690, 691, 826
BsmAI	GTCTC	1 cut(s)	633
BsmFI	GGGAC	2 cut(s)	155, 480
BsmI	GAATGC	1 cut(s)	577
BsnI	GGCC	5 cut(s)	93, 147, 699, 709, 803
BsoBI	CYCGRG	2 cut(s)	418, 764
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	3 cut(s)	3, 443, 641
BspACI	CCGC	9 cut(s)	36, 96, 114, 156, 159, 162, 173, 186, 463
BspANI	GGCC	5 cut(s)	93, 147, 699, 709, 803
BspCNI	CTCAG	1 cut(s)	604
BspDI	ATCGAT	1 cut(s)	446
BspLI	GGNNCC	3 cut(s)	94, 237, 708
BspMAI	CTGCAG	2 cut(s)	573, 781
BspPI	GGATC	2 cut(s)	451, 649
BspQI	GCTCTTC	1 cut(s)	764
BsrBI	CCGCTC	1 cut(s)	164
BsrDI	GCAATG	1 cut(s)	730
BsrI	ACTGG	1 cut(s)	685
BssECI	CCNNGG	4 cut(s)	88, 339, 454, 846
BssMI	GATC	3 cut(s)	3, 443, 641
BssNI	GRCGYC	2 cut(s)	75, 183
BssT1I	CCWWGG	1 cut(s)	846
Bst2UI	CCWGG	2 cut(s)	341, 456
Bst4CI	ACNGT	2 cut(s)	369, 773
Bst6I	CTCTTC	2 cut(s)	240, 764
BstACI	GRCGYC	2 cut(s)	75, 183
BstAPI	GCANNNNNTGC	1 cut(s)	414
BstC8I	GCNNGC	5 cut(s)	461, 482, 659, 697, 755
BstDEI	CTNAG	2 cut(s)	594, 612
BstENI	CCTNNNNNAGG	1 cut(s)	68
BstF5I	GGATG	1 cut(s)	882
BstHHI	GCGC	1 cut(s)	741
BstKTI	GATC	3 cut(s)	6, 446, 644
BstMAI	GTCTC	1 cut(s)	633
BstMBI	GATC	3 cut(s)	3, 443, 641
BstMWI	GCNNNNNNNGC	1 cut(s)	414
BstNI	CCWGG	2 cut(s)	341, 456
BstNSI	RCATGY	1 cut(s)	934
BstSCI	CCNGG	3 cut(s)	231, 339, 454
BstSFI	CTRYAG	2 cut(s)	569, 777
BstV1I	GCAGC	7 cut(s)	417, 420, 583, 586, 791, 850, 924
BstV2I	GAAGAC	2 cut(s)	327, 348
Bsu15I	ATCGAT	1 cut(s)	446
Bsu36I	CCTNAGG	1 cut(s)	594
BsuRI	GGCC	5 cut(s)	93, 147, 699, 709, 803
BsuTUI	ATCGAT	1 cut(s)	446
BtrI	CACGTC	1 cut(s)	470
BtsCI	GGATG	1 cut(s)	882
BtsIMutI	CAGTG	1 cut(s)	692
Cac8I	GCNNGC	5 cut(s)	461, 482, 659, 697, 755
CaiI	CAGNNNCTG	1 cut(s)	414
CfoI	GCGC	1 cut(s)	741
Cfr13I	GGNCC	3 cut(s)	92, 698, 707
ClaI	ATCGAT	1 cut(s)	446
CseI	GACGC	2 cut(s)	191, 473
Csp6I	GTAC	2 cut(s)	295, 769
CspCI	CAANNNNNGTGG	2 cut(s)	712, 747
CviAII	CATG	2 cut(s)	67, 931
CviQI	GTAC	2 cut(s)	295, 769
DdeI	CTNAG	2 cut(s)	594, 612
DpnI	GATC	3 cut(s)	5, 445, 643
DpnII	GATC	3 cut(s)	3, 443, 641
EaeI	YGGCCR	1 cut(s)	145
Eam1104I	CTCTTC	2 cut(s)	240, 764
EarI	CTCTTC	2 cut(s)	240, 764
EciI	GGCGGA	2 cut(s)	103, 145
Ecl136II	GAGCTC	1 cut(s)	229
Eco130I	CCWWGG	1 cut(s)	846
Eco24I	GRGCYC	1 cut(s)	231
Eco53kI	GAGCTC	1 cut(s)	229
Eco81I	CCTNAGG	1 cut(s)	594
Eco88I	CYCGRG	2 cut(s)	418, 764
EcoICRI	GAGCTC	1 cut(s)	229
EcoNI	CCTNNNNNAGG	1 cut(s)	68
EcoRI	GAATTC	1 cut(s)	286
EcoRII	CCWGG	2 cut(s)	339, 454
EcoT14I	CCWWGG	1 cut(s)	846
EcoT38I	GRGCYC	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	846
FaeI	CATG	2 cut(s)	70, 934
FaiI	YATR	3 cut(s)	68, 243, 932
FaqI	GGGAC	2 cut(s)	155, 480
FatI	CATG	2 cut(s)	66, 930
FauI	CCCGC	3 cut(s)	103, 180, 456
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	2 cut(s)	21, 78
FokI	GGATG	1 cut(s)	869
FriOI	GRGCYC	1 cut(s)	231
FspBI	CTAG	2 cut(s)	474, 783
GlaI	GCGC	1 cut(s)	740
GsuI	CTGGAG	1 cut(s)	364
HaeIII	GGCC	5 cut(s)	93, 147, 699, 709, 803
HapII	CCGG	3 cut(s)	198, 233, 800
HgaI	GACGC	2 cut(s)	191, 473
HhaI	GCGC	1 cut(s)	741
Hin1I	GRCGYC	2 cut(s)	75, 183
Hin1II	CATG	2 cut(s)	70, 934
Hin6I	GCGC	1 cut(s)	739
HinP1I	GCGC	1 cut(s)	739
HincII	GTYRAC	3 cut(s)	22, 79, 346
HindII	GTYRAC	3 cut(s)	22, 79, 346
HindIII	AAGCTT	1 cut(s)	40
HinfI	GANTC	6 cut(s)	80, 209, 332, 353, 608, 626
HpaII	CCGG	3 cut(s)	198, 233, 800
HphI	GGTGA	1 cut(s)	304
Hpy166II	GTNNAC	4 cut(s)	22, 79, 346, 488
Hpy188I	TCNGA	6 cut(s)	214, 226, 292, 553, 607, 613
Hpy188III	TCNNGA	4 cut(s)	179, 373, 649, 872
Hpy8I	GTNNAC	4 cut(s)	22, 79, 346, 488
Hpy99I	CGWCG	5 cut(s)	23, 26, 62, 80, 185
HpyAV	CCTTC	5 cut(s)	127, 132, 434, 511, 820
HpyCH4III	ACNGT	2 cut(s)	369, 773
HpyCH4IV	ACGT	2 cut(s)	75, 469
HpyCH4V	TGCA	7 cut(s)	108, 571, 623, 661, 723, 779, 808
HpyF10VI	GCNNNNNNNGC	1 cut(s)	414
HpyF3I	CTNAG	2 cut(s)	594, 612
HpySE526I	ACGT	2 cut(s)	75, 469
Hsp92I	GRCGYC	2 cut(s)	75, 183
Hsp92II	CATG	2 cut(s)	70, 934
HspAI	GCGC	1 cut(s)	739
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 443, 641
LguI	GCTCTTC	1 cut(s)	764
LmnI	GCTCC	3 cut(s)	169, 234, 416
Lsp1109I	GCAGC	7 cut(s)	417, 420, 583, 586, 791, 850, 924
LweI	GCATC	1 cut(s)	891
MaeI	CTAG	2 cut(s)	474, 783
MaeII	ACGT	2 cut(s)	75, 469
MalI	GATC	3 cut(s)	5, 445, 643
MbiI	CCGCTC	1 cut(s)	164
MboI	GATC	3 cut(s)	3, 443, 641
MboII	GAAGA	6 cut(s)	37, 257, 327, 348, 439, 751
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	4 cut(s)	286, 519, 528, 814
MlyI	GAGTC	6 cut(s)	74, 203, 341, 362, 602, 635
MmeI	TCCRAC	3 cut(s)	237, 297, 812
MroXI	GAANNNNTTC	1 cut(s)	894
MslI	CAYNNNNRTG	2 cut(s)	392, 685
MspI	CCGG	3 cut(s)	198, 233, 800
MspR9I	CCNGG	3 cut(s)	233, 341, 456
Mva1269I	GAATGC	1 cut(s)	577
MvaI	CCWGG	2 cut(s)	341, 456
MwoI	GCNNNNNNNGC	1 cut(s)	414
NciI	CCSGG	1 cut(s)	233
NdeII	GATC	3 cut(s)	3, 443, 641
NlaIII	CATG	2 cut(s)	70, 934
NlaIV	GGNNCC	3 cut(s)	94, 237, 708
NmeAIII	GCCGAG	2 cut(s)	69, 494
NspI	RCATGY	1 cut(s)	934
OliI	CACNNNNGTG	1 cut(s)	685
PciI	ACATGT	1 cut(s)	930
PciSI	GCTCTTC	1 cut(s)	764
PcsI	WCGNNNNNNNCGW	3 cut(s)	54, 81, 210
PctI	GAATGC	1 cut(s)	577
PdmI	GAANNNNTTC	1 cut(s)	894
PflFI	GACNNNGTC	1 cut(s)	83
PleI	GAGTC	6 cut(s)	74, 203, 340, 361, 602, 634
PpsI	GAGTC	6 cut(s)	74, 203, 340, 361, 602, 634
PscI	ACATGT	1 cut(s)	930
Psp124BI	GAGCTC	1 cut(s)	231
Psp6I	CCWGG	2 cut(s)	339, 454
PspGI	CCWGG	2 cut(s)	339, 454
PspN4I	GGNNCC	3 cut(s)	94, 237, 708
PspPI	GGNCC	3 cut(s)	92, 698, 707
PstI	CTGCAG	2 cut(s)	573, 781
PstNI	CAGNNNCTG	1 cut(s)	414
PsyI	GACNNNGTC	1 cut(s)	83
RsaI	GTAC	2 cut(s)	296, 770
RsaNI	GTAC	2 cut(s)	295, 769
RseI	CAYNNNNRTG	2 cut(s)	392, 685
SacI	GAGCTC	1 cut(s)	231
SalI	GTCGAC	2 cut(s)	20, 77
SapI	GCTCTTC	1 cut(s)	764
Sau3AI	GATC	3 cut(s)	3, 443, 641
Sau96I	GGNCC	3 cut(s)	92, 698, 707
ScaI	AGTACT	1 cut(s)	296
SchI	GAGTC	6 cut(s)	74, 203, 341, 362, 602, 635
ScrFI	CCNGG	3 cut(s)	233, 341, 456
SduI	GDGCHC	1 cut(s)	231
SfaNI	GCATC	1 cut(s)	891
SfcI	CTRYAG	2 cut(s)	569, 777
SgrDI	CGTCGACG	1 cut(s)	20
SmiMI	CAYNNNNRTG	2 cut(s)	392, 685
Sse9I	AATT	4 cut(s)	286, 519, 528, 814
SsiI	CCGC	9 cut(s)	36, 96, 114, 156, 159, 162, 173, 186, 463
SspMI	CTAG	2 cut(s)	474, 783
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	3 cut(s)	231, 339, 454
StyI	CCWWGG	1 cut(s)	846
TaaI	ACNGT	2 cut(s)	369, 773
TaiI	ACGT	2 cut(s)	78, 472
TaqI	TCGA	5 cut(s)	21, 48, 57, 78, 446
TasI	AATT	4 cut(s)	286, 519, 528, 814
TatI	WGTACW	1 cut(s)	294
TauI	GCSGC	3 cut(s)	161, 164, 188
TscAI	CASTG	1 cut(s)	692
TseI	GCWGC	7 cut(s)	405, 408, 571, 574, 779, 863, 912
TspDTI	ATGAA	2 cut(s)	245, 258
TspGWI	ACGGA	2 cut(s)	73, 228
TspRI	CASTG	1 cut(s)	692
Tth111I	GACNNNGTC	1 cut(s)	83
XagI	CCTNNNNNAGG	1 cut(s)	68
XapI	RAATTY	1 cut(s)	286
XceI	RCATGY	1 cut(s)	934
XmiI	GTMKAC	2 cut(s)	21, 78
XmnI	GAANNNNTTC	1 cut(s)	894
XspI	CTAG	2 cut(s)	474, 783
ZraI	GACGTC	1 cut(s)	76
ZrmI	AGTACT	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.