MD07G1173900.v1.1

Transcriptional activator that specifically binds 5'- GATA-3' or 5'-GAT-3' motifs within gene promoters

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Forward (+)
25189189 .. 25192100
2912 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1173900.v1.1.491

Sequence Viewer

Length: 1056 bp
ATGATCGGACAGAGCTTTATCGACGATATAGACTGCGGGAGCCTGTTCGACACCATCGACGACCTCCTCGATTTCCCAACGGACGACGTGGAGTCCGCCCTCGGCCCCGCCCCCGACTGCAACGCCGCTTTCAACTCCTCCTCCCTCTGGCCCAGCCAGTCCGCCTCCCTCCAGCCACCCAATGAAGCCGTCTTCTCCGGCAACTCCGCCTCAGACCTCTCCGCCGAGCTCGACGTTCCGATTGAAGACATTGTTCAATTGGAATGGCTGTCAAACTTCTGCGAGGATTCCTTCTCCGGTGGAAGCCTAACGATCAACAAACCAGACAACTCCTTCGTCAACAACGAATCATCCCACCGGCAGTTCCAGACCTCCAGCCCCATTTCCGTCCTCGACAGCAGCAGCTCCTGCTCCGTCGAGAAGAATGTGCCGCAAAGCCCTGGCCCGGTGGTTCCTGGCAAGCGCGGACGCGCTCGCAGCAAGCGTCCCCGCCCAGCTACATTCAACCCTCGTCCCGCAATTCAACTCATTTCCCCTGCCTCCTCTGTTACTGAGGCCGAGGCCCTTCAGCATCAGCCTTTGCTCCCTCCGAAGCTCCATTCGGATTCTGAGAATTTCGCAGAGTCCCGTCCTGTGATCAAGATACCGAGGCAAGCTTCCGGGGAGCAGAAGAAGAAAAAGAAGATCAAGTTGACGCTTCCCCAGGCTCCGGCAGAGGGAAATCAAAGTTCCGGCACCACTCAGGGAGCAGTGAGAAAGTGCTTGCATTGTGAGATTACTAAGACACCCCAGTGGAGGGCAGGCCCAATGGGGCCAAAAACTCTTTGCAATGCCTGTGGCGTCCGCTACAAGTCAGGCCGGCTCTTCCCTGAGTACCGGCCTGCTGCCAGCCCTACCTTTGTCCCAGCCTTGCACTCCAATTCCCACAAGAAGGTTATCGAGATGAGAAACAAGGGCGGCGAACTGGTCCCTTTCGGAGAGACCGCAAGAGCAATGACCGAAACTCCAGAGCTCATCCCCAATGCTAACCACAGCATTTCGCTGGATTACATGTGA

Protein Analysis

352

Amino Acids

37.94

Weight (kDa)

6.02

Isoelectric Point (pI)

60.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATA PF00320 254 - 287 2.2e-14 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012520)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 734
AccII CGCG 2 cut(s) 465, 471
AcsI RAATTY 1 cut(s) 613
AcuI CTGAAG 1 cut(s) 551
AcyI GRCGYC 1 cut(s) 840
AfaI GTAC 1 cut(s) 875
AfiI CCNNNNNNNGG 7 cut(s) 147, 445, 709, 716, 795, 796, 931
AflIII ACRYGT 1 cut(s) 1050
AgsI TTSAA 5 cut(s) 133, 245, 257, 505, 524
AhdI GACNNNNNGTC 1 cut(s) 91
AjiI CACGTC 1 cut(s) 88
AjnI CCWGG 3 cut(s) 439, 454, 702
AleI CACNNNNGTG 1 cut(s) 790
AluBI AGCT 7 cut(s) 15, 229, 405, 497, 595, 656, 1012
AluI AGCT 7 cut(s) 15, 229, 405, 497, 595, 656, 1012
Alw21I GWGCWC 2 cut(s) 231, 1014
Alw26I GTCTC 1 cut(s) 974
AlwNI CAGNNNCTG 1 cut(s) 408
AoxI GGCC 9 cut(s) 103, 149, 442, 555, 561, 802, 812, 856, 878
ApeKI GCWGC 4 cut(s) 399, 402, 477, 884
ApoI RAATTY 1 cut(s) 613
ArsI GACNNNNNNTTYG 2 cut(s) 317, 349
AspLEI GCGC 2 cut(s) 465, 473
AspS9I GGNCC 7 cut(s) 104, 150, 443, 562, 803, 812, 967
AsuC2I CCSGG 2 cut(s) 446, 661
AvaII GGWCC 1 cut(s) 967
BanI GGYRCC 1 cut(s) 734
BanII GRGCYC 2 cut(s) 231, 1014
BbsI GAAGAC 2 cut(s) 184, 252
Bbv12I GWGCWC 2 cut(s) 231, 1014
BbvI GCAGC 4 cut(s) 411, 414, 489, 871
BccI CCATC 1 cut(s) 62
BceAI ACGGC 1 cut(s) 173
BciT130I CCWGG 3 cut(s) 441, 456, 704
BclI TGATCA 1 cut(s) 636
BcnI CCSGG 2 cut(s) 446, 661
BcoDI GTCTC 1 cut(s) 974
BisI GCNGC 7 cut(s) 126, 400, 403, 431, 478, 885, 958
BlsI GCNGC 7 cut(s) 127, 401, 404, 432, 479, 886, 959
Bme1390I CCNGG 5 cut(s) 441, 446, 456, 661, 704
Bme18I GGWCC 1 cut(s) 967
BmeRI GACNNNNNGTC 1 cut(s) 91
BmgBI CACGTC 1 cut(s) 88
BmgT120I GGNCC 7 cut(s) 104, 150, 443, 562, 803, 812, 967
BmiI GGNNCC 7 cut(s) 41, 106, 453, 708, 736, 813, 969
BmrFI CCNGG 5 cut(s) 441, 446, 456, 661, 704
BmrI ACTGGG 1 cut(s) 784
BmsI GCATC 1 cut(s) 580
BmuI ACTGGG 1 cut(s) 784
BpiI GAAGAC 2 cut(s) 184, 252
BpmI CTGGAG 3 cut(s) 155, 358, 990
BpuMI CCSGG 2 cut(s) 446, 661
BsaHI GRCGYC 1 cut(s) 840
BsaI GGTCTC 1 cut(s) 974
BsaJI CCNNGG 6 cut(s) 100, 439, 558, 647, 660, 702
BsaWI WCCGGW 1 cut(s) 296
BsaXI ACNNNNNCTCC 4 cut(s) 125, 155, 988, 1018
Bsc4I CCNNNNNNNGG 7 cut(s) 147, 445, 709, 716, 795, 796, 931
Bse118I RCCGGY 3 cut(s) 357, 858, 876
Bse1I ACTGG 3 cut(s) 157, 790, 969
Bse3DI GCAATG 2 cut(s) 835, 999
BseBI CCWGG 3 cut(s) 441, 456, 704
BseDI CCNNGG 6 cut(s) 100, 439, 558, 647, 660, 702
BseGI GGATG 2 cut(s) 350, 1014
BseLI CCNNNNNNNGG 7 cut(s) 147, 445, 709, 716, 795, 796, 931
BseMI GCAATG 2 cut(s) 835, 999
BseMII CTCAG 5 cut(s) 225, 543, 600, 755, 861
BseNI ACTGG 3 cut(s) 157, 790, 969
BseRI GAGGAG 4 cut(s) 56, 127, 130, 532
BseXI GCAGC 4 cut(s) 411, 414, 489, 871
BseYI CCCAGC 3 cut(s) 152, 493, 904
Bsh1236I CGCG 2 cut(s) 465, 471
BshFI GGCC 9 cut(s) 105, 151, 444, 557, 563, 804, 814, 858, 880
BshNI GGYRCC 1 cut(s) 734
BsiHKAI GWGCWC 2 cut(s) 231, 1014
BsiSI CCGG 9 cut(s) 198, 297, 358, 446, 660, 710, 732, 859, 877
BslFI GGGAC 5 cut(s) 471, 498, 610, 887, 953
BslI CCNNNNNNNGG 7 cut(s) 147, 445, 709, 716, 795, 796, 931
BsmAI GTCTC 1 cut(s) 974
BsmFI GGGAC 5 cut(s) 471, 498, 610, 887, 953
BsnI GGCC 9 cut(s) 105, 151, 444, 557, 563, 804, 814, 858, 880
Bso31I GGTCTC 1 cut(s) 974
Bsp1286I GDGCHC 2 cut(s) 231, 1014
Bsp143I GATC 4 cut(s) 3, 312, 636, 684
BspANI GGCC 9 cut(s) 105, 151, 444, 557, 563, 804, 814, 858, 880
BspCNI CTCAG 5 cut(s) 224, 544, 601, 754, 862
BspFNI CGCG 2 cut(s) 465, 471
BspLI GGNNCC 7 cut(s) 41, 106, 453, 708, 736, 813, 969
BspQI GCTCTTC 1 cut(s) 869
BspT107I GGYRCC 1 cut(s) 734
BspTNI GGTCTC 1 cut(s) 974
BsrDI GCAATG 2 cut(s) 835, 999
BsrFI RCCGGY 3 cut(s) 357, 858, 876
BsrI ACTGG 3 cut(s) 157, 790, 969
BssAI RCCGGY 3 cut(s) 357, 858, 876
BssECI CCNNGG 6 cut(s) 100, 439, 558, 647, 660, 702
BssMI GATC 4 cut(s) 3, 312, 636, 684
BssNI GRCGYC 1 cut(s) 840
Bst2UI CCWGG 3 cut(s) 441, 456, 704
Bst6I CTCTTC 1 cut(s) 869
BstACI GRCGYC 1 cut(s) 840
BstAPI GCANNNNNTGC 1 cut(s) 408
BstC8I GCNNGC 9 cut(s) 461, 475, 482, 654, 764, 802, 860, 882, 889
BstDEI CTNAG 6 cut(s) 211, 552, 609, 741, 780, 870
BstF5I GGATG 2 cut(s) 350, 1014
BstFNI CGCG 2 cut(s) 465, 471
BstHHI GCGC 2 cut(s) 465, 473
BstKTI GATC 4 cut(s) 6, 315, 639, 687
BstMAI GTCTC 1 cut(s) 974
BstMBI GATC 4 cut(s) 3, 312, 636, 684
BstMWI GCNNNNNNNGC 2 cut(s) 408, 477
BstNI CCWGG 3 cut(s) 441, 456, 704
BstNSI RCATGY 1 cut(s) 1054
BstSCI CCNGG 5 cut(s) 439, 444, 454, 659, 702
BstUI CGCG 2 cut(s) 465, 471
BstV1I GCAGC 4 cut(s) 411, 414, 489, 871
BstV2I GAAGAC 2 cut(s) 184, 252
BsuRI GGCC 9 cut(s) 105, 151, 444, 557, 563, 804, 814, 858, 880
BtrI CACGTC 1 cut(s) 88
BtsCI GGATG 2 cut(s) 350, 1014
BtsI GCAGTG 1 cut(s) 756
BtsIMutI CAGTG 2 cut(s) 756, 797
Cac8I GCNNGC 9 cut(s) 461, 475, 482, 654, 764, 802, 860, 882, 889
CaiI CAGNNNCTG 1 cut(s) 408
CfoI GCGC 2 cut(s) 465, 473
Cfr10I RCCGGY 3 cut(s) 357, 858, 876
Cfr13I GGNCC 7 cut(s) 104, 150, 443, 562, 803, 812, 967
CseI GACGC 4 cut(s) 473, 477, 703, 829
Csp6I GTAC 1 cut(s) 874
CspCI CAANNNNNGTGG 2 cut(s) 817, 852
CviAII CATG 1 cut(s) 1051
CviQI GTAC 1 cut(s) 874
DdeI CTNAG 6 cut(s) 211, 552, 609, 741, 780, 870
DpnI GATC 4 cut(s) 5, 314, 638, 686
DpnII GATC 4 cut(s) 3, 312, 636, 684
DriI GACNNNNNGTC 1 cut(s) 91
Eam1104I CTCTTC 1 cut(s) 869
Eam1105I GACNNNNNGTC 1 cut(s) 91
EarI CTCTTC 1 cut(s) 869
EciI GGCGGA 4 cut(s) 85, 151, 196, 211
Ecl136II GAGCTC 2 cut(s) 229, 1012
Eco24I GRGCYC 2 cut(s) 231, 1014
Eco31I GGTCTC 1 cut(s) 974
Eco47I GGWCC 1 cut(s) 967
Eco53kI GAGCTC 2 cut(s) 229, 1012
Eco57I CTGAAG 1 cut(s) 551
EcoICRI GAGCTC 2 cut(s) 229, 1012
EcoO109I RGGNCCY 1 cut(s) 562
EcoRII CCWGG 3 cut(s) 439, 454, 702
EcoT38I GRGCYC 2 cut(s) 231, 1014
FaeI CATG 1 cut(s) 1054
FaiI YATR 2 cut(s) 29, 1052
FaqI GGGAC 5 cut(s) 471, 498, 610, 887, 953
FatI CATG 1 cut(s) 1050
FauI CCCGC 4 cut(s) 29, 115, 497, 523
FbaI TGATCA 1 cut(s) 636
Fnu4HI GCNGC 7 cut(s) 126, 400, 403, 431, 478, 885, 958
FokI GGATG 2 cut(s) 337, 1001
FriOI GRGCYC 2 cut(s) 231, 1014
Fsp4HI GCNGC 7 cut(s) 126, 400, 403, 431, 478, 885, 958
GlaI GCGC 2 cut(s) 464, 472
GluI GCNGC 7 cut(s) 126, 400, 403, 431, 478, 885, 958
GsaI CCCAGC 3 cut(s) 156, 497, 908
GsuI CTGGAG 3 cut(s) 155, 358, 990
HaeIII GGCC 9 cut(s) 105, 151, 444, 557, 563, 804, 814, 858, 880
HapII CCGG 9 cut(s) 198, 297, 358, 446, 660, 710, 732, 859, 877
HgaI GACGC 4 cut(s) 473, 477, 703, 829
HhaI GCGC 2 cut(s) 465, 473
Hin1I GRCGYC 1 cut(s) 840
Hin1II CATG 1 cut(s) 1054
Hin6I GCGC 2 cut(s) 463, 471
HinP1I GCGC 2 cut(s) 463, 471
HincII GTYRAC 2 cut(s) 340, 693
HindII GTYRAC 2 cut(s) 340, 693
HindIII AAGCTT 1 cut(s) 654
HinfI GANTC 5 cut(s) 92, 287, 347, 605, 623
HpaII CCGG 9 cut(s) 198, 297, 358, 446, 660, 710, 732, 859, 877
Hpy166II GTNNAC 2 cut(s) 340, 693
Hpy188I TCNGA 7 cut(s) 8, 214, 240, 591, 604, 610, 977
Hpy188III TCNNGA 5 cut(s) 367, 418, 640, 940, 1007
Hpy8I GTNNAC 2 cut(s) 340, 693
Hpy99I CGWCG 5 cut(s) 26, 62, 89, 236, 419
HpyAV CCTTC 4 cut(s) 301, 343, 575, 925
HpyCH4IV ACGT 2 cut(s) 87, 234
HpyCH4V TGCA 4 cut(s) 120, 766, 828, 913
HpyF10VI GCNNNNNNNGC 2 cut(s) 408, 477
HpyF3I CTNAG 6 cut(s) 211, 552, 609, 741, 780, 870
HpySE526I ACGT 2 cut(s) 87, 234
Hsp92I GRCGYC 1 cut(s) 840
Hsp92II CATG 1 cut(s) 1054
HspAI GCGC 2 cut(s) 463, 471
KroI GCCGGC 1 cut(s) 858
KroNI GCCGGC 1 cut(s) 860
Ksp22I TGATCA 1 cut(s) 636
Kzo9I GATC 4 cut(s) 3, 312, 636, 684
LguI GCTCTTC 1 cut(s) 869
LmnI GCTCC 8 cut(s) 39, 410, 416, 588, 600, 664, 712, 746
Lsp1109I GCAGC 4 cut(s) 411, 414, 489, 871
LweI GCATC 1 cut(s) 580
MaeII ACGT 2 cut(s) 87, 234
MaeIII GTNAC 1 cut(s) 547
MalI GATC 4 cut(s) 5, 314, 638, 686
MboI GATC 4 cut(s) 3, 312, 636, 684
MboII GAAGA 7 cut(s) 184, 257, 433, 682, 685, 694, 856
MfeI CAATTG 1 cut(s) 257
MhlI GDGCHC 2 cut(s) 231, 1014
MluCI AATT 4 cut(s) 257, 519, 613, 919
MlyI GAGTC 2 cut(s) 101, 632
MroNI GCCGGC 1 cut(s) 858
MslI CAYNNNNRTG 1 cut(s) 790
MspI CCGG 9 cut(s) 198, 297, 358, 446, 660, 710, 732, 859, 877
MspR9I CCNGG 5 cut(s) 441, 446, 456, 661, 704
MunI CAATTG 1 cut(s) 257
MvaI CCWGG 3 cut(s) 441, 456, 704
MvnI CGCG 2 cut(s) 465, 471
MwoI GCNNNNNNNGC 2 cut(s) 408, 477
NaeI GCCGGC 1 cut(s) 860
NciI CCSGG 2 cut(s) 446, 661
NdeII GATC 4 cut(s) 3, 312, 636, 684
NgoMIV GCCGGC 1 cut(s) 858
NlaIII CATG 1 cut(s) 1054
NlaIV GGNNCC 7 cut(s) 41, 106, 453, 708, 736, 813, 969
NmeAIII GCCGAG 3 cut(s) 81, 250, 583
NspI RCATGY 1 cut(s) 1054
OliI CACNNNNGTG 1 cut(s) 790
PciI ACATGT 1 cut(s) 1050
PciSI GCTCTTC 1 cut(s) 869
PcsI WCGNNNNNNNCGW 4 cut(s) 54, 66, 342, 481
PdiI GCCGGC 1 cut(s) 860
PfeI GAWTC 3 cut(s) 287, 347, 605
PkrI GCNGC 7 cut(s) 127, 401, 404, 432, 479, 886, 959
PleI GAGTC 2 cut(s) 100, 631
PpsI GAGTC 2 cut(s) 100, 631
PscI ACATGT 1 cut(s) 1050
Psp124BI GAGCTC 2 cut(s) 231, 1014
Psp6I CCWGG 3 cut(s) 439, 454, 702
PspFI CCCAGC 3 cut(s) 152, 493, 904
PspGI CCWGG 3 cut(s) 439, 454, 702
PspN4I GGNNCC 7 cut(s) 41, 106, 453, 708, 736, 813, 969
PspPI GGNCC 7 cut(s) 104, 150, 443, 562, 803, 812, 967
PstNI CAGNNNCTG 1 cut(s) 408
RsaI GTAC 1 cut(s) 875
RsaNI GTAC 1 cut(s) 874
RseI CAYNNNNRTG 1 cut(s) 790
SacI GAGCTC 2 cut(s) 231, 1014
SapI GCTCTTC 1 cut(s) 869
SatI GCNGC 7 cut(s) 126, 400, 403, 431, 478, 885, 958
Sau3AI GATC 4 cut(s) 3, 312, 636, 684
Sau96I GGNCC 7 cut(s) 104, 150, 443, 562, 803, 812, 967
SchI GAGTC 2 cut(s) 101, 632
ScrFI CCNGG 5 cut(s) 441, 446, 456, 661, 704
SduI GDGCHC 2 cut(s) 231, 1014
SfaNI GCATC 1 cut(s) 580
SinI GGWCC 1 cut(s) 967
SmiMI CAYNNNNRTG 1 cut(s) 790
Sse9I AATT 4 cut(s) 257, 519, 613, 919
SstI GAGCTC 2 cut(s) 231, 1014
StyD4I CCNGG 5 cut(s) 439, 444, 454, 659, 702
TaiI ACGT 2 cut(s) 90, 237
TaqI TCGA 8 cut(s) 21, 48, 57, 69, 231, 393, 417, 939
TaqII GACCGA 1 cut(s) 1013
TasI AATT 4 cut(s) 257, 519, 613, 919
TauI GCSGC 3 cut(s) 128, 433, 960
TfiI GAWTC 3 cut(s) 287, 347, 605
TscAI CASTG 2 cut(s) 756, 797
TseI GCWGC 4 cut(s) 399, 402, 477, 884
TspDTI ATGAA 1 cut(s) 198
TspGWI ACGGA 3 cut(s) 95, 376, 403
TspRI CASTG 2 cut(s) 756, 797
VpaK11BI GGWCC 1 cut(s) 967
XapI RAATTY 1 cut(s) 613
XceI RCATGY 1 cut(s) 1054
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.