Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0012520

Physical Location & Seq

Genomic Coordinates Forward (+)

55354074 .. 55355746

Gene Structure 1673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G027860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGATCACACCCAACTTCGTCGACGAGATTGACTGCGGAAGCTTCTTCGATAACATCGACGACCTCATGGAGGACGTCGACTCCGTCCTCGGCCCCGCCCCCGACTGCAACTCCGCCTTCCCTTCCTCCCTCTCCCTCTGGGACGGCCACTCCTCCGCCGCCGTGCCTCTCCCCCCTCCCGACGCCGCCGTATTCTCCGGCAACGGCGACTCCGACTTCTCCTCCGAGCTCCCGGTTCCGTATGAAGAGATGGTTCATTTGGAATGGCTGTCCAACTTTGTTGAGAATTCCGAGTACTCTGGCGTAAACCTCACCATCAACAAGCAACAGGAGTCTTCCCTGGTCAACAAGGAGTCTTCCCACCAACAGTTCCAGACATCCAGCCCCATTTCTGTGCTTGACAGCAGCAGCTCCTGCTCGGGCGAGAAGAATAAGCAAGCGTCCACGCCCTGCCACCTTCAATCCTCGCTCGCAATTCAACTGATTTCCCCTGCTTCCTCTGTTTCGGAGATTGACAACCCTCTGCAGCAGCATTCGTTGTTTGCCCCTAAGGTGTTTTCGGACTCTGAGAACTTTGCAGAGTCTCGTCCTGTGGTGAAGATGCCCAAACAAGCTTCCGGGGAGCAGAAGAAGAAGAAGAGAATCAAGTTGCCCCCTCCCCCTAAGGTTCCAGGGGAGCTGAATGAGGATACCCCAGTGCAGGGATCAGTCAGGAAGTGCTTGCATTGTGAGATTACCAAGACACCCCAGTGGAGGGCAGGCCCAATGGGGCCGAAAACCCTTTGCAATGCCTGTGGAGTGCGCTACAAGTCAGGCAGGCTCTTCCCTGAGTACCGTCCTGCAGCTAGTCCAACTTTTGTTCCGGCCTTGCACTCCAATTCCCACAAGAAGGTTATCGAGATGAGAACCAAGGGTGGCGAGATGGCTGCTGTTCCCGATAACAGCATCCCAGAGCTCATTCCGAATAACAACAGCAGCATTTCGCTGGATTACATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090351 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

332

Amino Acids

36.1

Weight (kDa)

5.15

Isoelectric Point (pI)

64.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	240 - 273	2e-14	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54810 AT3G54810
fragaria_vesca	FvH4_7g19340 FvH4_7g19340 FvH4_7g19340
malus_domestica	MD01G1108000.v1.1 MD07G1173900.v1.1
prunus_persica	Prupe.2G212900_v2.0.a1 Prupe.2G212900_v2.0.a1
pyrus_communis	pycom01g13490 pycom07g16830
rosa_chinensis	RchiOBHm_Chr1g0363221
rosa_laevigata	RLG00000027582
rosa_multiflora	Rmu_sc0001770.1_g000004
rosa_roxburghii	Rroxscaffold_4G00293350
rosa_samantha	Rh1AG314400 Rh1CG294300 Rh1DG308700
rosa_wichuraiana	Rw1G027860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	78
AccI	GTMKAC	2 cut(s)	21, 78
AciI	CCGC	6 cut(s)	36, 96, 114, 156, 159, 186
AclWI	GGATC	1 cut(s)	712
AcoI	YGGCCR	1 cut(s)	145
AcsI	RAATTY	1 cut(s)	286
AcyI	GRCGYC	2 cut(s)	75, 183
AfaI	GTAC	2 cut(s)	296, 833
AfiI	CCNNNNNNNGG	6 cut(s)	70, 700, 701, 753, 754, 889
AflIII	ACRYGT	1 cut(s)	993
AgsI	TTSAA	2 cut(s)	461, 479
AjnI	CCWGG	2 cut(s)	339, 670
AleI	CACNNNNGTG	1 cut(s)	748
AluBI	AGCT	7 cut(s)	42, 229, 411, 614, 679, 845, 955
AluI	AGCT	7 cut(s)	42, 229, 411, 614, 679, 845, 955
Alw21I	GWGCWC	2 cut(s)	231, 957
Alw26I	GTCTC	1 cut(s)	588
AlwI	GGATC	1 cut(s)	712
AlwNI	CAGNNNCTG	1 cut(s)	414
Ama87I	CYCGRG	1 cut(s)	418
AoxI	GGCC	5 cut(s)	91, 145, 760, 770, 864
ApeKI	GCWGC	7 cut(s)	405, 408, 526, 529, 842, 926, 975
ApoI	RAATTY	1 cut(s)	286
AspLEI	GCGC	1 cut(s)	804
AspS9I	GGNCC	3 cut(s)	92, 761, 770
AsuC2I	CCSGG	2 cut(s)	233, 619
AsuHPI	GGTGA	2 cut(s)	304, 607
AvaI	CYCGRG	1 cut(s)	418
AxyI	CCTNAGG	2 cut(s)	549, 663
BaeI	ACNNNNGTAYC	2 cut(s)	681, 714
BanII	GRGCYC	2 cut(s)	231, 957
BbsI	GAAGAC	2 cut(s)	327, 348
Bbv12I	GWGCWC	2 cut(s)	231, 957
BbvI	GCAGC	7 cut(s)	417, 420, 538, 541, 854, 913, 987
BccI	CCATC	3 cut(s)	244, 323, 916
BceAI	ACGGC	4 cut(s)	146, 160, 173, 220
BcgI	CGANNNNNNTGC	2 cut(s)	908, 942
BciT130I	CCWGG	2 cut(s)	341, 672
BciVI	GTATCC	1 cut(s)	682
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	2 cut(s)	233, 619
BcoDI	GTCTC	1 cut(s)	588
BfaI	CTAG	1 cut(s)	846
BfmI	CTRYAG	2 cut(s)	524, 840
BfuI	GTATCC	1 cut(s)	682
BisI	GCNGC	9 cut(s)	159, 186, 406, 409, 527, 530, 843, 927, 976
BlsI	GCNGC	9 cut(s)	160, 187, 407, 410, 528, 531, 844, 928, 977
BmcAI	AGTACT	1 cut(s)	296
Bme1390I	CCNGG	4 cut(s)	233, 341, 619, 672
BmeT110I	CYCGRG	1 cut(s)	418
BmgT120I	GGNCC	3 cut(s)	92, 761, 770
BmiI	GGNNCC	4 cut(s)	94, 237, 669, 771
BmrFI	CCNGG	4 cut(s)	233, 341, 619, 672
BmrI	ACTGGG	2 cut(s)	689, 742
BmsI	GCATC	2 cut(s)	591, 954
BmuI	ACTGGG	2 cut(s)	689, 742
BpiI	GAAGAC	2 cut(s)	327, 348
BpuMI	CCSGG	2 cut(s)	233, 619
BsaHI	GRCGYC	2 cut(s)	75, 183
BsaJI	CCNNGG	5 cut(s)	88, 339, 618, 671, 909
Bsc4I	CCNNNNNNNGG	6 cut(s)	70, 700, 701, 753, 754, 889
Bse1I	ACTGG	2 cut(s)	695, 748
Bse21I	CCTNAGG	2 cut(s)	549, 663
Bse3DI	GCAATG	1 cut(s)	793
BseBI	CCWGG	2 cut(s)	341, 672
BseDI	CCNNGG	5 cut(s)	88, 339, 618, 671, 909
BseGI	GGATG	2 cut(s)	377, 945
BseLI	CCNNNNNNNGG	6 cut(s)	70, 700, 701, 753, 754, 889
BseMI	GCAATG	1 cut(s)	793
BseMII	CTCAG	2 cut(s)	558, 819
BseNI	ACTGG	2 cut(s)	695, 748
BseRI	GAGGAG	2 cut(s)	142, 211
BseXI	GCAGC	7 cut(s)	417, 420, 538, 541, 854, 913, 987
BsgI	GTGCAG	1 cut(s)	719
BshFI	GGCC	5 cut(s)	93, 147, 762, 772, 866
BsiHKAI	GWGCWC	2 cut(s)	231, 957
BsiHKCI	CYCGRG	1 cut(s)	418
BsiSI	CCGG	4 cut(s)	198, 233, 618, 863
BslFI	GGGAC	1 cut(s)	155
BslI	CCNNNNNNNGG	6 cut(s)	70, 700, 701, 753, 754, 889
BsmAI	GTCTC	1 cut(s)	588
BsmFI	GGGAC	1 cut(s)	155
BsmI	GAATGC	1 cut(s)	532
BsnI	GGCC	5 cut(s)	93, 147, 762, 772, 866
BsoBI	CYCGRG	1 cut(s)	418
Bsp1286I	GDGCHC	2 cut(s)	231, 957
Bsp143I	GATC	2 cut(s)	3, 704
BspACI	CCGC	6 cut(s)	36, 96, 114, 156, 159, 186
BspANI	GGCC	5 cut(s)	93, 147, 762, 772, 866
BspCNI	CTCAG	2 cut(s)	559, 820
BspLI	GGNNCC	4 cut(s)	94, 237, 669, 771
BspMAI	CTGCAG	2 cut(s)	528, 844
BspPI	GGATC	1 cut(s)	712
BspQI	GCTCTTC	1 cut(s)	827
BsrDI	GCAATG	1 cut(s)	793
BsrI	ACTGG	2 cut(s)	695, 748
BssECI	CCNNGG	5 cut(s)	88, 339, 618, 671, 909
BssMI	GATC	2 cut(s)	3, 704
BssNI	GRCGYC	2 cut(s)	75, 183
BssT1I	CCWWGG	1 cut(s)	909
Bst2UI	CCWGG	2 cut(s)	341, 672
Bst4CI	ACNGT	2 cut(s)	369, 836
Bst6I	CTCTTC	3 cut(s)	240, 632, 827
BstACI	GRCGYC	2 cut(s)	75, 183
BstAPI	GCANNNNNTGC	1 cut(s)	414
BstC8I	GCNNGC	5 cut(s)	438, 471, 722, 760, 818
BstDEI	CTNAG	4 cut(s)	549, 567, 663, 828
BstENI	CCTNNNNNAGG	1 cut(s)	68
BstF5I	GGATG	2 cut(s)	377, 945
BstHHI	GCGC	1 cut(s)	804
BstKTI	GATC	2 cut(s)	6, 707
BstMAI	GTCTC	1 cut(s)	588
BstMBI	GATC	2 cut(s)	3, 704
BstMWI	GCNNNNNNNGC	1 cut(s)	414
BstNI	CCWGG	2 cut(s)	341, 672
BstNSI	RCATGY	1 cut(s)	997
BstSCI	CCNGG	4 cut(s)	231, 339, 617, 670
BstSFI	CTRYAG	2 cut(s)	524, 840
BstV1I	GCAGC	7 cut(s)	417, 420, 538, 541, 854, 913, 987
BstV2I	GAAGAC	2 cut(s)	327, 348
Bsu36I	CCTNAGG	2 cut(s)	549, 663
BsuI	GTATCC	1 cut(s)	682
BsuRI	GGCC	5 cut(s)	93, 147, 762, 772, 866
BtsCI	GGATG	2 cut(s)	377, 945
BtsIMutI	CAGTG	2 cut(s)	702, 755
Cac8I	GCNNGC	5 cut(s)	438, 471, 722, 760, 818
CaiI	CAGNNNCTG	1 cut(s)	414
CfoI	GCGC	1 cut(s)	804
Cfr13I	GGNCC	3 cut(s)	92, 761, 770
CseI	GACGC	2 cut(s)	191, 429
Csp6I	GTAC	2 cut(s)	295, 832
CspCI	CAANNNNNGTGG	2 cut(s)	775, 810
CviAII	CATG	2 cut(s)	67, 994
CviQI	GTAC	2 cut(s)	295, 832
DdeI	CTNAG	4 cut(s)	549, 567, 663, 828
DpnI	GATC	2 cut(s)	5, 706
DpnII	GATC	2 cut(s)	3, 704
EaeI	YGGCCR	1 cut(s)	145
Eam1104I	CTCTTC	3 cut(s)	240, 632, 827
EarI	CTCTTC	3 cut(s)	240, 632, 827
EciI	GGCGGA	2 cut(s)	103, 145
Ecl136II	GAGCTC	2 cut(s)	229, 955
Eco130I	CCWWGG	1 cut(s)	909
Eco24I	GRGCYC	2 cut(s)	231, 957
Eco53kI	GAGCTC	2 cut(s)	229, 955
Eco81I	CCTNAGG	2 cut(s)	549, 663
Eco88I	CYCGRG	1 cut(s)	418
EcoICRI	GAGCTC	2 cut(s)	229, 955
EcoNI	CCTNNNNNAGG	1 cut(s)	68
EcoRI	GAATTC	1 cut(s)	286
EcoRII	CCWGG	2 cut(s)	339, 670
EcoT14I	CCWWGG	1 cut(s)	909
EcoT38I	GRGCYC	2 cut(s)	231, 957
ErhI	CCWWGG	1 cut(s)	909
FaeI	CATG	2 cut(s)	70, 997
FaiI	YATR	3 cut(s)	68, 243, 995
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	2 cut(s)	66, 993
FauI	CCCGC	1 cut(s)	103
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	2 cut(s)	21, 78
Fnu4HI	GCNGC	9 cut(s)	159, 186, 406, 409, 527, 530, 843, 927, 976
FokI	GGATG	2 cut(s)	364, 932
FriOI	GRGCYC	2 cut(s)	231, 957
Fsp4HI	GCNGC	9 cut(s)	159, 186, 406, 409, 527, 530, 843, 927, 976
FspBI	CTAG	1 cut(s)	846
GlaI	GCGC	1 cut(s)	803
GluI	GCNGC	9 cut(s)	159, 186, 406, 409, 527, 530, 843, 927, 976
HaeIII	GGCC	5 cut(s)	93, 147, 762, 772, 866
HapII	CCGG	4 cut(s)	198, 233, 618, 863
HgaI	GACGC	2 cut(s)	191, 429
HhaI	GCGC	1 cut(s)	804
Hin1I	GRCGYC	2 cut(s)	75, 183
Hin1II	CATG	2 cut(s)	70, 997
Hin6I	GCGC	1 cut(s)	802
HinP1I	GCGC	1 cut(s)	802
HincII	GTYRAC	3 cut(s)	22, 79, 346
HindII	GTYRAC	3 cut(s)	22, 79, 346
HindIII	AAGCTT	2 cut(s)	40, 612
HinfI	GANTC	7 cut(s)	80, 209, 332, 353, 563, 581, 642
HpaII	CCGG	4 cut(s)	198, 233, 618, 863
HphI	GGTGA	2 cut(s)	304, 607
Hpy166II	GTNNAC	5 cut(s)	22, 79, 307, 346, 444
Hpy188I	TCNGA	7 cut(s)	214, 226, 292, 508, 562, 568, 963
Hpy188III	TCNNGA	5 cut(s)	179, 373, 712, 898, 935
Hpy8I	GTNNAC	5 cut(s)	22, 79, 307, 346, 444
Hpy99I	CGWCG	5 cut(s)	23, 26, 62, 80, 185
HpyAV	CCTTC	4 cut(s)	127, 132, 467, 883
HpyCH4III	ACNGT	2 cut(s)	369, 836
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	8 cut(s)	108, 526, 578, 700, 724, 786, 842, 871
HpyF10VI	GCNNNNNNNGC	1 cut(s)	414
HpyF3I	CTNAG	4 cut(s)	549, 567, 663, 828
HpySE526I	ACGT	1 cut(s)	75
Hsp92I	GRCGYC	2 cut(s)	75, 183
Hsp92II	CATG	2 cut(s)	70, 997
HspAI	GCGC	1 cut(s)	802
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 704
LguI	GCTCTTC	1 cut(s)	827
LmnI	GCTCC	4 cut(s)	234, 416, 622, 676
Lsp1109I	GCAGC	7 cut(s)	417, 420, 538, 541, 854, 913, 987
LweI	GCATC	2 cut(s)	591, 954
MaeI	CTAG	1 cut(s)	846
MaeII	ACGT	1 cut(s)	75
MalI	GATC	2 cut(s)	5, 706
MboI	GATC	2 cut(s)	3, 704
MhlI	GDGCHC	2 cut(s)	231, 957
MluCI	AATT	3 cut(s)	286, 474, 877
MlyI	GAGTC	6 cut(s)	74, 203, 341, 362, 557, 590
MmeI	TCCRAC	3 cut(s)	237, 297, 875
MslI	CAYNNNNRTG	2 cut(s)	392, 748
MspI	CCGG	4 cut(s)	198, 233, 618, 863
MspR9I	CCNGG	4 cut(s)	233, 341, 619, 672
Mva1269I	GAATGC	1 cut(s)	532
MvaI	CCWGG	2 cut(s)	341, 672
MwoI	GCNNNNNNNGC	1 cut(s)	414
NciI	CCSGG	2 cut(s)	233, 619
NdeII	GATC	2 cut(s)	3, 704
NlaIII	CATG	2 cut(s)	70, 997
NlaIV	GGNNCC	4 cut(s)	94, 237, 669, 771
NmeAIII	GCCGAG	1 cut(s)	69
NspI	RCATGY	1 cut(s)	997
OliI	CACNNNNGTG	1 cut(s)	748
PciI	ACATGT	1 cut(s)	993
PciSI	GCTCTTC	1 cut(s)	827
PcsI	WCGNNNNNNNCGW	3 cut(s)	54, 81, 210
PctI	GAATGC	1 cut(s)	532
PfeI	GAWTC	1 cut(s)	642
PflFI	GACNNNGTC	1 cut(s)	83
PkrI	GCNGC	9 cut(s)	160, 187, 407, 410, 528, 531, 844, 928, 977
PleI	GAGTC	6 cut(s)	74, 203, 340, 361, 557, 589
PpsI	GAGTC	6 cut(s)	74, 203, 340, 361, 557, 589
PscI	ACATGT	1 cut(s)	993
Psp124BI	GAGCTC	2 cut(s)	231, 957
Psp6I	CCWGG	2 cut(s)	339, 670
PspGI	CCWGG	2 cut(s)	339, 670
PspN4I	GGNNCC	4 cut(s)	94, 237, 669, 771
PspPI	GGNCC	3 cut(s)	92, 761, 770
PstI	CTGCAG	2 cut(s)	528, 844
PstNI	CAGNNNCTG	1 cut(s)	414
PsyI	GACNNNGTC	1 cut(s)	83
RsaI	GTAC	2 cut(s)	296, 833
RsaNI	GTAC	2 cut(s)	295, 832
RseI	CAYNNNNRTG	2 cut(s)	392, 748
SacI	GAGCTC	2 cut(s)	231, 957
SalI	GTCGAC	2 cut(s)	20, 77
SapI	GCTCTTC	1 cut(s)	827
SatI	GCNGC	9 cut(s)	159, 186, 406, 409, 527, 530, 843, 927, 976
Sau3AI	GATC	2 cut(s)	3, 704
Sau96I	GGNCC	3 cut(s)	92, 761, 770
ScaI	AGTACT	1 cut(s)	296
SchI	GAGTC	6 cut(s)	74, 203, 341, 362, 557, 590
ScrFI	CCNGG	4 cut(s)	233, 341, 619, 672
SduI	GDGCHC	2 cut(s)	231, 957
SfaNI	GCATC	2 cut(s)	591, 954
SfcI	CTRYAG	2 cut(s)	524, 840
SgrDI	CGTCGACG	1 cut(s)	20
SmiMI	CAYNNNNRTG	2 cut(s)	392, 748
Sse9I	AATT	3 cut(s)	286, 474, 877
SsiI	CCGC	6 cut(s)	36, 96, 114, 156, 159, 186
SspMI	CTAG	1 cut(s)	846
SstI	GAGCTC	2 cut(s)	231, 957
StyD4I	CCNGG	4 cut(s)	231, 339, 617, 670
StyI	CCWWGG	1 cut(s)	909
TaaI	ACNGT	2 cut(s)	369, 836
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	5 cut(s)	21, 48, 57, 78, 897
TasI	AATT	3 cut(s)	286, 474, 877
TatI	WGTACW	1 cut(s)	294
TauI	GCSGC	2 cut(s)	161, 188
TfiI	GAWTC	1 cut(s)	642
TscAI	CASTG	2 cut(s)	702, 755
TseI	GCWGC	7 cut(s)	405, 408, 526, 529, 842, 926, 975
TspDTI	ATGAA	2 cut(s)	245, 258
TspGWI	ACGGA	2 cut(s)	73, 228
TspRI	CASTG	2 cut(s)	702, 755
Tth111I	GACNNNGTC	1 cut(s)	83
XagI	CCTNNNNNAGG	1 cut(s)	68
XapI	RAATTY	1 cut(s)	286
XceI	RCATGY	1 cut(s)	997
XmiI	GTMKAC	2 cut(s)	21, 78
XspI	CTAG	1 cut(s)	846
ZraI	GACGTC	1 cut(s)	76
ZrmI	AGTACT	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.