FvH4_7g19340

Transcriptional activator that specifically binds 5'- GATA-3' or 5'-GAT-3' motifs within gene promoters

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
15963477 .. 15966697
3221 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g19340.t2

Sequence Viewer

Length: 1035 bp
ATGATCACACCGAGCTTCGTCGACGAGATTGACTGCGGCAGCTTCTTCGACAACATCGACGACCTCATGGAGGACGTCGACTCCGTCCTCGGCCCCGCTCCTGACTGTAACTCCGCCTTCTCCCTCTGGCCCGCCGCCTCCTCCGCCGCCGCCGCTCCACTCCCACCTCCCGACGCCGCCGTCTTCTCCGGCAACGGTGACTCCGACTTCTCCTCCGAGCTCCCCGTTCCGTATGAAGAGATGGTGCATTTGGAATGGCTGTCCAACTTTGTTGAGAATTCCGAATACTCTGGCGGAGACCTCACCATGAACAAGCAACAGGAGTCTTACTCCTTGGTCAACAAGGAGTCTTCCCACCAACAGTTCCAGACCTCCAGCCCCATTTCTGTGCTTGACAGCAGCAGCTCCTGCTCGGGCGAGAAGAATGTGCTTGAAGGATCAATTGCTCCTGGCAGGCGGGGACGTGCTAGAAGCAAGCGTCCTCGCCCTGCTACTTTCAATCCTCGCTCTGCAATTCAACTGATTTCCCCTGCTTCCTCTGTCTCGGAGATTGACAACCCTCTTCAGCAGCATTCATTGTTTGCTGCTCCCAAGGTGTTTTCGGAGTCTGAGAACTTTGCTGAGTCTCGTCCTGTGGTGAAGATGCCGAAACTGGCTTCTGGGGAGCAGAAGAAGAAGAAAAGAATCAAGTTGCCCCCTCAGGTTCCAGGGGAGCTGGACGAGAACTCTCCATTGCAGGGAGCAATTAGGAAGTGCTTGCATTGTGAGATTACCAAAACACCCCAGTGGAGGGCAGGCCCAATGGGGCCAAAAACCCTATGCAATGCCTGTGGAGTGCGCTACAAGTCAGGCAGGCTCTTCCCTGAGTACCGTCCTGCAGCTAGTCCAACTTTTGTTCCAGCCTTGCACTCCAATTCCCATAAGAAGGTTCTCGAGATGAGAACCAAGGGTGGCGAGATGGTTTCTGTTCACGACAACAGCCTCCCAGAACTCATTCCGAATACTAACAGCAGCATTTCGCTGGATTACATGTGA

Protein Analysis

345

Amino Acids

37.44

Weight (kDa)

5.59

Isoelectric Point (pI)

62.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATA PF00320 172 - 205 1.5e-14 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012520)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 179
AatII GACGTC 1 cut(s) 78
AccBSI CCGCTC 2 cut(s) 98, 155
AccI GTMKAC 2 cut(s) 21, 78
AclWI GGATC 1 cut(s) 445
AcsI RAATTY 1 cut(s) 277
AcuI CTGAAG 1 cut(s) 548
AcyI GRCGYC 2 cut(s) 75, 174
AfaI GTAC 1 cut(s) 869
AfiI CCNNNNNNNGG 5 cut(s) 70, 737, 789, 790, 925
AflIII ACRYGT 1 cut(s) 1029
AgsI TTSAA 3 cut(s) 434, 499, 518
AjiI CACGTC 1 cut(s) 464
AjnI CCWGG 2 cut(s) 448, 706
AleI CACNNNNGTG 1 cut(s) 784
AluBI AGCT 6 cut(s) 15, 42, 220, 405, 715, 881
AluI AGCT 6 cut(s) 15, 42, 220, 405, 715, 881
Alw21I GWGCWC 1 cut(s) 222
Alw26I GTCTC 3 cut(s) 291, 547, 630
AlwI GGATC 1 cut(s) 445
AlwNI CAGNNNCTG 1 cut(s) 408
Ama87I CYCGRG 2 cut(s) 412, 932
AoxI GGCC 4 cut(s) 91, 128, 796, 806
ApeKI GCWGC 7 cut(s) 39, 399, 402, 568, 584, 878, 1011
ApoI RAATTY 1 cut(s) 277
Asp700I GAANNNNTTC 1 cut(s) 993
AspLEI GCGC 1 cut(s) 840
AspS9I GGNCC 4 cut(s) 92, 129, 797, 806
AsuHPI GGTGA 3 cut(s) 209, 295, 649
AvaI CYCGRG 2 cut(s) 412, 932
AxyI CCTNAGG 1 cut(s) 699
BanII GRGCYC 1 cut(s) 222
BbsI GAAGAC 2 cut(s) 175, 342
Bbv12I GWGCWC 1 cut(s) 222
BbvI GCAGC 7 cut(s) 51, 411, 414, 571, 580, 890, 1023
BccI CCATC 2 cut(s) 235, 952
BceAI ACGGC 1 cut(s) 164
BcgI CGANNNNNNTGC 2 cut(s) 28, 62
BciT130I CCWGG 2 cut(s) 450, 708
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 3 cut(s) 291, 547, 630
BfaI CTAG 2 cut(s) 468, 882
BfmI CTRYAG 1 cut(s) 876
Bme1390I CCNGG 2 cut(s) 450, 708
BmeT110I CYCGRG 2 cut(s) 412, 932
BmgBI CACGTC 1 cut(s) 464
BmgT120I GGNCC 4 cut(s) 92, 129, 797, 806
BmiI GGNNCC 3 cut(s) 94, 705, 807
BmrFI CCNGG 2 cut(s) 450, 708
BmrI ACTGGG 1 cut(s) 778
BmsI GCATC 1 cut(s) 633
BmuI ACTGGG 1 cut(s) 778
BpiI GAAGAC 2 cut(s) 175, 342
BplI GAGNNNNNCTC 2 cut(s) 314, 346
BpmI CTGGAG 1 cut(s) 358
BsaHI GRCGYC 2 cut(s) 75, 174
BsaI GGTCTC 1 cut(s) 291
BsaJI CCNNGG 5 cut(s) 88, 333, 591, 707, 945
BsaXI ACNNNNNCTCC 8 cut(s) 65, 95, 95, 125, 185, 197, 215, 227
Bsc4I CCNNNNNNNGG 5 cut(s) 70, 737, 789, 790, 925
Bse1I ACTGG 2 cut(s) 657, 784
Bse21I CCTNAGG 1 cut(s) 699
Bse3DI GCAATG 2 cut(s) 731, 829
BseBI CCWGG 2 cut(s) 450, 708
BseDI CCNNGG 5 cut(s) 88, 333, 591, 707, 945
BseLI CCNNNNNNNGG 5 cut(s) 70, 737, 789, 790, 925
BseMI GCAATG 2 cut(s) 731, 829
BseMII CTCAG 4 cut(s) 600, 612, 713, 855
BseNI ACTGG 2 cut(s) 657, 784
BseRI GAGGAG 2 cut(s) 130, 202
BseXI GCAGC 7 cut(s) 51, 411, 414, 571, 580, 890, 1023
BshFI GGCC 4 cut(s) 93, 130, 798, 808
BsiHKAI GWGCWC 1 cut(s) 222
BsiHKCI CYCGRG 2 cut(s) 412, 932
BsiSI CCGG 1 cut(s) 189
BslFI GGGAC 1 cut(s) 474
BslI CCNNNNNNNGG 5 cut(s) 70, 737, 789, 790, 925
BsmAI GTCTC 3 cut(s) 291, 547, 630
BsmFI GGGAC 1 cut(s) 474
BsmI GAATGC 1 cut(s) 571
BsnI GGCC 4 cut(s) 93, 130, 798, 808
Bso31I GGTCTC 1 cut(s) 291
BsoBI CYCGRG 2 cut(s) 412, 932
Bsp1286I GDGCHC 1 cut(s) 222
Bsp143I GATC 2 cut(s) 3, 437
BspANI GGCC 4 cut(s) 93, 130, 798, 808
BspCNI CTCAG 4 cut(s) 601, 613, 712, 856
BspLI GGNNCC 3 cut(s) 94, 705, 807
BspMAI CTGCAG 1 cut(s) 880
BspPI GGATC 1 cut(s) 445
BspQI GCTCTTC 1 cut(s) 863
BspTNI GGTCTC 1 cut(s) 291
BsrBI CCGCTC 2 cut(s) 98, 155
BsrDI GCAATG 2 cut(s) 731, 829
BsrI ACTGG 2 cut(s) 657, 784
BssECI CCNNGG 5 cut(s) 88, 333, 591, 707, 945
BssMI GATC 2 cut(s) 3, 437
BssNI GRCGYC 2 cut(s) 75, 174
BssT1I CCWWGG 3 cut(s) 333, 591, 945
Bst2UI CCWGG 2 cut(s) 450, 708
Bst4CI ACNGT 4 cut(s) 107, 197, 363, 872
Bst6I CTCTTC 3 cut(s) 231, 567, 863
BstACI GRCGYC 2 cut(s) 75, 174
BstAPI GCANNNNNTGC 1 cut(s) 408
BstC8I GCNNGC 6 cut(s) 132, 455, 476, 758, 796, 854
BstDEI CTNAG 4 cut(s) 609, 621, 699, 864
BstENI CCTNNNNNAGG 1 cut(s) 68
BstHHI GCGC 1 cut(s) 840
BstKTI GATC 2 cut(s) 6, 440
BstMAI GTCTC 3 cut(s) 291, 547, 630
BstMBI GATC 2 cut(s) 3, 437
BstMWI GCNNNNNNNGC 3 cut(s) 143, 152, 408
BstNI CCWGG 2 cut(s) 450, 708
BstNSI RCATGY 1 cut(s) 1033
BstSCI CCNGG 2 cut(s) 448, 706
BstSFI CTRYAG 1 cut(s) 876
BstV1I GCAGC 7 cut(s) 51, 411, 414, 571, 580, 890, 1023
BstV2I GAAGAC 2 cut(s) 175, 342
Bsu36I CCTNAGG 1 cut(s) 699
BsuRI GGCC 4 cut(s) 93, 130, 798, 808
BtrI CACGTC 1 cut(s) 464
BtsIMutI CAGTG 1 cut(s) 791
Cac8I GCNNGC 6 cut(s) 132, 455, 476, 758, 796, 854
CaiI CAGNNNCTG 1 cut(s) 408
CfoI GCGC 1 cut(s) 840
Cfr13I GGNCC 4 cut(s) 92, 129, 797, 806
CseI GACGC 2 cut(s) 182, 467
Csp6I GTAC 1 cut(s) 868
CspCI CAANNNNNGTGG 2 cut(s) 811, 846
CviAII CATG 3 cut(s) 67, 307, 1030
CviQI GTAC 1 cut(s) 868
DdeI CTNAG 4 cut(s) 609, 621, 699, 864
DpnI GATC 2 cut(s) 5, 439
DpnII GATC 2 cut(s) 3, 437
DrdI GACNNNNNNGTC 1 cut(s) 179
DseDI GACNNNNNNGTC 1 cut(s) 179
Eam1104I CTCTTC 3 cut(s) 231, 567, 863
EarI CTCTTC 3 cut(s) 231, 567, 863
EciI GGCGGA 3 cut(s) 103, 133, 309
Ecl136II GAGCTC 1 cut(s) 220
Eco130I CCWWGG 3 cut(s) 333, 591, 945
Eco24I GRGCYC 1 cut(s) 222
Eco31I GGTCTC 1 cut(s) 291
Eco53kI GAGCTC 1 cut(s) 220
Eco57I CTGAAG 1 cut(s) 548
Eco81I CCTNAGG 1 cut(s) 699
Eco88I CYCGRG 2 cut(s) 412, 932
EcoICRI GAGCTC 1 cut(s) 220
EcoNI CCTNNNNNAGG 1 cut(s) 68
EcoRI GAATTC 1 cut(s) 277
EcoRII CCWGG 2 cut(s) 448, 706
EcoT14I CCWWGG 3 cut(s) 333, 591, 945
EcoT38I GRGCYC 1 cut(s) 222
ErhI CCWWGG 3 cut(s) 333, 591, 945
FaeI CATG 3 cut(s) 70, 310, 1033
FaiI YATR 6 cut(s) 68, 234, 308, 820, 921, 1031
FaqI GGGAC 1 cut(s) 474
FatI CATG 3 cut(s) 66, 306, 1029
FauI CCCGC 3 cut(s) 103, 139, 450
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 2 cut(s) 21, 78
FriOI GRGCYC 1 cut(s) 222
FspBI CTAG 2 cut(s) 468, 882
GlaI GCGC 1 cut(s) 839
GsuI CTGGAG 1 cut(s) 358
HaeIII GGCC 4 cut(s) 93, 130, 798, 808
HapII CCGG 1 cut(s) 189
HgaI GACGC 2 cut(s) 182, 467
HhaI GCGC 1 cut(s) 840
Hin1I GRCGYC 2 cut(s) 75, 174
Hin1II CATG 3 cut(s) 70, 310, 1033
Hin6I GCGC 1 cut(s) 838
HinP1I GCGC 1 cut(s) 838
HincII GTYRAC 3 cut(s) 22, 79, 340
HindII GTYRAC 3 cut(s) 22, 79, 340
HinfI GANTC 7 cut(s) 80, 200, 323, 347, 605, 623, 684
HpaII CCGG 1 cut(s) 189
HphI GGTGA 3 cut(s) 209, 295, 649
Hpy166II GTNNAC 4 cut(s) 22, 79, 340, 970
Hpy188I TCNGA 7 cut(s) 205, 217, 283, 547, 604, 610, 999
Hpy188III TCNNGA 6 cut(s) 101, 170, 367, 932, 934, 971
Hpy8I GTNNAC 4 cut(s) 22, 79, 340, 970
Hpy99I CGWCG 5 cut(s) 23, 26, 62, 80, 176
HpyAV CCTTC 3 cut(s) 127, 428, 919
HpyCH4III ACNGT 4 cut(s) 107, 197, 363, 872
HpyCH4IV ACGT 2 cut(s) 75, 463
HpyCH4V TGCA 7 cut(s) 247, 512, 736, 760, 822, 878, 907
HpyF10VI GCNNNNNNNGC 3 cut(s) 143, 152, 408
HpyF3I CTNAG 4 cut(s) 609, 621, 699, 864
HpySE526I ACGT 2 cut(s) 75, 463
Hsp92I GRCGYC 2 cut(s) 75, 174
Hsp92II CATG 3 cut(s) 70, 310, 1033
HspAI GCGC 1 cut(s) 838
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 2 cut(s) 3, 437
LguI GCTCTTC 1 cut(s) 863
LmnI GCTCC 9 cut(s) 103, 160, 225, 410, 451, 592, 664, 712, 740
Lsp1109I GCAGC 7 cut(s) 51, 411, 414, 571, 580, 890, 1023
LweI GCATC 1 cut(s) 633
MaeI CTAG 2 cut(s) 468, 882
MaeII ACGT 2 cut(s) 75, 463
MaeIII GTNAC 2 cut(s) 107, 197
MalI GATC 2 cut(s) 5, 439
MbiI CCGCTC 2 cut(s) 98, 155
MboI GATC 2 cut(s) 3, 437
MfeI CAATTG 1 cut(s) 441
MhlI GDGCHC 1 cut(s) 222
MluCI AATT 5 cut(s) 277, 441, 513, 744, 913
MlyI GAGTC 6 cut(s) 74, 194, 332, 356, 614, 632
MmeI TCCRAC 3 cut(s) 228, 288, 911
MroXI GAANNNNTTC 1 cut(s) 993
MslI CAYNNNNRTG 2 cut(s) 386, 784
MspI CCGG 1 cut(s) 189
MspR9I CCNGG 2 cut(s) 450, 708
MunI CAATTG 1 cut(s) 441
Mva1269I GAATGC 1 cut(s) 571
MvaI CCWGG 2 cut(s) 450, 708
MwoI GCNNNNNNNGC 3 cut(s) 143, 152, 408
NdeII GATC 2 cut(s) 3, 437
NlaIII CATG 3 cut(s) 70, 310, 1033
NlaIV GGNNCC 3 cut(s) 94, 705, 807
NmeAIII GCCGAG 1 cut(s) 69
NmuCI GTSAC 1 cut(s) 197
NspI RCATGY 1 cut(s) 1033
OliI CACNNNNGTG 1 cut(s) 784
PaeR7I CTCGAG 1 cut(s) 932
PciI ACATGT 1 cut(s) 1029
PciSI GCTCTTC 1 cut(s) 863
PcsI WCGNNNNNNNCGW 3 cut(s) 54, 81, 201
PctI GAATGC 1 cut(s) 571
PdmI GAANNNNTTC 1 cut(s) 993
PfeI GAWTC 1 cut(s) 684
PflFI GACNNNGTC 1 cut(s) 83
PleI GAGTC 6 cut(s) 74, 194, 331, 355, 613, 631
PpsI GAGTC 6 cut(s) 74, 194, 331, 355, 613, 631
PscI ACATGT 1 cut(s) 1029
Psp124BI GAGCTC 1 cut(s) 222
Psp6I CCWGG 2 cut(s) 448, 706
PspGI CCWGG 2 cut(s) 448, 706
PspN4I GGNNCC 3 cut(s) 94, 705, 807
PspPI GGNCC 4 cut(s) 92, 129, 797, 806
PstI CTGCAG 1 cut(s) 880
PstNI CAGNNNCTG 1 cut(s) 408
PsyI GACNNNGTC 1 cut(s) 83
RsaI GTAC 1 cut(s) 869
RsaNI GTAC 1 cut(s) 868
RseI CAYNNNNRTG 2 cut(s) 386, 784
SacI GAGCTC 1 cut(s) 222
SalI GTCGAC 2 cut(s) 20, 77
SapI GCTCTTC 1 cut(s) 863
Sau3AI GATC 2 cut(s) 3, 437
Sau96I GGNCC 4 cut(s) 92, 129, 797, 806
SchI GAGTC 6 cut(s) 74, 194, 332, 356, 614, 632
ScrFI CCNGG 2 cut(s) 450, 708
SduI GDGCHC 1 cut(s) 222
SfaNI GCATC 1 cut(s) 633
SfcI CTRYAG 1 cut(s) 876
Sfr274I CTCGAG 1 cut(s) 932
SgrDI CGTCGACG 1 cut(s) 20
SlaI CTCGAG 1 cut(s) 932
SmiMI CAYNNNNRTG 2 cut(s) 386, 784
SmlI CTYRAG 1 cut(s) 932
SmoI CTYRAG 1 cut(s) 932
Sse9I AATT 5 cut(s) 277, 441, 513, 744, 913
SspMI CTAG 2 cut(s) 468, 882
SstI GAGCTC 1 cut(s) 222
StyD4I CCNGG 2 cut(s) 448, 706
StyI CCWWGG 3 cut(s) 333, 591, 945
TaaI ACNGT 4 cut(s) 107, 197, 363, 872
TaiI ACGT 2 cut(s) 78, 466
TaqI TCGA 5 cut(s) 21, 48, 57, 78, 933
TasI AATT 5 cut(s) 277, 441, 513, 744, 913
TauI GCSGC 6 cut(s) 39, 137, 149, 152, 155, 179
TfiI GAWTC 1 cut(s) 684
TscAI CASTG 1 cut(s) 791
TseFI GTSAC 1 cut(s) 197
TseI GCWGC 7 cut(s) 39, 399, 402, 568, 584, 878, 1011
Tsp45I GTSAC 1 cut(s) 197
TspDTI ATGAA 3 cut(s) 249, 323, 564
TspGWI ACGGA 2 cut(s) 73, 219
TspRI CASTG 1 cut(s) 791
Tth111I GACNNNGTC 1 cut(s) 83
XagI CCTNNNNNAGG 1 cut(s) 68
XapI RAATTY 1 cut(s) 277
XceI RCATGY 1 cut(s) 1033
XhoI CTCGAG 1 cut(s) 932
XmiI GTMKAC 2 cut(s) 21, 78
XmnI GAANNNNTTC 1 cut(s) 993
XspI CTAG 2 cut(s) 468, 882
ZraI GACGTC 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.