MD01G1108000.v1.1

Transcriptional activator that specifically binds 5'- GATA-3' or 5'-GAT-3' motifs within gene promoters

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Forward (+)
22082886 .. 22086167
3282 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1108000.v1.1.491

Sequence Viewer

Length: 1056 bp
ATGATCGTACCGAACTATATCGACGATATAGACTGCGGGAGCCTCTTCGACACCATCGACGACCTCCTCGATTTCCCAACCGACGACGTCGAGTCCGCCCTAGGCCCCGCCCCCAACTGCGACGCCGCCTTCAACTCCTCCTCCCTCTGGCCCGGCCATTCCGGCTCGCTCCAGCCTCCCAACGACGCCGTCTTCTCCTGCAACTCCGCCTCCGACCTCTCCGCCGAGCTCGACGTTCCGATTGAAGACATTGTTCAATTGGAATGGCTGTCAAACTTCTGTGAGGATTCCTTCTCTGGAGGAAGCCTCACAATCAACAAACCGGACATCTCCTTCATCAACAGGGAACCGTCCCACCAGCAGTTCCAGACCTCCAGCCCGATTTCCGTCCTCGACAGCAGCAGCTCTTGCTCCGTCGAGAAGAATGTGCCGCAAAGCCCTGGCGCGGTGGTCCCTGGCAAGCGTGGACGCGCTCGCAGCAAGCGCCCCCGCCCGGCCACATTCAACCCTCGTTCCGCAATTCAACTCATTTCCCCTGCTTCCTCTGTTACCGAGGCAGAGGCCCTTCAGCATCAGCAGTTGCTCCCTCCGAAGGTCCATTCGGATTCTGAGAATTTCGCAGAGTCCCGTCCTGTGATCAAGATACCAAGGCAAGCTTCCGGGGAGCAGAAGAAGAAAAAGAAGATCAAGTTGACGCTTCCCCAGGCTCCCGCGGAGGGAAATCAAAGCTCCGGCACTACTCAGGGAGCAGTGAGGAAATGCTTGCATTGTGAGATCACCAAGACACCCCAGTGGAGGGCAGGCCCAATGGGGCCGAAAACCCTATGCAATGCCTGTGGCGTCCGCTACAAGTCAGGCCGTCTCTTCCCTGAGTACCGGCCCGCTGCCAGTCCCACCTTTGTTCCGGCCTTGCACTCCAATTCCCACAAGAAGGTTATCGAGATGAGAAACAAAGGCGGGGAAGTGGTTCCCTTTGGAGAGACCACAACAGCAATGACCGAAACTCCAGAGCTCATCCCCAATACTAACCACAGCATTTCGCTGGATTACATGTGA

Protein Analysis

352

Amino Acids

38.0

Weight (kDa)

5.94

Isoelectric Point (pI)

57.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATA PF00320 254 - 287 2.2e-14 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012520)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 90
AccII CGCG 3 cut(s) 446, 471, 713
AcoI YGGCCR 2 cut(s) 154, 495
AcsI RAATTY 1 cut(s) 613
AcuI CTGAAG 1 cut(s) 551
AcyI GRCGYC 4 cut(s) 87, 123, 186, 840
AfaI GTAC 2 cut(s) 9, 875
AfiI CCNNNNNNNGG 8 cut(s) 147, 445, 493, 592, 716, 795, 796, 931
AflIII ACRYGT 1 cut(s) 1050
AgsI TTSAA 5 cut(s) 133, 245, 257, 505, 524
AhdI GACNNNNNGTC 1 cut(s) 91
AjnI CCWGG 3 cut(s) 439, 454, 702
AjuI GAANNNNNNNTTGG 2 cut(s) 640, 672
AleI CACNNNNGTG 1 cut(s) 790
AluBI AGCT 5 cut(s) 229, 405, 656, 729, 1012
AluI AGCT 5 cut(s) 229, 405, 656, 729, 1012
Alw21I GWGCWC 2 cut(s) 231, 1014
Alw26I GTCTC 2 cut(s) 866, 974
ApeKI GCWGC 4 cut(s) 399, 402, 477, 884
ApoI RAATTY 1 cut(s) 613
Asp700I GAANNNNTTC 1 cut(s) 966
AspA2I CCTAGG 1 cut(s) 100
AspLEI GCGC 3 cut(s) 446, 473, 486
AspS9I GGNCC 8 cut(s) 104, 150, 451, 562, 595, 803, 812, 879
AsuC2I CCSGG 3 cut(s) 153, 494, 661
AsuHPI GGTGA 1 cut(s) 769
AvaII GGWCC 2 cut(s) 451, 595
AvrII CCTAGG 1 cut(s) 100
BanII GRGCYC 2 cut(s) 231, 1014
BbsI GAAGAC 2 cut(s) 184, 252
Bbv12I GWGCWC 2 cut(s) 231, 1014
BbvI GCAGC 4 cut(s) 411, 414, 489, 871
BccI CCATC 1 cut(s) 62
BceAI ACGGC 2 cut(s) 173, 843
BciT130I CCWGG 3 cut(s) 441, 456, 704
BclI TGATCA 1 cut(s) 636
BcnI CCSGG 3 cut(s) 153, 494, 661
BcoDI GTCTC 2 cut(s) 866, 974
BfaI CTAG 1 cut(s) 101
BfoI RGCGCY 1 cut(s) 487
BglI GCCNNNNNGGC 1 cut(s) 162
BisI GCNGC 6 cut(s) 126, 400, 403, 431, 478, 885
BlnI CCTAGG 1 cut(s) 100
BlsI GCNGC 6 cut(s) 127, 401, 404, 432, 479, 886
Bme1390I CCNGG 6 cut(s) 153, 441, 456, 494, 661, 704
Bme18I GGWCC 2 cut(s) 451, 595
BmeRI GACNNNNNGTC 1 cut(s) 91
BmgT120I GGNCC 8 cut(s) 104, 150, 451, 562, 595, 803, 812, 879
BmiI GGNNCC 7 cut(s) 41, 106, 348, 453, 708, 813, 969
BmrFI CCNGG 6 cut(s) 153, 441, 456, 494, 661, 704
BmrI ACTGGG 1 cut(s) 784
BmsI GCATC 1 cut(s) 580
BmuI ACTGGG 1 cut(s) 784
BpiI GAAGAC 2 cut(s) 184, 252
BplI GAGNNNNNCTC 2 cut(s) 291, 323
BpmI CTGGAG 4 cut(s) 155, 318, 358, 990
BpuMI CCSGG 3 cut(s) 153, 494, 661
BsaHI GRCGYC 4 cut(s) 87, 123, 186, 840
BsaI GGTCTC 1 cut(s) 974
BsaJI CCNNGG 8 cut(s) 100, 439, 454, 552, 647, 660, 702, 711
BsaWI WCCGGW 1 cut(s) 322
BsaXI ACNNNNNCTCC 6 cut(s) 125, 155, 194, 224, 988, 1018
Bsc4I CCNNNNNNNGG 8 cut(s) 147, 445, 493, 592, 716, 795, 796, 931
Bse118I RCCGGY 1 cut(s) 876
Bse1I ACTGG 2 cut(s) 790, 888
Bse3DI GCAATG 2 cut(s) 835, 999
BseBI CCWGG 3 cut(s) 441, 456, 704
BseDI CCNNGG 8 cut(s) 100, 439, 454, 552, 647, 660, 702, 711
BseGI GGATG 1 cut(s) 1014
BseLI CCNNNNNNNGG 8 cut(s) 147, 445, 493, 592, 716, 795, 796, 931
BseMI GCAATG 2 cut(s) 835, 999
BseMII CTCAG 3 cut(s) 600, 755, 861
BseNI ACTGG 2 cut(s) 790, 888
BseRI GAGGAG 3 cut(s) 56, 127, 130
BseXI GCAGC 4 cut(s) 411, 414, 489, 871
Bsh1236I CGCG 3 cut(s) 446, 471, 713
BsiHKAI GWGCWC 2 cut(s) 231, 1014
BsiSI CCGG 8 cut(s) 153, 162, 323, 494, 660, 732, 877, 905
BslFI GGGAC 4 cut(s) 337, 437, 610, 876
BslI CCNNNNNNNGG 8 cut(s) 147, 445, 493, 592, 716, 795, 796, 931
BsmAI GTCTC 2 cut(s) 866, 974
BsmBI CGTCTC 1 cut(s) 866
BsmFI GGGAC 4 cut(s) 337, 437, 610, 876
Bso31I GGTCTC 1 cut(s) 974
Bsp1286I GDGCHC 2 cut(s) 231, 1014
Bsp143I GATC 4 cut(s) 3, 636, 684, 774
BspCNI CTCAG 3 cut(s) 601, 754, 862
BspFNI CGCG 3 cut(s) 446, 471, 713
BspLI GGNNCC 7 cut(s) 41, 106, 348, 453, 708, 813, 969
BspTNI GGTCTC 1 cut(s) 974
BsrDI GCAATG 2 cut(s) 835, 999
BsrFI RCCGGY 1 cut(s) 876
BsrI ACTGG 2 cut(s) 790, 888
BssAI RCCGGY 1 cut(s) 876
BssECI CCNNGG 8 cut(s) 100, 439, 454, 552, 647, 660, 702, 711
BssMI GATC 4 cut(s) 3, 636, 684, 774
BssNI GRCGYC 4 cut(s) 87, 123, 186, 840
BssT1I CCWWGG 2 cut(s) 100, 647
Bst2UI CCWGG 3 cut(s) 441, 456, 704
Bst4CI ACNGT 1 cut(s) 351
Bst6I CTCTTC 2 cut(s) 50, 869
BstACI GRCGYC 4 cut(s) 87, 123, 186, 840
BstAPI GCANNNNNTGC 1 cut(s) 408
BstC8I GCNNGC 8 cut(s) 167, 461, 475, 482, 654, 764, 802, 882
BstDEI CTNAG 3 cut(s) 609, 741, 870
BstDSI CCRYGG 1 cut(s) 711
BstF5I GGATG 1 cut(s) 1014
BstFNI CGCG 3 cut(s) 446, 471, 713
BstH2I RGCGCY 1 cut(s) 487
BstHHI GCGC 3 cut(s) 446, 473, 486
BstKTI GATC 4 cut(s) 6, 639, 687, 777
BstMAI GTCTC 2 cut(s) 866, 974
BstMBI GATC 4 cut(s) 3, 636, 684, 774
BstMWI GCNNNNNNNGC 4 cut(s) 162, 408, 477, 483
BstNI CCWGG 3 cut(s) 441, 456, 704
BstNSI RCATGY 1 cut(s) 1054
BstSCI CCNGG 6 cut(s) 151, 439, 454, 492, 659, 702
BstUI CGCG 3 cut(s) 446, 471, 713
BstV1I GCAGC 4 cut(s) 411, 414, 489, 871
BstV2I GAAGAC 2 cut(s) 184, 252
BtgI CCRYGG 1 cut(s) 711
BtsCI GGATG 1 cut(s) 1014
BtsI GCAGTG 1 cut(s) 756
BtsIMutI CAGTG 2 cut(s) 756, 797
Cac8I GCNNGC 8 cut(s) 167, 461, 475, 482, 654, 764, 802, 882
CfoI GCGC 3 cut(s) 446, 473, 486
Cfr10I RCCGGY 1 cut(s) 876
Cfr13I GGNCC 8 cut(s) 104, 150, 451, 562, 595, 803, 812, 879
Cfr42I CCGCGG 1 cut(s) 714
CseI GACGC 5 cut(s) 131, 194, 477, 703, 829
Csp6I GTAC 2 cut(s) 8, 874
CspCI CAANNNNNGTGG 2 cut(s) 817, 852
CviAII CATG 1 cut(s) 1051
CviQI GTAC 2 cut(s) 8, 874
DdeI CTNAG 3 cut(s) 609, 741, 870
DpnI GATC 4 cut(s) 5, 638, 686, 776
DpnII GATC 4 cut(s) 3, 636, 684, 774
DriI GACNNNNNGTC 1 cut(s) 91
EaeI YGGCCR 2 cut(s) 154, 495
Eam1104I CTCTTC 2 cut(s) 50, 869
Eam1105I GACNNNNNGTC 1 cut(s) 91
EarI CTCTTC 2 cut(s) 50, 869
EciI GGCGGA 3 cut(s) 85, 196, 211
Ecl136II GAGCTC 2 cut(s) 229, 1012
Eco130I CCWWGG 2 cut(s) 100, 647
Eco24I GRGCYC 2 cut(s) 231, 1014
Eco31I GGTCTC 1 cut(s) 974
Eco47I GGWCC 2 cut(s) 451, 595
Eco53kI GAGCTC 2 cut(s) 229, 1012
Eco57I CTGAAG 1 cut(s) 551
EcoICRI GAGCTC 2 cut(s) 229, 1012
EcoO109I RGGNCCY 2 cut(s) 104, 562
EcoRII CCWGG 3 cut(s) 439, 454, 702
EcoT14I CCWWGG 2 cut(s) 100, 647
EcoT38I GRGCYC 2 cut(s) 231, 1014
ErhI CCWWGG 2 cut(s) 100, 647
Esp3I CGTCTC 1 cut(s) 866
FaeI CATG 1 cut(s) 1054
FaiI YATR 4 cut(s) 18, 29, 826, 1052
FalI AAGNNNNNCTT 2 cut(s) 640, 672
FaqI GGGAC 4 cut(s) 337, 437, 610, 876
FatI CATG 1 cut(s) 1050
FauI CCCGC 6 cut(s) 29, 115, 497, 718, 889, 950
FbaI TGATCA 1 cut(s) 636
Fnu4HI GCNGC 6 cut(s) 126, 400, 403, 431, 478, 885
FokI GGATG 1 cut(s) 1001
FriOI GRGCYC 2 cut(s) 231, 1014
Fsp4HI GCNGC 6 cut(s) 126, 400, 403, 431, 478, 885
FspBI CTAG 1 cut(s) 101
GlaI GCGC 3 cut(s) 445, 472, 485
GluI GCNGC 6 cut(s) 126, 400, 403, 431, 478, 885
GsuI CTGGAG 4 cut(s) 155, 318, 358, 990
HaeII RGCGCY 1 cut(s) 487
HapII CCGG 8 cut(s) 153, 162, 323, 494, 660, 732, 877, 905
HgaI GACGC 5 cut(s) 131, 194, 477, 703, 829
HhaI GCGC 3 cut(s) 446, 473, 486
Hin1I GRCGYC 4 cut(s) 87, 123, 186, 840
Hin1II CATG 1 cut(s) 1054
Hin6I GCGC 3 cut(s) 444, 471, 484
HinP1I GCGC 3 cut(s) 444, 471, 484
HincII GTYRAC 1 cut(s) 693
HindII GTYRAC 1 cut(s) 693
HindIII AAGCTT 1 cut(s) 654
HinfI GANTC 4 cut(s) 92, 287, 605, 623
HpaII CCGG 8 cut(s) 153, 162, 323, 494, 660, 732, 877, 905
HphI GGTGA 1 cut(s) 769
Hpy166II GTNNAC 2 cut(s) 467, 693
Hpy188I TCNGA 5 cut(s) 214, 240, 591, 604, 610
Hpy188III TCNNGA 6 cut(s) 297, 367, 418, 640, 940, 1007
Hpy8I GTNNAC 2 cut(s) 467, 693
Hpy99I CGWCG 9 cut(s) 26, 62, 86, 89, 92, 125, 188, 236, 419
HpyAV CCTTC 6 cut(s) 139, 301, 343, 575, 586, 925
HpyCH4III ACNGT 1 cut(s) 351
HpyCH4IV ACGT 2 cut(s) 87, 234
HpyCH4V TGCA 4 cut(s) 201, 766, 828, 913
HpyF10VI GCNNNNNNNGC 4 cut(s) 162, 408, 477, 483
HpyF3I CTNAG 3 cut(s) 609, 741, 870
HpySE526I ACGT 2 cut(s) 87, 234
Hsp92I GRCGYC 4 cut(s) 87, 123, 186, 840
Hsp92II CATG 1 cut(s) 1054
HspAI GCGC 3 cut(s) 444, 471, 484
Ksp22I TGATCA 1 cut(s) 636
KspI CCGCGG 1 cut(s) 714
Kzo9I GATC 4 cut(s) 3, 636, 684, 774
LmnI GCTCC 8 cut(s) 39, 174, 416, 588, 664, 712, 734, 746
Lsp1109I GCAGC 4 cut(s) 411, 414, 489, 871
LweI GCATC 1 cut(s) 580
MaeI CTAG 1 cut(s) 101
MaeII ACGT 2 cut(s) 87, 234
MaeIII GTNAC 1 cut(s) 547
MalI GATC 4 cut(s) 5, 638, 686, 776
MboI GATC 4 cut(s) 3, 636, 684, 774
MboII GAAGA 8 cut(s) 37, 184, 257, 433, 682, 685, 694, 856
MfeI CAATTG 1 cut(s) 257
MhlI GDGCHC 2 cut(s) 231, 1014
MluCI AATT 4 cut(s) 257, 519, 613, 919
MlyI GAGTC 2 cut(s) 101, 632
MmeI TCCRAC 1 cut(s) 237
MroXI GAANNNNTTC 1 cut(s) 966
MslI CAYNNNNRTG 1 cut(s) 790
MspA1I CMGCKG 2 cut(s) 713, 884
MspI CCGG 8 cut(s) 153, 162, 323, 494, 660, 732, 877, 905
MspR9I CCNGG 6 cut(s) 153, 441, 456, 494, 661, 704
MunI CAATTG 1 cut(s) 257
MvaI CCWGG 3 cut(s) 441, 456, 704
MvnI CGCG 3 cut(s) 446, 471, 713
MwoI GCNNNNNNNGC 4 cut(s) 162, 408, 477, 483
NciI CCSGG 3 cut(s) 153, 494, 661
NdeII GATC 4 cut(s) 3, 636, 684, 774
NlaIII CATG 1 cut(s) 1054
NlaIV GGNNCC 7 cut(s) 41, 106, 348, 453, 708, 813, 969
NmeAIII GCCGAG 1 cut(s) 250
NspI RCATGY 1 cut(s) 1054
OliI CACNNNNGTG 1 cut(s) 790
PciI ACATGT 1 cut(s) 1050
PcsI WCGNNNNNNNCGW 2 cut(s) 54, 66
PdmI GAANNNNTTC 1 cut(s) 966
PfeI GAWTC 2 cut(s) 287, 605
PflFI GACNNNGTC 2 cut(s) 86, 188
PkrI GCNGC 6 cut(s) 127, 401, 404, 432, 479, 886
PleI GAGTC 2 cut(s) 100, 631
PpsI GAGTC 2 cut(s) 100, 631
PscI ACATGT 1 cut(s) 1050
Psp124BI GAGCTC 2 cut(s) 231, 1014
Psp6I CCWGG 3 cut(s) 439, 454, 702
PspGI CCWGG 3 cut(s) 439, 454, 702
PspN4I GGNNCC 7 cut(s) 41, 106, 348, 453, 708, 813, 969
PspPI GGNCC 8 cut(s) 104, 150, 451, 562, 595, 803, 812, 879
PsyI GACNNNGTC 2 cut(s) 86, 188
RsaI GTAC 2 cut(s) 9, 875
RsaNI GTAC 2 cut(s) 8, 874
RseI CAYNNNNRTG 1 cut(s) 790
SacI GAGCTC 2 cut(s) 231, 1014
SacII CCGCGG 1 cut(s) 714
SatI GCNGC 6 cut(s) 126, 400, 403, 431, 478, 885
Sau3AI GATC 4 cut(s) 3, 636, 684, 774
Sau96I GGNCC 8 cut(s) 104, 150, 451, 562, 595, 803, 812, 879
SchI GAGTC 2 cut(s) 101, 632
ScrFI CCNGG 6 cut(s) 153, 441, 456, 494, 661, 704
SduI GDGCHC 2 cut(s) 231, 1014
SfaNI GCATC 1 cut(s) 580
Sfr303I CCGCGG 1 cut(s) 714
SgrBI CCGCGG 1 cut(s) 714
SinI GGWCC 2 cut(s) 451, 595
SmiMI CAYNNNNRTG 1 cut(s) 790
Sse9I AATT 4 cut(s) 257, 519, 613, 919
SspMI CTAG 1 cut(s) 101
SstI GAGCTC 2 cut(s) 231, 1014
StyD4I CCNGG 6 cut(s) 151, 439, 454, 492, 659, 702
StyI CCWWGG 2 cut(s) 100, 647
TaaI ACNGT 1 cut(s) 351
TaiI ACGT 2 cut(s) 90, 237
TaqI TCGA 9 cut(s) 21, 48, 57, 69, 90, 231, 393, 417, 939
TaqII GACCGA 1 cut(s) 1013
TasI AATT 4 cut(s) 257, 519, 613, 919
TauI GCSGC 2 cut(s) 128, 433
TfiI GAWTC 2 cut(s) 287, 605
TscAI CASTG 2 cut(s) 756, 797
TseI GCWGC 4 cut(s) 399, 402, 477, 884
TspDTI ATGAA 1 cut(s) 325
TspGWI ACGGA 2 cut(s) 376, 403
TspRI CASTG 2 cut(s) 756, 797
Tth111I GACNNNGTC 2 cut(s) 86, 188
VpaK11BI GGWCC 2 cut(s) 451, 595
XapI RAATTY 1 cut(s) 613
XceI RCATGY 1 cut(s) 1054
XmaJI CCTAGG 1 cut(s) 100
XmnI GAANNNNTTC 1 cut(s) 966
XspI CTAG 1 cut(s) 101
ZraI GACGTC 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.