RchiOBHm_Chr1g0363221

Transcriptional activator that specifically binds 5'- GATA-3' or 5'-GAT-3' motifs within gene promoters

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
54675363 .. 54678382
3020 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58799

Sequence Viewer

Length: 1044 bp
ATGATCACACCCAACTTCGTCGACGAGATTGACTGCGGAAGCTTCTTCGATAACATCGACGACCTCATGGAGGACGTCGACTCCGTCCTCGGCCCCGCCCCCGACTGCAACTCCGCCTTCCCTTCCTCCCTCTCCCTCTGGGACGGCCACTCCTCCGCCGCCGCGCCTCTCCCCCCTCCCGACGCCGCCGTCTTCTCCGGCAACGGCGACTCCGACTTCTCCTCCGAGCTCCCGGTTCCGTATGAAGAGATGGTTCATTTGGAATGGCTGTCCAACTTTGTTGAGAATTCCGAGTACTCTGGCGGAAACCTCACCATCAACAAGCAACAGGAGTCTTCCCTGGTCAACAAGGAGTCTTCCCACCAACAGTTCCAGACCTCCAGCCCCATTTCTGTGCTTGACAGCAGCAGCTCCTGCTCGGGCGAGAAGAATGTGCTTGAAGGATCGATTGCTCCTGGCAGGCGGGGACGTGCTAGAAGCAAGCGTCCACGCCCTGCCACCTTCAATCCTCGCTCGGCAATTCAACTGATTTCCCCTGCTTCCTCTGTTTCGGAGATTGACAACCCTCTGCAGCAGCATTCGTTGTTTGCCCCTAAGGTGTTTTCGGACTCTGAGAACTTTGCAGAGTCTCGTCCTGTGGTGAAGATGCCCAAACAAGCTTCCGGGGAGCAGAAGAAGAAGAAGAGAATCAAGTTGCCCCCTCCCCCAAAGGTTCCAGGGGAGCTGAATGAGGATACCCCAGTGCAGGGATCAGTCAGGAAGTGCTTGCATTGTGAGATTACCAAGACACCCCAGTGGAGGGCAGGCCCAATGGGGCCGAAAACCCTTTGCAATGCCTGTGGAGTGCGCTACAAGTCAGGCAGGCTCTTCCCTGAGTACCGTCCTGCAGCTAGTCCAACTTTTGTTCCGGCCTTGCACTCCAATTCCCACAAGAAGGTTATTGAGATGAGAACCAAGGGTGGCGAGATGGCTGCTGTTCCCGATAACAGCATCCCAGAACTCATTCCGAATAACAACAGCAGCATTTCGCTGGATTACATGTGA

Protein Analysis

347

Amino Acids

37.72

Weight (kDa)

5.72

Isoelectric Point (pI)

64.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATA PF00320 255 - 288 2.2e-14 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012520)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 188
AatII GACGTC 1 cut(s) 78
AccI GTMKAC 2 cut(s) 21, 78
AccII CGCG 1 cut(s) 164
AciI CCGC 9 cut(s) 36, 96, 114, 156, 159, 162, 186, 303, 463
AclWI GGATC 2 cut(s) 451, 757
AcoI YGGCCR 1 cut(s) 145
AcsI RAATTY 1 cut(s) 286
AcyI GRCGYC 2 cut(s) 75, 183
AfaI GTAC 2 cut(s) 296, 878
AfiI CCNNNNNNNGG 6 cut(s) 70, 745, 746, 798, 799, 934
AflIII ACRYGT 1 cut(s) 1038
AgsI TTSAA 3 cut(s) 440, 505, 524
AjiI CACGTC 1 cut(s) 470
AjnI CCWGG 3 cut(s) 339, 454, 715
AleI CACNNNNGTG 1 cut(s) 793
AluBI AGCT 6 cut(s) 42, 229, 411, 659, 724, 890
AluI AGCT 6 cut(s) 42, 229, 411, 659, 724, 890
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 1 cut(s) 633
AlwI GGATC 2 cut(s) 451, 757
AlwNI CAGNNNCTG 1 cut(s) 414
Ama87I CYCGRG 1 cut(s) 418
AoxI GGCC 5 cut(s) 91, 145, 805, 815, 909
ApeKI GCWGC 7 cut(s) 405, 408, 571, 574, 887, 971, 1020
ApoI RAATTY 1 cut(s) 286
Asp700I GAANNNNTTC 1 cut(s) 1002
AspLEI GCGC 2 cut(s) 166, 849
AspS9I GGNCC 3 cut(s) 92, 806, 815
AsuC2I CCSGG 2 cut(s) 233, 664
AsuHPI GGTGA 2 cut(s) 304, 652
AvaI CYCGRG 1 cut(s) 418
AxyI CCTNAGG 1 cut(s) 594
BaeI ACNNNNGTAYC 2 cut(s) 726, 759
BanII GRGCYC 1 cut(s) 231
BbsI GAAGAC 3 cut(s) 184, 327, 348
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 7 cut(s) 417, 420, 583, 586, 899, 958, 1032
BccI CCATC 3 cut(s) 244, 323, 961
BceAI ACGGC 3 cut(s) 160, 173, 220
BcgI CGANNNNNNTGC 2 cut(s) 953, 987
BciT130I CCWGG 3 cut(s) 341, 456, 717
BciVI GTATCC 1 cut(s) 727
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 2 cut(s) 233, 664
BcoDI GTCTC 1 cut(s) 633
BfaI CTAG 2 cut(s) 474, 891
BfmI CTRYAG 2 cut(s) 569, 885
BfuI GTATCC 1 cut(s) 727
BmcAI AGTACT 1 cut(s) 296
Bme1390I CCNGG 5 cut(s) 233, 341, 456, 664, 717
BmeT110I CYCGRG 1 cut(s) 418
BmgBI CACGTC 1 cut(s) 470
BmgT120I GGNCC 3 cut(s) 92, 806, 815
BmiI GGNNCC 4 cut(s) 94, 237, 714, 816
BmrFI CCNGG 5 cut(s) 233, 341, 456, 664, 717
BmrI ACTGGG 2 cut(s) 734, 787
BmsI GCATC 2 cut(s) 636, 999
BmuI ACTGGG 2 cut(s) 734, 787
BpiI GAAGAC 3 cut(s) 184, 327, 348
BpmI CTGGAG 1 cut(s) 364
BpuMI CCSGG 2 cut(s) 233, 664
Bsa29I ATCGAT 1 cut(s) 446
BsaHI GRCGYC 2 cut(s) 75, 183
BsaJI CCNNGG 5 cut(s) 88, 339, 663, 716, 954
Bsc4I CCNNNNNNNGG 6 cut(s) 70, 745, 746, 798, 799, 934
Bse1I ACTGG 2 cut(s) 740, 793
Bse21I CCTNAGG 1 cut(s) 594
Bse3DI GCAATG 1 cut(s) 838
BseBI CCWGG 3 cut(s) 341, 456, 717
BseCI ATCGAT 1 cut(s) 446
BseDI CCNNGG 5 cut(s) 88, 339, 663, 716, 954
BseGI GGATG 1 cut(s) 990
BseLI CCNNNNNNNGG 6 cut(s) 70, 745, 746, 798, 799, 934
BseMI GCAATG 1 cut(s) 838
BseMII CTCAG 2 cut(s) 603, 864
BseNI ACTGG 2 cut(s) 740, 793
BseRI GAGGAG 2 cut(s) 142, 211
BseXI GCAGC 7 cut(s) 417, 420, 583, 586, 899, 958, 1032
BsgI GTGCAG 1 cut(s) 764
Bsh1236I CGCG 1 cut(s) 164
BshFI GGCC 5 cut(s) 93, 147, 807, 817, 911
BshVI ATCGAT 1 cut(s) 446
BsiHKAI GWGCWC 1 cut(s) 231
BsiHKCI CYCGRG 1 cut(s) 418
BsiSI CCGG 4 cut(s) 198, 233, 663, 908
BslFI GGGAC 2 cut(s) 155, 480
BslI CCNNNNNNNGG 6 cut(s) 70, 745, 746, 798, 799, 934
BsmAI GTCTC 1 cut(s) 633
BsmFI GGGAC 2 cut(s) 155, 480
BsmI GAATGC 1 cut(s) 577
BsnI GGCC 5 cut(s) 93, 147, 807, 817, 911
BsoBI CYCGRG 1 cut(s) 418
Bsp1286I GDGCHC 1 cut(s) 231
Bsp143I GATC 3 cut(s) 3, 443, 749
BspACI CCGC 9 cut(s) 36, 96, 114, 156, 159, 162, 186, 303, 463
BspANI GGCC 5 cut(s) 93, 147, 807, 817, 911
BspCNI CTCAG 2 cut(s) 604, 865
BspDI ATCGAT 1 cut(s) 446
BspFNI CGCG 1 cut(s) 164
BspLI GGNNCC 4 cut(s) 94, 237, 714, 816
BspMAI CTGCAG 2 cut(s) 573, 889
BspPI GGATC 2 cut(s) 451, 757
BspQI GCTCTTC 1 cut(s) 872
BsrDI GCAATG 1 cut(s) 838
BsrI ACTGG 2 cut(s) 740, 793
BssECI CCNNGG 5 cut(s) 88, 339, 663, 716, 954
BssMI GATC 3 cut(s) 3, 443, 749
BssNI GRCGYC 2 cut(s) 75, 183
BssT1I CCWWGG 1 cut(s) 954
Bst2UI CCWGG 3 cut(s) 341, 456, 717
Bst4CI ACNGT 2 cut(s) 369, 881
Bst6I CTCTTC 3 cut(s) 240, 677, 872
BstACI GRCGYC 2 cut(s) 75, 183
BstAPI GCANNNNNTGC 1 cut(s) 414
BstC8I GCNNGC 5 cut(s) 461, 482, 767, 805, 863
BstDEI CTNAG 3 cut(s) 594, 612, 873
BstENI CCTNNNNNAGG 1 cut(s) 68
BstF5I GGATG 1 cut(s) 990
BstFNI CGCG 1 cut(s) 164
BstHHI GCGC 2 cut(s) 166, 849
BstKTI GATC 3 cut(s) 6, 446, 752
BstMAI GTCTC 1 cut(s) 633
BstMBI GATC 3 cut(s) 3, 443, 749
BstMWI GCNNNNNNNGC 1 cut(s) 414
BstNI CCWGG 3 cut(s) 341, 456, 717
BstNSI RCATGY 1 cut(s) 1042
BstSCI CCNGG 5 cut(s) 231, 339, 454, 662, 715
BstSFI CTRYAG 2 cut(s) 569, 885
BstUI CGCG 1 cut(s) 164
BstV1I GCAGC 7 cut(s) 417, 420, 583, 586, 899, 958, 1032
BstV2I GAAGAC 3 cut(s) 184, 327, 348
Bsu15I ATCGAT 1 cut(s) 446
Bsu36I CCTNAGG 1 cut(s) 594
BsuI GTATCC 1 cut(s) 727
BsuRI GGCC 5 cut(s) 93, 147, 807, 817, 911
BsuTUI ATCGAT 1 cut(s) 446
BtrI CACGTC 1 cut(s) 470
BtsCI GGATG 1 cut(s) 990
BtsIMutI CAGTG 2 cut(s) 747, 800
Cac8I GCNNGC 5 cut(s) 461, 482, 767, 805, 863
CaiI CAGNNNCTG 1 cut(s) 414
CfoI GCGC 2 cut(s) 166, 849
Cfr13I GGNCC 3 cut(s) 92, 806, 815
ClaI ATCGAT 1 cut(s) 446
CseI GACGC 2 cut(s) 191, 473
Csp6I GTAC 2 cut(s) 295, 877
CspCI CAANNNNNGTGG 2 cut(s) 820, 855
CviAII CATG 2 cut(s) 67, 1039
CviQI GTAC 2 cut(s) 295, 877
DdeI CTNAG 3 cut(s) 594, 612, 873
DpnI GATC 3 cut(s) 5, 445, 751
DpnII GATC 3 cut(s) 3, 443, 749
DrdI GACNNNNNNGTC 1 cut(s) 188
DseDI GACNNNNNNGTC 1 cut(s) 188
EaeI YGGCCR 1 cut(s) 145
Eam1104I CTCTTC 3 cut(s) 240, 677, 872
EarI CTCTTC 3 cut(s) 240, 677, 872
EciI GGCGGA 3 cut(s) 103, 145, 318
Ecl136II GAGCTC 1 cut(s) 229
Eco130I CCWWGG 1 cut(s) 954
Eco24I GRGCYC 1 cut(s) 231
Eco53kI GAGCTC 1 cut(s) 229
Eco81I CCTNAGG 1 cut(s) 594
Eco88I CYCGRG 1 cut(s) 418
EcoICRI GAGCTC 1 cut(s) 229
EcoNI CCTNNNNNAGG 1 cut(s) 68
EcoRI GAATTC 1 cut(s) 286
EcoRII CCWGG 3 cut(s) 339, 454, 715
EcoT14I CCWWGG 1 cut(s) 954
EcoT38I GRGCYC 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 954
FaeI CATG 2 cut(s) 70, 1042
FaiI YATR 3 cut(s) 68, 243, 1040
FaqI GGGAC 2 cut(s) 155, 480
FatI CATG 2 cut(s) 66, 1038
FauI CCCGC 2 cut(s) 103, 456
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 2 cut(s) 21, 78
FokI GGATG 1 cut(s) 977
FriOI GRGCYC 1 cut(s) 231
FspBI CTAG 2 cut(s) 474, 891
GlaI GCGC 2 cut(s) 165, 848
GsuI CTGGAG 1 cut(s) 364
HaeIII GGCC 5 cut(s) 93, 147, 807, 817, 911
HapII CCGG 4 cut(s) 198, 233, 663, 908
HgaI GACGC 2 cut(s) 191, 473
HhaI GCGC 2 cut(s) 166, 849
Hin1I GRCGYC 2 cut(s) 75, 183
Hin1II CATG 2 cut(s) 70, 1042
Hin6I GCGC 2 cut(s) 164, 847
HinP1I GCGC 2 cut(s) 164, 847
HincII GTYRAC 3 cut(s) 22, 79, 346
HindII GTYRAC 3 cut(s) 22, 79, 346
HindIII AAGCTT 2 cut(s) 40, 657
HinfI GANTC 7 cut(s) 80, 209, 332, 353, 608, 626, 687
HpaII CCGG 4 cut(s) 198, 233, 663, 908
HphI GGTGA 2 cut(s) 304, 652
Hpy166II GTNNAC 4 cut(s) 22, 79, 346, 488
Hpy188I TCNGA 7 cut(s) 214, 226, 292, 553, 607, 613, 1008
Hpy188III TCNNGA 4 cut(s) 179, 373, 757, 980
Hpy8I GTNNAC 4 cut(s) 22, 79, 346, 488
Hpy99I CGWCG 5 cut(s) 23, 26, 62, 80, 185
HpyAV CCTTC 5 cut(s) 127, 132, 434, 511, 928
HpyCH4III ACNGT 2 cut(s) 369, 881
HpyCH4IV ACGT 2 cut(s) 75, 469
HpyCH4V TGCA 8 cut(s) 108, 571, 623, 745, 769, 831, 887, 916
HpyF10VI GCNNNNNNNGC 1 cut(s) 414
HpyF3I CTNAG 3 cut(s) 594, 612, 873
HpySE526I ACGT 2 cut(s) 75, 469
Hsp92I GRCGYC 2 cut(s) 75, 183
Hsp92II CATG 2 cut(s) 70, 1042
HspAI GCGC 2 cut(s) 164, 847
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 443, 749
LguI GCTCTTC 1 cut(s) 872
LmnI GCTCC 5 cut(s) 234, 416, 457, 667, 721
Lsp1109I GCAGC 7 cut(s) 417, 420, 583, 586, 899, 958, 1032
LweI GCATC 2 cut(s) 636, 999
MaeI CTAG 2 cut(s) 474, 891
MaeII ACGT 2 cut(s) 75, 469
MalI GATC 3 cut(s) 5, 445, 751
MboI GATC 3 cut(s) 3, 443, 749
MhlI GDGCHC 1 cut(s) 231
MluCI AATT 3 cut(s) 286, 519, 922
MlyI GAGTC 6 cut(s) 74, 203, 341, 362, 602, 635
MmeI TCCRAC 3 cut(s) 237, 297, 920
MroXI GAANNNNTTC 1 cut(s) 1002
MslI CAYNNNNRTG 2 cut(s) 392, 793
MspI CCGG 4 cut(s) 198, 233, 663, 908
MspR9I CCNGG 5 cut(s) 233, 341, 456, 664, 717
Mva1269I GAATGC 1 cut(s) 577
MvaI CCWGG 3 cut(s) 341, 456, 717
MvnI CGCG 1 cut(s) 164
MwoI GCNNNNNNNGC 1 cut(s) 414
NciI CCSGG 2 cut(s) 233, 664
NdeII GATC 3 cut(s) 3, 443, 749
NlaIII CATG 2 cut(s) 70, 1042
NlaIV GGNNCC 4 cut(s) 94, 237, 714, 816
NmeAIII GCCGAG 2 cut(s) 69, 494
NspI RCATGY 1 cut(s) 1042
OliI CACNNNNGTG 1 cut(s) 793
PciI ACATGT 1 cut(s) 1038
PciSI GCTCTTC 1 cut(s) 872
PcsI WCGNNNNNNNCGW 3 cut(s) 54, 81, 210
PctI GAATGC 1 cut(s) 577
PdmI GAANNNNTTC 1 cut(s) 1002
PfeI GAWTC 1 cut(s) 687
PflFI GACNNNGTC 1 cut(s) 83
PleI GAGTC 6 cut(s) 74, 203, 340, 361, 602, 634
PpsI GAGTC 6 cut(s) 74, 203, 340, 361, 602, 634
PscI ACATGT 1 cut(s) 1038
Psp124BI GAGCTC 1 cut(s) 231
Psp6I CCWGG 3 cut(s) 339, 454, 715
PspGI CCWGG 3 cut(s) 339, 454, 715
PspN4I GGNNCC 4 cut(s) 94, 237, 714, 816
PspPI GGNCC 3 cut(s) 92, 806, 815
PstI CTGCAG 2 cut(s) 573, 889
PstNI CAGNNNCTG 1 cut(s) 414
PsyI GACNNNGTC 1 cut(s) 83
RsaI GTAC 2 cut(s) 296, 878
RsaNI GTAC 2 cut(s) 295, 877
RseI CAYNNNNRTG 2 cut(s) 392, 793
SacI GAGCTC 1 cut(s) 231
SalI GTCGAC 2 cut(s) 20, 77
SapI GCTCTTC 1 cut(s) 872
Sau3AI GATC 3 cut(s) 3, 443, 749
Sau96I GGNCC 3 cut(s) 92, 806, 815
ScaI AGTACT 1 cut(s) 296
SchI GAGTC 6 cut(s) 74, 203, 341, 362, 602, 635
ScrFI CCNGG 5 cut(s) 233, 341, 456, 664, 717
SduI GDGCHC 1 cut(s) 231
SfaNI GCATC 2 cut(s) 636, 999
SfcI CTRYAG 2 cut(s) 569, 885
SgrDI CGTCGACG 1 cut(s) 20
SmiMI CAYNNNNRTG 2 cut(s) 392, 793
Sse9I AATT 3 cut(s) 286, 519, 922
SsiI CCGC 9 cut(s) 36, 96, 114, 156, 159, 162, 186, 303, 463
SspMI CTAG 2 cut(s) 474, 891
SstI GAGCTC 1 cut(s) 231
StyD4I CCNGG 5 cut(s) 231, 339, 454, 662, 715
StyI CCWWGG 1 cut(s) 954
TaaI ACNGT 2 cut(s) 369, 881
TaiI ACGT 2 cut(s) 78, 472
TaqI TCGA 5 cut(s) 21, 48, 57, 78, 446
TasI AATT 3 cut(s) 286, 519, 922
TatI WGTACW 1 cut(s) 294
TauI GCSGC 3 cut(s) 161, 164, 188
TfiI GAWTC 1 cut(s) 687
TscAI CASTG 2 cut(s) 747, 800
TseI GCWGC 7 cut(s) 405, 408, 571, 574, 887, 971, 1020
TspDTI ATGAA 2 cut(s) 245, 258
TspGWI ACGGA 2 cut(s) 73, 228
TspRI CASTG 2 cut(s) 747, 800
Tth111I GACNNNGTC 1 cut(s) 83
XagI CCTNNNNNAGG 1 cut(s) 68
XapI RAATTY 1 cut(s) 286
XceI RCATGY 1 cut(s) 1042
XmiI GTMKAC 2 cut(s) 21, 78
XmnI GAANNNNTTC 1 cut(s) 1002
XspI CTAG 2 cut(s) 474, 891
ZraI GACGTC 1 cut(s) 76
ZrmI AGTACT 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.