pycom01g13490

Transcriptional activator that specifically binds 5'- GATA-3' or 5'-GAT-3' motifs within gene promoters

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
13941784 .. 13943377
1594 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g13490.2

Sequence Viewer

Length: 1056 bp
ATGATCGGACCGAACTATATCGACGATATAGACTGCGGGAGCCTCTTCGACACCATCGACGACCTCCTCGATTTCCCAACCGACGACGTCGAGTCGGTCCTCGGCCCCGCCCCCGACTGTAACGCCGCCTTCAACTCCTCCTCCCTCTGGCCCAGCCATTCCGGCTCGCTCCAGCCTCCCAACGACGCCGTCTTCTCCTGCAACTCCGCCTCCGACCTCTCCGCCGAGCTCGACGTTCCGATTGAAGACATTGTTCAATTGGAATGGCTGTCAAACTTTTGTGAGGATTCCTTCTCTGGAGGAAGCCTCACAATCAACAAACCGGACAGCTCCTTCATCAACAAGGAATCGTCCCACCAGCAGTTCCAGACCTCCAGCCCGATTTCTGTCCTCGACAGCAGCAGCTCTTGCTCCGTCGAGAAGAATGTGCCGCAAAGCCCGGGCGCAGTGGTCCCTGGCAAGCGCGGACGCGCTCGCAGCAAGCGCCCCCGCCCGGCCACATTCAACCCTCGCTCCGCAATTCAACTCATTTCCCCTGCTTCCTCTGTTACCGAGGCAGAGGCCCTTCAGCATCAGCCGTTGCTCCCTCCCAAGGTCCATTCGGATTCTGAGAATTTCGCAGAGTCCCGTCCTGTGATCAAGATACCAAAGCAAGCTTCCGGGGAGCAGAAGAAGAAAAAGAAGATCAAGTTGACGCTTCCCCAGGCTCCCGCGGAGGGAAATCAAAGTTCCGGCACTACTCAGGGAGCAGTGAGGAAATGCTTGCATTGTGAGATTACCAAGACACCCCAGTGGAGGGCAGGCCCAATGGGGCCGAAAACCCTATGCAATGCCTGTGGCGTCCGCTACAAGTCAGGCCGTCTCTTCCCTGAGTACCGGCCCGCTGCCAGTCCCACCTTTGTTCCGGCCTTGCACTCCAATTCCCACAAGAAGGTTATCGAGATGAGAAACAAAGGCGGCGAACTGATTCCCTTTGGAGAGACCACAACAGCAATGACCGAAACTCCAGAGCTGATCCCCAATACTAACCACAGCATTTCGCTGGATTACATGTGA

Protein Analysis

352

Amino Acids

37.92

Weight (kDa)

5.94

Isoelectric Point (pI)

58.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012520)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 90
AccII CGCG 3 cut(s) 465, 471, 713
AclWI GGATC 1 cut(s) 1009
AcoI YGGCCR 1 cut(s) 495
AcsI RAATTY 1 cut(s) 613
AcuI CTGAAG 1 cut(s) 551
AcyI GRCGYC 3 cut(s) 87, 186, 840
AfaI GTAC 1 cut(s) 875
AfiI CCNNNNNNNGG 7 cut(s) 147, 493, 592, 716, 795, 796, 931
AflIII ACRYGT 1 cut(s) 1050
AgsI TTSAA 5 cut(s) 133, 245, 257, 505, 524
AhdI GACNNNNNGTC 1 cut(s) 91
AjnI CCWGG 2 cut(s) 454, 702
AjuI GAANNNNNNNTTGG 2 cut(s) 640, 672
AleI CACNNNNGTG 1 cut(s) 790
AluBI AGCT 5 cut(s) 229, 330, 405, 656, 1012
AluI AGCT 5 cut(s) 229, 330, 405, 656, 1012
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 2 cut(s) 866, 974
AlwI GGATC 1 cut(s) 1009
Ama87I CYCGRG 1 cut(s) 439
AoxI GGCC 9 cut(s) 103, 149, 495, 561, 802, 812, 856, 878, 906
ApeKI GCWGC 4 cut(s) 399, 402, 477, 884
ApoI RAATTY 1 cut(s) 613
Asp700I GAANNNNTTC 1 cut(s) 966
AspLEI GCGC 4 cut(s) 446, 465, 473, 486
AsuC2I CCSGG 4 cut(s) 440, 441, 494, 661
AvaI CYCGRG 1 cut(s) 439
AvaII GGWCC 4 cut(s) 8, 97, 451, 595
BanII GRGCYC 1 cut(s) 231
BbsI GAAGAC 2 cut(s) 184, 252
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 4 cut(s) 411, 414, 489, 871
BccI CCATC 1 cut(s) 62
BceAI ACGGC 3 cut(s) 173, 562, 843
BciT130I CCWGG 2 cut(s) 456, 704
BclI TGATCA 1 cut(s) 636
BcnI CCSGG 4 cut(s) 440, 441, 494, 661
BcoDI GTCTC 2 cut(s) 866, 974
BfoI RGCGCY 1 cut(s) 487
BglI GCCNNNNNGGC 1 cut(s) 162
BisI GCNGC 7 cut(s) 126, 400, 403, 431, 478, 885, 958
BlsI GCNGC 7 cut(s) 127, 401, 404, 432, 479, 886, 959
Bme1390I CCNGG 6 cut(s) 440, 441, 456, 494, 661, 704
Bme18I GGWCC 4 cut(s) 8, 97, 451, 595
BmeRI GACNNNNNGTC 1 cut(s) 91
BmeT110I CYCGRG 1 cut(s) 439
BmiI GGNNCC 5 cut(s) 41, 106, 453, 708, 813
BmrFI CCNGG 6 cut(s) 440, 441, 456, 494, 661, 704
BmrI ACTGGG 1 cut(s) 784
BmsI GCATC 1 cut(s) 580
BmuI ACTGGG 1 cut(s) 784
BpiI GAAGAC 2 cut(s) 184, 252
BplI GAGNNNNNCTC 2 cut(s) 291, 323
BpmI CTGGAG 4 cut(s) 155, 318, 358, 990
BpuMI CCSGG 4 cut(s) 440, 441, 494, 661
BsaHI GRCGYC 3 cut(s) 87, 186, 840
BsaI GGTCTC 1 cut(s) 974
BsaJI CCNNGG 8 cut(s) 100, 439, 454, 552, 591, 660, 702, 711
BsaWI WCCGGW 1 cut(s) 322
BsaXI ACNNNNNCTCC 8 cut(s) 125, 155, 194, 224, 497, 527, 988, 1018
Bsc4I CCNNNNNNNGG 7 cut(s) 147, 493, 592, 716, 795, 796, 931
Bse118I RCCGGY 1 cut(s) 876
Bse1I ACTGG 2 cut(s) 790, 888
Bse3DI GCAATG 2 cut(s) 835, 999
BseBI CCWGG 2 cut(s) 456, 704
BseDI CCNNGG 8 cut(s) 100, 439, 454, 552, 591, 660, 702, 711
BseLI CCNNNNNNNGG 7 cut(s) 147, 493, 592, 716, 795, 796, 931
BseMI GCAATG 2 cut(s) 835, 999
BseMII CTCAG 3 cut(s) 600, 755, 861
BseNI ACTGG 2 cut(s) 790, 888
BseRI GAGGAG 3 cut(s) 56, 127, 130
BseXI GCAGC 4 cut(s) 411, 414, 489, 871
BseYI CCCAGC 1 cut(s) 152
Bsh1236I CGCG 3 cut(s) 465, 471, 713
BshFI GGCC 9 cut(s) 105, 151, 497, 563, 804, 814, 858, 880, 908
BsiHKAI GWGCWC 1 cut(s) 231
BsiHKCI CYCGRG 1 cut(s) 439
BsiSI CCGG 8 cut(s) 162, 323, 440, 494, 660, 732, 877, 905
BslFI GGGAC 4 cut(s) 337, 437, 610, 876
BslI CCNNNNNNNGG 7 cut(s) 147, 493, 592, 716, 795, 796, 931
BsmAI GTCTC 2 cut(s) 866, 974
BsmBI CGTCTC 1 cut(s) 866
BsmFI GGGAC 4 cut(s) 337, 437, 610, 876
BsnI GGCC 9 cut(s) 105, 151, 497, 563, 804, 814, 858, 880, 908
Bso31I GGTCTC 1 cut(s) 974
BsoBI CYCGRG 1 cut(s) 439
Bsp1286I GDGCHC 1 cut(s) 231
Bsp143I GATC 4 cut(s) 3, 636, 684, 1014
BspANI GGCC 9 cut(s) 105, 151, 497, 563, 804, 814, 858, 880, 908
BspCNI CTCAG 3 cut(s) 601, 754, 862
BspFNI CGCG 3 cut(s) 465, 471, 713
BspLI GGNNCC 5 cut(s) 41, 106, 453, 708, 813
BspPI GGATC 1 cut(s) 1009
BspTNI GGTCTC 1 cut(s) 974
BsrDI GCAATG 2 cut(s) 835, 999
BsrFI RCCGGY 1 cut(s) 876
BsrI ACTGG 2 cut(s) 790, 888
BssAI RCCGGY 1 cut(s) 876
BssECI CCNNGG 8 cut(s) 100, 439, 454, 552, 591, 660, 702, 711
BssMI GATC 4 cut(s) 3, 636, 684, 1014
BssNI GRCGYC 3 cut(s) 87, 186, 840
BssT1I CCWWGG 1 cut(s) 591
Bst2UI CCWGG 2 cut(s) 456, 704
Bst4CI ACNGT 1 cut(s) 119
Bst6I CTCTTC 2 cut(s) 50, 869
BstACI GRCGYC 3 cut(s) 87, 186, 840
BstAPI GCANNNNNTGC 1 cut(s) 408
BstC8I GCNNGC 8 cut(s) 167, 461, 475, 482, 654, 764, 802, 882
BstDEI CTNAG 3 cut(s) 609, 741, 870
BstDSI CCRYGG 1 cut(s) 711
BstFNI CGCG 3 cut(s) 465, 471, 713
BstH2I RGCGCY 1 cut(s) 487
BstHHI GCGC 4 cut(s) 446, 465, 473, 486
BstKTI GATC 4 cut(s) 6, 639, 687, 1017
BstMAI GTCTC 2 cut(s) 866, 974
BstMBI GATC 4 cut(s) 3, 636, 684, 1014
BstMWI GCNNNNNNNGC 4 cut(s) 162, 408, 477, 483
BstNI CCWGG 2 cut(s) 456, 704
BstNSI RCATGY 1 cut(s) 1054
BstSCI CCNGG 6 cut(s) 438, 439, 454, 492, 659, 702
BstUI CGCG 3 cut(s) 465, 471, 713
BstV1I GCAGC 4 cut(s) 411, 414, 489, 871
BstV2I GAAGAC 2 cut(s) 184, 252
BsuRI GGCC 9 cut(s) 105, 151, 497, 563, 804, 814, 858, 880, 908
BtgI CCRYGG 1 cut(s) 711
BtsI GCAGTG 2 cut(s) 453, 756
BtsIMutI CAGTG 3 cut(s) 453, 756, 797
Cac8I GCNNGC 8 cut(s) 167, 461, 475, 482, 654, 764, 802, 882
CfoI GCGC 4 cut(s) 446, 465, 473, 486
Cfr10I RCCGGY 1 cut(s) 876
Cfr42I CCGCGG 1 cut(s) 714
Cfr9I CCCGGG 1 cut(s) 439
CpoI CGGWCCG 1 cut(s) 8
CseI GACGC 4 cut(s) 194, 477, 703, 829
Csp6I GTAC 1 cut(s) 874
CspCI CAANNNNNGTGG 2 cut(s) 817, 852
CspI CGGWCCG 1 cut(s) 8
CviAII CATG 1 cut(s) 1051
CviQI GTAC 1 cut(s) 874
DdeI CTNAG 3 cut(s) 609, 741, 870
DpnI GATC 4 cut(s) 5, 638, 686, 1016
DpnII GATC 4 cut(s) 3, 636, 684, 1014
DriI GACNNNNNGTC 1 cut(s) 91
EaeI YGGCCR 1 cut(s) 495
Eam1104I CTCTTC 2 cut(s) 50, 869
Eam1105I GACNNNNNGTC 1 cut(s) 91
EarI CTCTTC 2 cut(s) 50, 869
EciI GGCGGA 2 cut(s) 196, 211
Ecl136II GAGCTC 1 cut(s) 229
Eco130I CCWWGG 1 cut(s) 591
Eco24I GRGCYC 1 cut(s) 231
Eco31I GGTCTC 1 cut(s) 974
Eco47I GGWCC 4 cut(s) 8, 97, 451, 595
Eco53kI GAGCTC 1 cut(s) 229
Eco57I CTGAAG 1 cut(s) 551
Eco88I CYCGRG 1 cut(s) 439
EcoICRI GAGCTC 1 cut(s) 229
EcoO109I RGGNCCY 1 cut(s) 562
EcoRII CCWGG 2 cut(s) 454, 702
EcoT14I CCWWGG 1 cut(s) 591
EcoT38I GRGCYC 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 591
Esp3I CGTCTC 1 cut(s) 866
FaeI CATG 1 cut(s) 1054
FaiI YATR 4 cut(s) 18, 29, 826, 1052
FaqI GGGAC 4 cut(s) 337, 437, 610, 876
FatI CATG 1 cut(s) 1050
FauI CCCGC 5 cut(s) 29, 115, 497, 718, 889
FbaI TGATCA 1 cut(s) 636
Fnu4HI GCNGC 7 cut(s) 126, 400, 403, 431, 478, 885, 958
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 7 cut(s) 126, 400, 403, 431, 478, 885, 958
GlaI GCGC 4 cut(s) 445, 464, 472, 485
GluI GCNGC 7 cut(s) 126, 400, 403, 431, 478, 885, 958
GsaI CCCAGC 1 cut(s) 156
GsuI CTGGAG 4 cut(s) 155, 318, 358, 990
HaeII RGCGCY 1 cut(s) 487
HaeIII GGCC 9 cut(s) 105, 151, 497, 563, 804, 814, 858, 880, 908
HapII CCGG 8 cut(s) 162, 323, 440, 494, 660, 732, 877, 905
HgaI GACGC 4 cut(s) 194, 477, 703, 829
HhaI GCGC 4 cut(s) 446, 465, 473, 486
Hin1I GRCGYC 3 cut(s) 87, 186, 840
Hin1II CATG 1 cut(s) 1054
Hin6I GCGC 4 cut(s) 444, 463, 471, 484
HinP1I GCGC 4 cut(s) 444, 463, 471, 484
HincII GTYRAC 1 cut(s) 693
HindII GTYRAC 1 cut(s) 693
HindIII AAGCTT 1 cut(s) 654
HinfI GANTC 6 cut(s) 92, 287, 347, 605, 623, 967
HpaII CCGG 8 cut(s) 162, 323, 440, 494, 660, 732, 877, 905
Hpy166II GTNNAC 1 cut(s) 693
Hpy188I TCNGA 5 cut(s) 8, 214, 240, 604, 610
Hpy188III TCNNGA 6 cut(s) 297, 367, 418, 640, 940, 1007
Hpy8I GTNNAC 1 cut(s) 693
Hpy99I CGWCG 8 cut(s) 26, 62, 86, 89, 92, 188, 236, 419
HpyAV CCTTC 5 cut(s) 139, 301, 343, 575, 925
HpyCH4III ACNGT 1 cut(s) 119
HpyCH4IV ACGT 2 cut(s) 87, 234
HpyCH4V TGCA 4 cut(s) 201, 766, 828, 913
HpyF10VI GCNNNNNNNGC 4 cut(s) 162, 408, 477, 483
HpyF3I CTNAG 3 cut(s) 609, 741, 870
HpySE526I ACGT 2 cut(s) 87, 234
Hsp92I GRCGYC 3 cut(s) 87, 186, 840
Hsp92II CATG 1 cut(s) 1054
HspAI GCGC 4 cut(s) 444, 463, 471, 484
Ksp22I TGATCA 1 cut(s) 636
KspI CCGCGG 1 cut(s) 714
Kzo9I GATC 4 cut(s) 3, 636, 684, 1014
LmnI GCTCC 9 cut(s) 39, 174, 335, 416, 518, 588, 664, 712, 746
Lsp1109I GCAGC 4 cut(s) 411, 414, 489, 871
LweI GCATC 1 cut(s) 580
MaeII ACGT 2 cut(s) 87, 234
MaeIII GTNAC 2 cut(s) 119, 547
MalI GATC 4 cut(s) 5, 638, 686, 1016
MboI GATC 4 cut(s) 3, 636, 684, 1014
MboII GAAGA 8 cut(s) 37, 184, 257, 433, 682, 685, 694, 856
MfeI CAATTG 1 cut(s) 257
MhlI GDGCHC 1 cut(s) 231
MluCI AATT 4 cut(s) 257, 519, 613, 919
MlyI GAGTC 2 cut(s) 101, 632
MmeI TCCRAC 1 cut(s) 237
MroXI GAANNNNTTC 1 cut(s) 966
MslI CAYNNNNRTG 1 cut(s) 790
MspA1I CMGCKG 2 cut(s) 713, 884
MspI CCGG 8 cut(s) 162, 323, 440, 494, 660, 732, 877, 905
MspR9I CCNGG 6 cut(s) 440, 441, 456, 494, 661, 704
MunI CAATTG 1 cut(s) 257
MvaI CCWGG 2 cut(s) 456, 704
MvnI CGCG 3 cut(s) 465, 471, 713
MwoI GCNNNNNNNGC 4 cut(s) 162, 408, 477, 483
NciI CCSGG 4 cut(s) 440, 441, 494, 661
NdeII GATC 4 cut(s) 3, 636, 684, 1014
NlaIII CATG 1 cut(s) 1054
NlaIV GGNNCC 5 cut(s) 41, 106, 453, 708, 813
NmeAIII GCCGAG 2 cut(s) 81, 250
NspI RCATGY 1 cut(s) 1054
OliI CACNNNNGTG 1 cut(s) 790
PciI ACATGT 1 cut(s) 1050
PcsI WCGNNNNNNNCGW 2 cut(s) 54, 66
PdmI GAANNNNTTC 1 cut(s) 966
PfeI GAWTC 4 cut(s) 287, 347, 605, 967
PflFI GACNNNGTC 2 cut(s) 86, 188
PkrI GCNGC 7 cut(s) 127, 401, 404, 432, 479, 886, 959
PleI GAGTC 2 cut(s) 100, 631
PpsI GAGTC 2 cut(s) 100, 631
PscI ACATGT 1 cut(s) 1050
Psp124BI GAGCTC 1 cut(s) 231
Psp6I CCWGG 2 cut(s) 454, 702
PspFI CCCAGC 1 cut(s) 152
PspGI CCWGG 2 cut(s) 454, 702
PspN4I GGNNCC 5 cut(s) 41, 106, 453, 708, 813
PsyI GACNNNGTC 2 cut(s) 86, 188
RsaI GTAC 1 cut(s) 875
RsaNI GTAC 1 cut(s) 874
RseI CAYNNNNRTG 1 cut(s) 790
Rsr2I CGGWCCG 1 cut(s) 8
RsrII CGGWCCG 1 cut(s) 8
SacI GAGCTC 1 cut(s) 231
SacII CCGCGG 1 cut(s) 714
SatI GCNGC 7 cut(s) 126, 400, 403, 431, 478, 885, 958
Sau3AI GATC 4 cut(s) 3, 636, 684, 1014
SchI GAGTC 2 cut(s) 101, 632
ScrFI CCNGG 6 cut(s) 440, 441, 456, 494, 661, 704
SduI GDGCHC 1 cut(s) 231
SfaNI GCATC 1 cut(s) 580
Sfr303I CCGCGG 1 cut(s) 714
SgrBI CCGCGG 1 cut(s) 714
SinI GGWCC 4 cut(s) 8, 97, 451, 595
SmaI CCCGGG 1 cut(s) 441
SmiMI CAYNNNNRTG 1 cut(s) 790
SrfI GCCCGGGC 1 cut(s) 441
Sse9I AATT 4 cut(s) 257, 519, 613, 919
SstI GAGCTC 1 cut(s) 231
StyD4I CCNGG 6 cut(s) 438, 439, 454, 492, 659, 702
StyI CCWWGG 1 cut(s) 591
TaaI ACNGT 1 cut(s) 119
TaiI ACGT 2 cut(s) 90, 237
TaqI TCGA 9 cut(s) 21, 48, 57, 69, 90, 231, 393, 417, 939
TaqII GACCGA 3 cut(s) 25, 85, 1013
TasI AATT 4 cut(s) 257, 519, 613, 919
TauI GCSGC 3 cut(s) 128, 433, 960
TfiI GAWTC 4 cut(s) 287, 347, 605, 967
TscAI CASTG 3 cut(s) 453, 756, 797
TseI GCWGC 4 cut(s) 399, 402, 477, 884
TspDTI ATGAA 1 cut(s) 325
TspGWI ACGGA 1 cut(s) 403
TspMI CCCGGG 1 cut(s) 439
TspRI CASTG 3 cut(s) 453, 756, 797
Tth111I GACNNNGTC 2 cut(s) 86, 188
VpaK11BI GGWCC 4 cut(s) 8, 97, 451, 595
XapI RAATTY 1 cut(s) 613
XceI RCATGY 1 cut(s) 1054
XmaI CCCGGG 1 cut(s) 439
XmnI GAANNNNTTC 1 cut(s) 966
ZraI GACGTC 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.