pycom07g16830

Transcriptional activator that specifically binds 5'- GATA-3' or 5'-GAT-3' motifs within gene promoters

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
19319868 .. 19321673
1806 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g16830.1

Sequence Viewer

Length: 1056 bp
ATGATGGGACCGAGCTTTATCGACGATATAGACTGCGGGAGCCTGTTCGACACCATCGACGACCTCCTCAATTTCCCAACCGACGACGTGGAGTCTGCCCTCGGCCCCGCCCCCGACTGCGACGCCGCTCTCAACTCCTCCTCCCCCTGGCCCAGCCAGTCCGGCTCCCTCCAGCCACCCAATGAAGCCGTCTTCTCCGGCAACTCAGCCTCAGACCTCTCCGCCGAGCTCGACGTTCCGATTGAAGACATTGTTCAATTGGAATGGCTGTCAAACTTCTGTGAGGATTCCTTCTCTGGAGGAAGCCTAACGATCAACAAACCGGACAAACCCTTCGTCAACAACGAATCATCCCACCAGCAGTTCCAGACCTCCAGCCCCATTTCCGTCCTCGACAGCAGCAGCTCCTGCTCCGTCGAGAAGAATGTGCCGCAAAGCCCTGGCCAGGTGGTTCCTGGCAAGCGCGGACGCGCTCGCAGCAAGCGTCCCCGCCCAGCTACATTCAACCCTCGTCCCGCAATTCAACTCATTTCCCCTGCCTCCTCTGTTACTGAAGCCGAGGCCCTTCAGCATCAGCCTTTGCTCCCTCTTAAGGTCCATTCGGATTCTGAGAATTTCGCAGAGTCCCGTCCTGTGATCAAGATACCGAAGCAAGCTTCCGGGGAGCAGAAGAAGAAAAAGAAGATCAAGTTGACACTTCCCCAGGCTCCGGCAGAGGGAAATCAAAGTTCCGGCACCACTCAGGGAGCAGTGAGAAAGTGCTTGCATTGTGAGATTACTAAGACACCCCAGTGGAGGGCAGGTCCAATGGGGCCAAAAACTCTTTGCAATGCCTGTGGTGTCCGCTACAAGTCAGGCCGGCTCTTCCCTGAGTACCGGCCTGCTGCCAGCCCTACCTTTGTCCCAGCCTTGCACTCCAATTCCCACAAGAAGGTTCTCGAGATGAGAAACAAAGGCGGCGAGCTGGTCCCTTTTGGAGAGACCACAACAGCAATGACCGAAACTCCAGAGCTCATCCCCAATGCTAACCACAGCATTTCGCTGGATTACATGTGA

Protein Analysis

352

Amino Acids

37.83

Weight (kDa)

5.86

Isoelectric Point (pI)

58.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATA PF00320 254 - 287 2.2e-14 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012520)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 791
AccB1I GGYRCC 1 cut(s) 734
AccBSI CCGCTC 1 cut(s) 128
AccII CGCG 2 cut(s) 465, 471
AcoI YGGCCR 1 cut(s) 442
AcsI RAATTY 1 cut(s) 613
AcuI CTGAAG 2 cut(s) 551, 573
AcyI GRCGYC 1 cut(s) 123
AfaI GTAC 1 cut(s) 875
AfiI CCNNNNNNNGG 8 cut(s) 147, 445, 592, 709, 716, 795, 796, 931
AflII CTTAAG 1 cut(s) 590
AflIII ACRYGT 1 cut(s) 1050
AgsI TTSAA 4 cut(s) 245, 257, 505, 524
AhdI GACNNNNNGTC 1 cut(s) 91
AjiI CACGTC 1 cut(s) 88
AjnI CCWGG 5 cut(s) 146, 439, 444, 454, 702
AleI CACNNNNGTG 1 cut(s) 790
AluBI AGCT 7 cut(s) 15, 229, 405, 497, 656, 964, 1012
AluI AGCT 7 cut(s) 15, 229, 405, 497, 656, 964, 1012
Alw21I GWGCWC 2 cut(s) 231, 1014
Alw26I GTCTC 1 cut(s) 974
AlwNI CAGNNNCTG 1 cut(s) 408
Ama87I CYCGRG 1 cut(s) 938
AoxI GGCC 7 cut(s) 103, 149, 442, 561, 812, 856, 878
ApeKI GCWGC 4 cut(s) 399, 402, 477, 884
ApoI RAATTY 1 cut(s) 613
ArsI GACNNNNNNTTYG 4 cut(s) 317, 321, 349, 353
AspLEI GCGC 2 cut(s) 465, 473
AspS9I GGNCC 8 cut(s) 8, 104, 150, 562, 595, 803, 812, 967
AsuC2I CCSGG 1 cut(s) 661
AvaI CYCGRG 1 cut(s) 938
AvaII GGWCC 4 cut(s) 8, 595, 803, 967
BalI TGGCCA 1 cut(s) 444
BanI GGYRCC 1 cut(s) 734
BanII GRGCYC 2 cut(s) 231, 1014
BbsI GAAGAC 2 cut(s) 184, 252
Bbv12I GWGCWC 2 cut(s) 231, 1014
BbvI GCAGC 4 cut(s) 411, 414, 489, 871
BccI CCATC 1 cut(s) 62
BceAI ACGGC 1 cut(s) 173
BciT130I CCWGG 5 cut(s) 148, 441, 446, 456, 704
BclI TGATCA 1 cut(s) 636
BcnI CCSGG 1 cut(s) 661
BcoDI GTCTC 1 cut(s) 974
BfrI CTTAAG 1 cut(s) 590
BfuAI ACCTGC 1 cut(s) 791
BglI GCCNNNNNGGC 1 cut(s) 162
BisI GCNGC 7 cut(s) 126, 400, 403, 431, 478, 885, 958
BlsI GCNGC 7 cut(s) 127, 401, 404, 432, 479, 886, 959
Bme1390I CCNGG 6 cut(s) 148, 441, 446, 456, 661, 704
Bme18I GGWCC 4 cut(s) 8, 595, 803, 967
BmeRI GACNNNNNGTC 1 cut(s) 91
BmeT110I CYCGRG 1 cut(s) 938
BmgBI CACGTC 1 cut(s) 88
BmgT120I GGNCC 8 cut(s) 8, 104, 150, 562, 595, 803, 812, 967
BmiI GGNNCC 9 cut(s) 9, 41, 106, 166, 453, 708, 736, 813, 969
BmrFI CCNGG 6 cut(s) 148, 441, 446, 456, 661, 704
BmrI ACTGGG 1 cut(s) 784
BmsI GCATC 1 cut(s) 580
BmuI ACTGGG 1 cut(s) 784
BpiI GAAGAC 2 cut(s) 184, 252
BpmI CTGGAG 4 cut(s) 155, 318, 358, 990
BpuMI CCSGG 1 cut(s) 661
BsaHI GRCGYC 1 cut(s) 123
BsaI GGTCTC 1 cut(s) 974
BsaJI CCNNGG 6 cut(s) 100, 146, 439, 558, 660, 702
BsaWI WCCGGW 1 cut(s) 322
BsaXI ACNNNNNCTCC 6 cut(s) 125, 155, 787, 817, 988, 1018
Bsc4I CCNNNNNNNGG 8 cut(s) 147, 445, 592, 709, 716, 795, 796, 931
Bse118I RCCGGY 2 cut(s) 858, 876
Bse1I ACTGG 2 cut(s) 157, 790
Bse3DI GCAATG 2 cut(s) 835, 999
BseBI CCWGG 5 cut(s) 148, 441, 446, 456, 704
BseDI CCNNGG 6 cut(s) 100, 146, 439, 558, 660, 702
BseGI GGATG 2 cut(s) 350, 1014
BseLI CCNNNNNNNGG 8 cut(s) 147, 445, 592, 709, 716, 795, 796, 931
BseMI GCAATG 2 cut(s) 835, 999
BseMII CTCAG 5 cut(s) 219, 225, 600, 755, 861
BseNI ACTGG 2 cut(s) 157, 790
BseRI GAGGAG 4 cut(s) 56, 127, 130, 532
BseXI GCAGC 4 cut(s) 411, 414, 489, 871
BseYI CCCAGC 3 cut(s) 152, 493, 904
Bsh1236I CGCG 2 cut(s) 465, 471
BshFI GGCC 7 cut(s) 105, 151, 444, 563, 814, 858, 880
BshNI GGYRCC 1 cut(s) 734
BsiHKAI GWGCWC 2 cut(s) 231, 1014
BsiHKCI CYCGRG 1 cut(s) 938
BsiSI CCGG 8 cut(s) 162, 198, 323, 660, 710, 732, 859, 877
BslFI GGGAC 6 cut(s) 21, 471, 498, 610, 887, 953
BslI CCNNNNNNNGG 8 cut(s) 147, 445, 592, 709, 716, 795, 796, 931
BsmAI GTCTC 1 cut(s) 974
BsmFI GGGAC 6 cut(s) 21, 471, 498, 610, 887, 953
BsnI GGCC 7 cut(s) 105, 151, 444, 563, 814, 858, 880
Bso31I GGTCTC 1 cut(s) 974
BsoBI CYCGRG 1 cut(s) 938
Bsp1286I GDGCHC 2 cut(s) 231, 1014
Bsp143I GATC 3 cut(s) 312, 636, 684
BspANI GGCC 7 cut(s) 105, 151, 444, 563, 814, 858, 880
BspCNI CTCAG 5 cut(s) 218, 224, 601, 754, 862
BspFNI CGCG 2 cut(s) 465, 471
BspLI GGNNCC 9 cut(s) 9, 41, 106, 166, 453, 708, 736, 813, 969
BspMI ACCTGC 1 cut(s) 791
BspQI GCTCTTC 1 cut(s) 869
BspT107I GGYRCC 1 cut(s) 734
BspTI CTTAAG 1 cut(s) 590
BspTNI GGTCTC 1 cut(s) 974
BsrBI CCGCTC 1 cut(s) 128
BsrDI GCAATG 2 cut(s) 835, 999
BsrFI RCCGGY 2 cut(s) 858, 876
BsrI ACTGG 2 cut(s) 157, 790
BssAI RCCGGY 2 cut(s) 858, 876
BssECI CCNNGG 6 cut(s) 100, 146, 439, 558, 660, 702
BssMI GATC 3 cut(s) 312, 636, 684
BssNI GRCGYC 1 cut(s) 123
Bst2UI CCWGG 5 cut(s) 148, 441, 446, 456, 704
Bst6I CTCTTC 1 cut(s) 869
BstACI GRCGYC 1 cut(s) 123
BstAFI CTTAAG 1 cut(s) 590
BstAPI GCANNNNNTGC 1 cut(s) 408
BstC8I GCNNGC 9 cut(s) 461, 475, 482, 654, 764, 860, 882, 889, 962
BstDEI CTNAG 6 cut(s) 205, 211, 609, 741, 780, 870
BstF5I GGATG 2 cut(s) 350, 1014
BstFNI CGCG 2 cut(s) 465, 471
BstHHI GCGC 2 cut(s) 465, 473
BstKTI GATC 3 cut(s) 315, 639, 687
BstMAI GTCTC 1 cut(s) 974
BstMBI GATC 3 cut(s) 312, 636, 684
BstMWI GCNNNNNNNGC 3 cut(s) 162, 408, 477
BstNI CCWGG 5 cut(s) 148, 441, 446, 456, 704
BstNSI RCATGY 1 cut(s) 1054
BstSCI CCNGG 6 cut(s) 146, 439, 444, 454, 659, 702
BstUI CGCG 2 cut(s) 465, 471
BstV1I GCAGC 4 cut(s) 411, 414, 489, 871
BstV2I GAAGAC 2 cut(s) 184, 252
BsuRI GGCC 7 cut(s) 105, 151, 444, 563, 814, 858, 880
BtrI CACGTC 1 cut(s) 88
BtsCI GGATG 2 cut(s) 350, 1014
BtsI GCAGTG 1 cut(s) 756
BtsIMutI CAGTG 2 cut(s) 756, 797
BveI ACCTGC 1 cut(s) 791
Cac8I GCNNGC 9 cut(s) 461, 475, 482, 654, 764, 860, 882, 889, 962
CaiI CAGNNNCTG 1 cut(s) 408
CfoI GCGC 2 cut(s) 465, 473
Cfr10I RCCGGY 2 cut(s) 858, 876
Cfr13I GGNCC 8 cut(s) 8, 104, 150, 562, 595, 803, 812, 967
CseI GACGC 3 cut(s) 131, 473, 477
Csp6I GTAC 1 cut(s) 874
CspCI CAANNNNNGTGG 2 cut(s) 817, 852
CviAII CATG 1 cut(s) 1051
CviQI GTAC 1 cut(s) 874
DdeI CTNAG 6 cut(s) 205, 211, 609, 741, 780, 870
DpnI GATC 3 cut(s) 314, 638, 686
DpnII GATC 3 cut(s) 312, 636, 684
DriI GACNNNNNGTC 1 cut(s) 91
EaeI YGGCCR 1 cut(s) 442
Eam1104I CTCTTC 1 cut(s) 869
Eam1105I GACNNNNNGTC 1 cut(s) 91
EarI CTCTTC 1 cut(s) 869
EciI GGCGGA 1 cut(s) 211
Ecl136II GAGCTC 2 cut(s) 229, 1012
Eco24I GRGCYC 2 cut(s) 231, 1014
Eco31I GGTCTC 1 cut(s) 974
Eco47I GGWCC 4 cut(s) 8, 595, 803, 967
Eco53kI GAGCTC 2 cut(s) 229, 1012
Eco57I CTGAAG 2 cut(s) 551, 573
Eco88I CYCGRG 1 cut(s) 938
EcoICRI GAGCTC 2 cut(s) 229, 1012
EcoO109I RGGNCCY 1 cut(s) 562
EcoRII CCWGG 5 cut(s) 146, 439, 444, 454, 702
EcoT38I GRGCYC 2 cut(s) 231, 1014
FaeI CATG 1 cut(s) 1054
FaiI YATR 2 cut(s) 29, 1052
FaqI GGGAC 6 cut(s) 21, 471, 498, 610, 887, 953
FatI CATG 1 cut(s) 1050
FauI CCCGC 4 cut(s) 29, 115, 497, 523
FbaI TGATCA 1 cut(s) 636
Fnu4HI GCNGC 7 cut(s) 126, 400, 403, 431, 478, 885, 958
FokI GGATG 2 cut(s) 337, 1001
FriOI GRGCYC 2 cut(s) 231, 1014
Fsp4HI GCNGC 7 cut(s) 126, 400, 403, 431, 478, 885, 958
GlaI GCGC 2 cut(s) 464, 472
GluI GCNGC 7 cut(s) 126, 400, 403, 431, 478, 885, 958
GsaI CCCAGC 3 cut(s) 156, 497, 908
GsuI CTGGAG 4 cut(s) 155, 318, 358, 990
HaeIII GGCC 7 cut(s) 105, 151, 444, 563, 814, 858, 880
HapII CCGG 8 cut(s) 162, 198, 323, 660, 710, 732, 859, 877
HgaI GACGC 3 cut(s) 131, 473, 477
HhaI GCGC 2 cut(s) 465, 473
Hin1I GRCGYC 1 cut(s) 123
Hin1II CATG 1 cut(s) 1054
Hin6I GCGC 2 cut(s) 463, 471
HinP1I GCGC 2 cut(s) 463, 471
HincII GTYRAC 2 cut(s) 340, 693
HindII GTYRAC 2 cut(s) 340, 693
HindIII AAGCTT 1 cut(s) 654
HinfI GANTC 5 cut(s) 92, 287, 347, 605, 623
HpaII CCGG 8 cut(s) 162, 198, 323, 660, 710, 732, 859, 877
Hpy166II GTNNAC 2 cut(s) 340, 693
Hpy188I TCNGA 4 cut(s) 214, 240, 604, 610
Hpy188III TCNNGA 7 cut(s) 297, 367, 418, 640, 938, 940, 1007
Hpy8I GTNNAC 2 cut(s) 340, 693
Hpy99I CGWCG 7 cut(s) 26, 62, 86, 89, 125, 236, 419
HpyAV CCTTC 4 cut(s) 301, 343, 575, 925
HpyCH4IV ACGT 2 cut(s) 87, 234
HpyCH4V TGCA 3 cut(s) 766, 828, 913
HpyF10VI GCNNNNNNNGC 3 cut(s) 162, 408, 477
HpyF3I CTNAG 6 cut(s) 205, 211, 609, 741, 780, 870
HpySE526I ACGT 2 cut(s) 87, 234
Hsp92I GRCGYC 1 cut(s) 123
Hsp92II CATG 1 cut(s) 1054
HspAI GCGC 2 cut(s) 463, 471
KroI GCCGGC 1 cut(s) 858
KroNI GCCGGC 1 cut(s) 860
Ksp22I TGATCA 1 cut(s) 636
Kzo9I GATC 3 cut(s) 312, 636, 684
LguI GCTCTTC 1 cut(s) 869
LmnI GCTCC 8 cut(s) 39, 170, 410, 416, 588, 664, 712, 746
Lsp1109I GCAGC 4 cut(s) 411, 414, 489, 871
LweI GCATC 1 cut(s) 580
MaeII ACGT 2 cut(s) 87, 234
MaeIII GTNAC 1 cut(s) 547
MalI GATC 3 cut(s) 314, 638, 686
MbiI CCGCTC 1 cut(s) 128
MboI GATC 3 cut(s) 312, 636, 684
MboII GAAGA 7 cut(s) 184, 257, 433, 682, 685, 694, 856
MfeI CAATTG 1 cut(s) 257
MhlI GDGCHC 2 cut(s) 231, 1014
MlsI TGGCCA 1 cut(s) 444
MluCI AATT 5 cut(s) 70, 257, 519, 613, 919
MluNI TGGCCA 1 cut(s) 444
MlyI GAGTC 2 cut(s) 101, 632
Mox20I TGGCCA 1 cut(s) 444
MroNI GCCGGC 1 cut(s) 858
MscI TGGCCA 1 cut(s) 444
MseI TTAA 1 cut(s) 591
MslI CAYNNNNRTG 1 cut(s) 790
Msp20I TGGCCA 1 cut(s) 444
MspCI CTTAAG 1 cut(s) 590
MspI CCGG 8 cut(s) 162, 198, 323, 660, 710, 732, 859, 877
MspR9I CCNGG 6 cut(s) 148, 441, 446, 456, 661, 704
MunI CAATTG 1 cut(s) 257
MvaI CCWGG 5 cut(s) 148, 441, 446, 456, 704
MvnI CGCG 2 cut(s) 465, 471
MwoI GCNNNNNNNGC 3 cut(s) 162, 408, 477
NaeI GCCGGC 1 cut(s) 860
NciI CCSGG 1 cut(s) 661
NdeII GATC 3 cut(s) 312, 636, 684
NgoMIV GCCGGC 1 cut(s) 858
NlaIII CATG 1 cut(s) 1054
NlaIV GGNNCC 9 cut(s) 9, 41, 106, 166, 453, 708, 736, 813, 969
NmeAIII GCCGAG 3 cut(s) 81, 250, 583
NspI RCATGY 1 cut(s) 1054
OliI CACNNNNGTG 1 cut(s) 790
PaeR7I CTCGAG 1 cut(s) 938
PciI ACATGT 1 cut(s) 1050
PciSI GCTCTTC 1 cut(s) 869
PcsI WCGNNNNNNNCGW 3 cut(s) 54, 342, 481
PdiI GCCGGC 1 cut(s) 860
PfeI GAWTC 3 cut(s) 287, 347, 605
PkrI GCNGC 7 cut(s) 127, 401, 404, 432, 479, 886, 959
PleI GAGTC 2 cut(s) 100, 631
PpsI GAGTC 2 cut(s) 100, 631
PscI ACATGT 1 cut(s) 1050
Psp124BI GAGCTC 2 cut(s) 231, 1014
Psp6I CCWGG 5 cut(s) 146, 439, 444, 454, 702
PspFI CCCAGC 3 cut(s) 152, 493, 904
PspGI CCWGG 5 cut(s) 146, 439, 444, 454, 702
PspN4I GGNNCC 9 cut(s) 9, 41, 106, 166, 453, 708, 736, 813, 969
PspPI GGNCC 8 cut(s) 8, 104, 150, 562, 595, 803, 812, 967
PstNI CAGNNNCTG 1 cut(s) 408
RsaI GTAC 1 cut(s) 875
RsaNI GTAC 1 cut(s) 874
RseI CAYNNNNRTG 1 cut(s) 790
SacI GAGCTC 2 cut(s) 231, 1014
SapI GCTCTTC 1 cut(s) 869
SaqAI TTAA 1 cut(s) 591
SatI GCNGC 7 cut(s) 126, 400, 403, 431, 478, 885, 958
Sau3AI GATC 3 cut(s) 312, 636, 684
Sau96I GGNCC 8 cut(s) 8, 104, 150, 562, 595, 803, 812, 967
SchI GAGTC 2 cut(s) 101, 632
ScrFI CCNGG 6 cut(s) 148, 441, 446, 456, 661, 704
SduI GDGCHC 2 cut(s) 231, 1014
SfaNI GCATC 1 cut(s) 580
Sfr274I CTCGAG 1 cut(s) 938
SinI GGWCC 4 cut(s) 8, 595, 803, 967
SlaI CTCGAG 1 cut(s) 938
SmiMI CAYNNNNRTG 1 cut(s) 790
SmlI CTYRAG 2 cut(s) 590, 938
SmoI CTYRAG 2 cut(s) 590, 938
Sse9I AATT 5 cut(s) 70, 257, 519, 613, 919
SstI GAGCTC 2 cut(s) 231, 1014
StyD4I CCNGG 6 cut(s) 146, 439, 444, 454, 659, 702
TaiI ACGT 2 cut(s) 90, 237
TaqI TCGA 7 cut(s) 21, 48, 57, 231, 393, 417, 939
TaqII GACCGA 2 cut(s) 25, 1013
TasI AATT 5 cut(s) 70, 257, 519, 613, 919
TauI GCSGC 3 cut(s) 128, 433, 960
TfiI GAWTC 3 cut(s) 287, 347, 605
Tru1I TTAA 1 cut(s) 591
Tru9I TTAA 1 cut(s) 591
TscAI CASTG 2 cut(s) 756, 797
TseI GCWGC 4 cut(s) 399, 402, 477, 884
TspDTI ATGAA 1 cut(s) 198
TspGWI ACGGA 2 cut(s) 376, 403
TspRI CASTG 2 cut(s) 756, 797
Vha464I CTTAAG 1 cut(s) 590
VpaK11BI GGWCC 4 cut(s) 8, 595, 803, 967
XapI RAATTY 1 cut(s) 613
XceI RCATGY 1 cut(s) 1054
XcmI CCANNNNNNNNNTGG 1 cut(s) 452
XhoI CTCGAG 1 cut(s) 938
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.