Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0012520

Physical Location & Seq

Genomic Coordinates Forward (+)

56695199 .. 56698819

Gene Structure 3621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG294300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGTTCATTTGGAATGGCTGTCCAACTTTGTTGAGAATTCCGAGTACTCTGGCGTAAACCTCACCATCAACAAGCAACAGGAGTCTTCCCTGGTCAACAAGGAGTCTTCCCACCAACAGTTCCAGACATCCAGCCCCATTTCTGTGCTTGACAGCAGCAGCTCCTGCTCGGGCGAGAAGAATGTGCTTGAAGGATCGATTGCTCCTGGCAGGCGCGGACGTGCTAGAAGCAAGCGTCCACGCCCTGCCACCTTCAATCCTCGCTCCGCAATTCAACTGATTTCCCCTGCTTCCTCTGTTTCGGAGATTGACAACCCTCTGCAGCAGCATTCGTTGTTTGCCCCTAAGGTGTTTTCGGACTCTGAGAACTTTGCAGAGTCTCGTCCTGTGGTGAAGATGCCCAAACAAGCTTCCGGGGAGCAGAAGAAGAAGAAGAGAATCAAGTTGCCCCCTCCCCCTAAAGTTCCAGGGGAGCTGAATGAGGATACCCCAGTGCAGGGATCAGTCAGGAAGTGCTTGCATTGTGAGATTACCAAGACACCCCAGTGGAGGGCAGGCCCAATGGGGCCAAAAACCCTTTGCAATGCCTGTGGAGTGCGCTACAAGTCAGGCAGGCTCTTCCCTGAGTACCGTCCTGCAGCTAGTCCAACTTTTGTTCCGGCCTTGCACTCCAATTCCCACAAGAAGGTTATCGAGATGAGAACCAAGGGTGGCGAGATGGCTGCTGTTCCCGATAACAGCATCCCAGAACTCATTCCGAATAACAACAGCAGCATTTCGCTGGATTACATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090351 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

264

Amino Acids

29.03

Weight (kDa)

9.53

Isoelectric Point (pI)

66.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	172 - 205	1.5e-14	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54810 AT3G54810
fragaria_vesca	FvH4_7g19340 FvH4_7g19340 FvH4_7g19340
malus_domestica	MD01G1108000.v1.1 MD07G1173900.v1.1
prunus_persica	Prupe.2G212900_v2.0.a1 Prupe.2G212900_v2.0.a1
pyrus_communis	pycom01g13490 pycom07g16830
rosa_chinensis	RchiOBHm_Chr1g0363221
rosa_laevigata	RLG00000027582
rosa_multiflora	Rmu_sc0001770.1_g000004
rosa_roxburghii	Rroxscaffold_4G00293350
rosa_samantha	Rh1AG314400 Rh1CG294300 Rh1DG308700
rosa_wichuraiana	Rw1G027860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	216
AciI	CCGC	2 cut(s)	216, 267
AclWI	GGATC	2 cut(s)	202, 508
AcsI	RAATTY	1 cut(s)	37
AfaI	GTAC	2 cut(s)	47, 629
AfiI	CCNNNNNNNGG	5 cut(s)	496, 497, 549, 550, 685
AflIII	ACRYGT	1 cut(s)	789
AgsI	TTSAA	3 cut(s)	191, 256, 275
AjiI	CACGTC	1 cut(s)	221
AjnI	CCWGG	3 cut(s)	90, 205, 466
AleI	CACNNNNGTG	1 cut(s)	544
AluBI	AGCT	4 cut(s)	162, 410, 475, 641
AluI	AGCT	4 cut(s)	162, 410, 475, 641
Alw26I	GTCTC	1 cut(s)	384
AlwI	GGATC	2 cut(s)	202, 508
AlwNI	CAGNNNCTG	1 cut(s)	165
Ama87I	CYCGRG	1 cut(s)	169
AoxI	GGCC	3 cut(s)	556, 566, 660
ApeKI	GCWGC	7 cut(s)	156, 159, 322, 325, 638, 722, 771
ApoI	RAATTY	1 cut(s)	37
Asp700I	GAANNNNTTC	1 cut(s)	753
AspLEI	GCGC	2 cut(s)	216, 600
AspS9I	GGNCC	2 cut(s)	557, 566
AsuC2I	CCSGG	1 cut(s)	415
AsuHPI	GGTGA	2 cut(s)	55, 403
AvaI	CYCGRG	1 cut(s)	169
AxyI	CCTNAGG	1 cut(s)	345
BaeI	ACNNNNGTAYC	2 cut(s)	477, 510
BbsI	GAAGAC	2 cut(s)	78, 99
BbvI	GCAGC	7 cut(s)	168, 171, 334, 337, 650, 709, 783
BccI	CCATC	2 cut(s)	74, 712
BcgI	CGANNNNNNTGC	2 cut(s)	704, 738
BciT130I	CCWGG	3 cut(s)	92, 207, 468
BciVI	GTATCC	1 cut(s)	478
BcnI	CCSGG	1 cut(s)	415
BcoDI	GTCTC	1 cut(s)	384
BfaI	CTAG	2 cut(s)	225, 642
BfmI	CTRYAG	2 cut(s)	320, 636
BfuI	GTATCC	1 cut(s)	478
BisI	GCNGC	7 cut(s)	157, 160, 323, 326, 639, 723, 772
BlsI	GCNGC	7 cut(s)	158, 161, 324, 327, 640, 724, 773
BmcAI	AGTACT	1 cut(s)	47
Bme1390I	CCNGG	4 cut(s)	92, 207, 415, 468
BmeT110I	CYCGRG	1 cut(s)	169
BmgBI	CACGTC	1 cut(s)	221
BmgT120I	GGNCC	2 cut(s)	557, 566
BmiI	GGNNCC	1 cut(s)	567
BmrFI	CCNGG	4 cut(s)	92, 207, 415, 468
BmrI	ACTGGG	2 cut(s)	485, 538
BmsI	GCATC	2 cut(s)	387, 750
BmuI	ACTGGG	2 cut(s)	485, 538
BpiI	GAAGAC	2 cut(s)	78, 99
BpuMI	CCSGG	1 cut(s)	415
Bsa29I	ATCGAT	1 cut(s)	197
BsaJI	CCNNGG	4 cut(s)	90, 414, 467, 705
Bsc4I	CCNNNNNNNGG	5 cut(s)	496, 497, 549, 550, 685
Bse1I	ACTGG	2 cut(s)	491, 544
Bse21I	CCTNAGG	1 cut(s)	345
Bse3DI	GCAATG	1 cut(s)	589
BseBI	CCWGG	3 cut(s)	92, 207, 468
BseCI	ATCGAT	1 cut(s)	197
BseDI	CCNNGG	4 cut(s)	90, 414, 467, 705
BseGI	GGATG	2 cut(s)	128, 741
BseLI	CCNNNNNNNGG	5 cut(s)	496, 497, 549, 550, 685
BseMI	GCAATG	1 cut(s)	589
BseMII	CTCAG	2 cut(s)	354, 615
BseNI	ACTGG	2 cut(s)	491, 544
BseXI	GCAGC	7 cut(s)	168, 171, 334, 337, 650, 709, 783
BsgI	GTGCAG	1 cut(s)	515
Bsh1236I	CGCG	1 cut(s)	216
BshFI	GGCC	3 cut(s)	558, 568, 662
BshVI	ATCGAT	1 cut(s)	197
BsiHKCI	CYCGRG	1 cut(s)	169
BsiSI	CCGG	2 cut(s)	414, 659
BslI	CCNNNNNNNGG	5 cut(s)	496, 497, 549, 550, 685
BsmAI	GTCTC	1 cut(s)	384
BsmI	GAATGC	1 cut(s)	328
BsnI	GGCC	3 cut(s)	558, 568, 662
BsoBI	CYCGRG	1 cut(s)	169
Bsp143I	GATC	2 cut(s)	194, 500
BspACI	CCGC	2 cut(s)	216, 267
BspANI	GGCC	3 cut(s)	558, 568, 662
BspCNI	CTCAG	2 cut(s)	355, 616
BspDI	ATCGAT	1 cut(s)	197
BspFNI	CGCG	1 cut(s)	216
BspLI	GGNNCC	1 cut(s)	567
BspMAI	CTGCAG	2 cut(s)	324, 640
BspPI	GGATC	2 cut(s)	202, 508
BspQI	GCTCTTC	1 cut(s)	623
BsrDI	GCAATG	1 cut(s)	589
BsrI	ACTGG	2 cut(s)	491, 544
BssECI	CCNNGG	4 cut(s)	90, 414, 467, 705
BssMI	GATC	2 cut(s)	194, 500
BssT1I	CCWWGG	1 cut(s)	705
Bst2UI	CCWGG	3 cut(s)	92, 207, 468
Bst4CI	ACNGT	2 cut(s)	120, 632
Bst6I	CTCTTC	2 cut(s)	428, 623
BstAPI	GCANNNNNTGC	1 cut(s)	165
BstC8I	GCNNGC	5 cut(s)	212, 233, 518, 556, 614
BstDEI	CTNAG	3 cut(s)	345, 363, 624
BstF5I	GGATG	2 cut(s)	128, 741
BstFNI	CGCG	1 cut(s)	216
BstHHI	GCGC	2 cut(s)	216, 600
BstKTI	GATC	2 cut(s)	197, 503
BstMAI	GTCTC	1 cut(s)	384
BstMBI	GATC	2 cut(s)	194, 500
BstMWI	GCNNNNNNNGC	1 cut(s)	165
BstNI	CCWGG	3 cut(s)	92, 207, 468
BstNSI	RCATGY	1 cut(s)	793
BstSCI	CCNGG	4 cut(s)	90, 205, 413, 466
BstSFI	CTRYAG	2 cut(s)	320, 636
BstUI	CGCG	1 cut(s)	216
BstV1I	GCAGC	7 cut(s)	168, 171, 334, 337, 650, 709, 783
BstV2I	GAAGAC	2 cut(s)	78, 99
Bsu15I	ATCGAT	1 cut(s)	197
Bsu36I	CCTNAGG	1 cut(s)	345
BsuI	GTATCC	1 cut(s)	478
BsuRI	GGCC	3 cut(s)	558, 568, 662
BsuTUI	ATCGAT	1 cut(s)	197
BtrI	CACGTC	1 cut(s)	221
BtsCI	GGATG	2 cut(s)	128, 741
BtsIMutI	CAGTG	2 cut(s)	498, 551
Cac8I	GCNNGC	5 cut(s)	212, 233, 518, 556, 614
CaiI	CAGNNNCTG	1 cut(s)	165
CfoI	GCGC	2 cut(s)	216, 600
Cfr13I	GGNCC	2 cut(s)	557, 566
ClaI	ATCGAT	1 cut(s)	197
CseI	GACGC	1 cut(s)	224
Csp6I	GTAC	2 cut(s)	46, 628
CspCI	CAANNNNNGTGG	2 cut(s)	571, 606
CviAII	CATG	1 cut(s)	790
CviQI	GTAC	2 cut(s)	46, 628
DdeI	CTNAG	3 cut(s)	345, 363, 624
DpnI	GATC	2 cut(s)	196, 502
DpnII	GATC	2 cut(s)	194, 500
Eam1104I	CTCTTC	2 cut(s)	428, 623
EarI	CTCTTC	2 cut(s)	428, 623
Eco130I	CCWWGG	1 cut(s)	705
Eco81I	CCTNAGG	1 cut(s)	345
Eco88I	CYCGRG	1 cut(s)	169
EcoRI	GAATTC	1 cut(s)	37
EcoRII	CCWGG	3 cut(s)	90, 205, 466
EcoT14I	CCWWGG	1 cut(s)	705
ErhI	CCWWGG	1 cut(s)	705
FaeI	CATG	1 cut(s)	793
FaiI	YATR	1 cut(s)	791
FatI	CATG	1 cut(s)	789
Fnu4HI	GCNGC	7 cut(s)	157, 160, 323, 326, 639, 723, 772
FokI	GGATG	2 cut(s)	115, 728
Fsp4HI	GCNGC	7 cut(s)	157, 160, 323, 326, 639, 723, 772
FspBI	CTAG	2 cut(s)	225, 642
GlaI	GCGC	2 cut(s)	215, 599
GluI	GCNGC	7 cut(s)	157, 160, 323, 326, 639, 723, 772
HaeIII	GGCC	3 cut(s)	558, 568, 662
HapII	CCGG	2 cut(s)	414, 659
HgaI	GACGC	1 cut(s)	224
HhaI	GCGC	2 cut(s)	216, 600
Hin1II	CATG	1 cut(s)	793
Hin6I	GCGC	2 cut(s)	214, 598
HinP1I	GCGC	2 cut(s)	214, 598
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HindIII	AAGCTT	1 cut(s)	408
HinfI	GANTC	5 cut(s)	83, 104, 359, 377, 438
HpaII	CCGG	2 cut(s)	414, 659
HphI	GGTGA	2 cut(s)	55, 403
Hpy166II	GTNNAC	3 cut(s)	58, 97, 239
Hpy188I	TCNGA	5 cut(s)	43, 304, 358, 364, 759
Hpy188III	TCNNGA	4 cut(s)	124, 508, 694, 731
Hpy8I	GTNNAC	3 cut(s)	58, 97, 239
HpyAV	CCTTC	3 cut(s)	185, 262, 679
HpyCH4III	ACNGT	2 cut(s)	120, 632
HpyCH4IV	ACGT	1 cut(s)	220
HpyCH4V	TGCA	7 cut(s)	322, 374, 496, 520, 582, 638, 667
HpyF10VI	GCNNNNNNNGC	1 cut(s)	165
HpyF3I	CTNAG	3 cut(s)	345, 363, 624
HpySE526I	ACGT	1 cut(s)	220
Hsp92II	CATG	1 cut(s)	793
HspAI	GCGC	2 cut(s)	214, 598
Kzo9I	GATC	2 cut(s)	194, 500
LguI	GCTCTTC	1 cut(s)	623
LmnI	GCTCC	5 cut(s)	167, 208, 269, 418, 472
Lsp1109I	GCAGC	7 cut(s)	168, 171, 334, 337, 650, 709, 783
LweI	GCATC	2 cut(s)	387, 750
MaeI	CTAG	2 cut(s)	225, 642
MaeII	ACGT	1 cut(s)	220
MalI	GATC	2 cut(s)	196, 502
MboI	GATC	2 cut(s)	194, 500
MboII	GAAGA	9 cut(s)	78, 99, 190, 406, 436, 439, 442, 445, 610
MluCI	AATT	3 cut(s)	37, 270, 673
MlyI	GAGTC	4 cut(s)	92, 113, 353, 386
MmeI	TCCRAC	2 cut(s)	48, 671
MnlI	CCTC	7 cut(s)	71, 270, 304, 327, 462, 475, 543
MroXI	GAANNNNTTC	1 cut(s)	753
MslI	CAYNNNNRTG	2 cut(s)	143, 544
MspI	CCGG	2 cut(s)	414, 659
MspR9I	CCNGG	4 cut(s)	92, 207, 415, 468
Mva1269I	GAATGC	1 cut(s)	328
MvaI	CCWGG	3 cut(s)	92, 207, 468
MvnI	CGCG	1 cut(s)	216
MwoI	GCNNNNNNNGC	1 cut(s)	165
NciI	CCSGG	1 cut(s)	415
NdeII	GATC	2 cut(s)	194, 500
NlaIII	CATG	1 cut(s)	793
NlaIV	GGNNCC	1 cut(s)	567
NspI	RCATGY	1 cut(s)	793
OliI	CACNNNNGTG	1 cut(s)	544
PciI	ACATGT	1 cut(s)	789
PciSI	GCTCTTC	1 cut(s)	623
PctI	GAATGC	1 cut(s)	328
PdmI	GAANNNNTTC	1 cut(s)	753
PfeI	GAWTC	1 cut(s)	438
PkrI	GCNGC	7 cut(s)	158, 161, 324, 327, 640, 724, 773
PleI	GAGTC	4 cut(s)	91, 112, 353, 385
PpsI	GAGTC	4 cut(s)	91, 112, 353, 385
PscI	ACATGT	1 cut(s)	789
Psp6I	CCWGG	3 cut(s)	90, 205, 466
PspGI	CCWGG	3 cut(s)	90, 205, 466
PspN4I	GGNNCC	1 cut(s)	567
PspPI	GGNCC	2 cut(s)	557, 566
PstI	CTGCAG	2 cut(s)	324, 640
PstNI	CAGNNNCTG	1 cut(s)	165
RsaI	GTAC	2 cut(s)	47, 629
RsaNI	GTAC	2 cut(s)	46, 628
RseI	CAYNNNNRTG	2 cut(s)	143, 544
SapI	GCTCTTC	1 cut(s)	623
SatI	GCNGC	7 cut(s)	157, 160, 323, 326, 639, 723, 772
Sau3AI	GATC	2 cut(s)	194, 500
Sau96I	GGNCC	2 cut(s)	557, 566
ScaI	AGTACT	1 cut(s)	47
SchI	GAGTC	4 cut(s)	92, 113, 353, 386
ScrFI	CCNGG	4 cut(s)	92, 207, 415, 468
SetI	ASST	9 cut(s)	63, 164, 223, 254, 351, 412, 477, 643, 690
SfaNI	GCATC	2 cut(s)	387, 750
SfcI	CTRYAG	2 cut(s)	320, 636
SmiMI	CAYNNNNRTG	2 cut(s)	143, 544
Sse9I	AATT	3 cut(s)	37, 270, 673
SsiI	CCGC	2 cut(s)	216, 267
SspMI	CTAG	2 cut(s)	225, 642
StyD4I	CCNGG	4 cut(s)	90, 205, 413, 466
StyI	CCWWGG	1 cut(s)	705
TaaI	ACNGT	2 cut(s)	120, 632
TaiI	ACGT	1 cut(s)	223
TaqI	TCGA	2 cut(s)	197, 693
TasI	AATT	3 cut(s)	37, 270, 673
TatI	WGTACW	1 cut(s)	45
TfiI	GAWTC	1 cut(s)	438
TscAI	CASTG	2 cut(s)	498, 551
TseI	GCWGC	7 cut(s)	156, 159, 322, 325, 638, 722, 771
TspRI	CASTG	2 cut(s)	498, 551
XapI	RAATTY	1 cut(s)	37
XceI	RCATGY	1 cut(s)	793
XmnI	GAANNNNTTC	1 cut(s)	753
XspI	CTAG	2 cut(s)	225, 642
ZrmI	AGTACT	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.