Prupe.2G212900_v2.0.a1

Transcriptional activator that specifically binds 5'- GATA-3' or 5'-GAT-3' motifs within gene promoters

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Forward (+)
24464517 .. 24467954
3438 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G212900.2

Sequence Viewer

Length: 1056 bp
ATGATCGGACCGAACTTCATCGACGAGATAGACTGCGGGAGCTTCTTTGACACCATTGACGACCTCCTCGACTTCCCAAACGACGACGTCGAGTCCGGACTGGGCCCCGCCCCTGACTGCAACGCTGCGTTTAACAACTCCCTCTGGCCCAACCAGTCCGGCTCGCTCCCGGCTCCCAACGACGCCGTTTTCTCAGCCGGCAACTCCGCCTCCGACCTCTCTGCCGAGCTCTCCGTTCCGATTGAAGACATAGTTCAATTGGAATGGCTGTCGAACTTTGTTGAGGATTCCTTCTCTGGTGGAAGCCTCACCATCAACAAACCAGACTCCTTCATCAACAAGGACACATCCCACCGCCAGTTCCAGACCTCCAGCCCAATTTCTGTGCTTGATAGCAGTAGCTCTTGCTCAGGTGACAAGAATGTGCCTCAAAGTCCTGGACCGGTCGCTGCTCCTGGTAAGCGTGGACGTGCTCGCAGCAAGCGTCCACGCCCGGCCACCTTCAACCCCCGCTCCGCAATTCAACTCATTTCCCCTGCTTCCTCTGTTACTGAGGCAGAGGGTCCCCAGGCTGAGCCATTCCTTGCCCCAAAGATCCCTTCTGATTCTGAGAATTTTGCAGAGTCTCGTCCTGTGATCAAGATACCAAAACAAGCTTCTGGGGAGCAGAAGAAGAAGAAGAAGCTCAAGGTGTCGCTTCCCCTGGCTCCCTTCGAGGGGAATCAAAATTCCGGTCCTACACAGGCAGCAGTGAGAAAATGCTTGCATTGTGAGATTACTAAGACACCCCAGTGGAGGGCAGGCCCAATGGGACCAAAAACCCTATGCAATGCCTGCGGCGTCCGCTACAAGTCAGGCCGGCTCTTTCCTGAGTACCGGCCTGCTGCCAGTCCTACTTTTGTTCCATCCTTGCACTCCAATTCCCATAAGAAGGTTCTTGAGATGAGAACCAAGGGTGGCGAGTTGGTTGTTTTTGGAGAGACTGCAACAGCTATGAACGAAACTCCCGAACTCATTCCGAATACTAACAGCAGCATCTCCATGGATTACATGTGA

Protein Analysis

352

Amino Acids

37.67

Weight (kDa)

5.71

Isoelectric Point (pI)

50.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012520)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 90
AccBSI CCGCTC 1 cut(s) 513
AccIII TCCGGA 1 cut(s) 95
AciI CCGC 8 cut(s) 36, 108, 207, 355, 511, 516, 837, 844
AclWI GGATC 1 cut(s) 589
AcoI YGGCCR 1 cut(s) 495
AcsI RAATTY 2 cut(s) 613, 727
AcyI GRCGYC 3 cut(s) 87, 183, 840
AfaI GTAC 1 cut(s) 875
AfiI CCNNNNNNNGG 5 cut(s) 716, 717, 795, 796, 931
AflIII ACRYGT 1 cut(s) 1050
AgeI ACCGGT 1 cut(s) 442
AgsI TTSAA 4 cut(s) 245, 257, 505, 524
AhdI GACNNNNNGTC 1 cut(s) 91
AjiI CACGTC 1 cut(s) 470
AjnI CCWGG 4 cut(s) 436, 454, 567, 702
AjuI GAANNNNNNNTTGG 4 cut(s) 583, 615, 640, 672
AleI CACNNNNGTG 1 cut(s) 790
AluBI AGCT 6 cut(s) 42, 229, 402, 656, 685, 992
AluI AGCT 6 cut(s) 42, 229, 402, 656, 685, 992
Alw21I GWGCWC 2 cut(s) 231, 475
Alw26I GTCTC 2 cut(s) 630, 974
AlwI GGATC 1 cut(s) 589
Aor13HI TCCGGA 1 cut(s) 95
AoxI GGCC 6 cut(s) 103, 146, 495, 802, 856, 878
ApaI GGGCCC 1 cut(s) 107
ApeKI GCWGC 6 cut(s) 125, 449, 477, 746, 884, 1032
ApoI RAATTY 2 cut(s) 613, 727
ArsI GACNNNNNNTTYG 2 cut(s) 718, 750
AsiGI ACCGGT 1 cut(s) 442
Asp700I GAANNNNTTC 1 cut(s) 1014
AspS9I GGNCC 9 cut(s) 8, 103, 104, 147, 440, 563, 734, 803, 812
AsuC2I CCSGG 2 cut(s) 170, 494
AsuHPI GGTGA 2 cut(s) 301, 425
AvaII GGWCC 5 cut(s) 8, 440, 563, 734, 812
BaeGI GKGCMC 1 cut(s) 107
BanII GRGCYC 2 cut(s) 107, 231
BbsI GAAGAC 1 cut(s) 252
Bbv12I GWGCWC 2 cut(s) 231, 475
BbvI GCAGC 6 cut(s) 112, 436, 489, 758, 871, 1044
BccI CCATC 2 cut(s) 320, 913
BceAI ACGGC 1 cut(s) 170
BcgI CGANNNNNNTGC 2 cut(s) 203, 237
BciT130I CCWGG 4 cut(s) 438, 456, 569, 704
BclI TGATCA 1 cut(s) 636
BcnI CCSGG 2 cut(s) 170, 494
BcoDI GTCTC 2 cut(s) 630, 974
BisI GCNGC 7 cut(s) 126, 450, 478, 747, 838, 885, 1033
BlpI GCTNAGC 1 cut(s) 573
BlsI GCNGC 7 cut(s) 127, 451, 479, 748, 839, 886, 1034
Bme1390I CCNGG 6 cut(s) 170, 438, 456, 494, 569, 704
Bme18I GGWCC 5 cut(s) 8, 440, 563, 734, 812
BmeRI GACNNNNNGTC 1 cut(s) 91
BmgBI CACGTC 1 cut(s) 470
BmgT120I GGNCC 9 cut(s) 8, 103, 104, 147, 440, 563, 734, 803, 812
BmiI GGNNCC 7 cut(s) 105, 106, 174, 564, 565, 708, 813
BmrFI CCNGG 6 cut(s) 170, 438, 456, 494, 569, 704
BmrI ACTGGG 2 cut(s) 110, 784
BmsI GCATC 1 cut(s) 1044
BmuI ACTGGG 2 cut(s) 110, 784
BpiI GAAGAC 1 cut(s) 252
BpmI CTGGAG 1 cut(s) 355
Bpu10I CCTNAGC 1 cut(s) 409
Bpu1102I GCTNAGC 1 cut(s) 573
BpuEI CTTGAG 2 cut(s) 671, 959
BpuMI CCSGG 2 cut(s) 170, 494
BsaHI GRCGYC 3 cut(s) 87, 183, 840
BsaJI CCNNGG 4 cut(s) 567, 702, 951, 1041
BsaWI WCCGGW 3 cut(s) 95, 442, 731
BsaXI ACNNNNNCTCC 4 cut(s) 194, 224, 497, 527
Bsc4I CCNNNNNNNGG 5 cut(s) 716, 717, 795, 796, 931
Bse118I RCCGGY 4 cut(s) 197, 442, 858, 876
Bse1I ACTGG 5 cut(s) 105, 154, 358, 790, 888
Bse3DI GCAATG 1 cut(s) 835
BseAI TCCGGA 1 cut(s) 95
BseBI CCWGG 4 cut(s) 438, 456, 569, 704
BseDI CCNNGG 4 cut(s) 567, 702, 951, 1041
BseGI GGATG 2 cut(s) 347, 905
BseLI CCNNNNNNNGG 5 cut(s) 716, 717, 795, 796, 931
BseMI GCAATG 1 cut(s) 835
BseMII CTCAG 6 cut(s) 207, 423, 543, 564, 600, 861
BseNI ACTGG 5 cut(s) 105, 154, 358, 790, 888
BseRI GAGGAG 1 cut(s) 56
BseSI GKGCMC 1 cut(s) 107
BseXI GCAGC 6 cut(s) 112, 436, 489, 758, 871, 1044
Bsh1285I CGRYCG 1 cut(s) 447
BshFI GGCC 6 cut(s) 105, 148, 497, 804, 858, 880
BshTI ACCGGT 1 cut(s) 442
BsiEI CGRYCG 1 cut(s) 447
BsiHKAI GWGCWC 2 cut(s) 231, 475
BsiSI CCGG 9 cut(s) 96, 159, 170, 198, 443, 494, 732, 859, 877
BslFI GGGAC 2 cut(s) 549, 825
BslI CCNNNNNNNGG 5 cut(s) 716, 717, 795, 796, 931
BsmAI GTCTC 2 cut(s) 630, 974
BsmFI GGGAC 2 cut(s) 549, 825
BsnI GGCC 6 cut(s) 105, 148, 497, 804, 858, 880
Bsp120I GGGCCC 1 cut(s) 103
Bsp1286I GDGCHC 3 cut(s) 107, 231, 475
Bsp13I TCCGGA 1 cut(s) 95
Bsp143I GATC 3 cut(s) 3, 594, 636
Bsp1720I GCTNAGC 1 cut(s) 573
Bsp19I CCATGG 1 cut(s) 1041
BspACI CCGC 8 cut(s) 36, 108, 207, 355, 511, 516, 837, 844
BspANI GGCC 6 cut(s) 105, 148, 497, 804, 858, 880
BspCNI CTCAG 6 cut(s) 206, 422, 544, 565, 601, 862
BspEI TCCGGA 1 cut(s) 95
BspLI GGNNCC 7 cut(s) 105, 106, 174, 564, 565, 708, 813
BspPI GGATC 1 cut(s) 589
BsrBI CCGCTC 1 cut(s) 513
BsrDI GCAATG 1 cut(s) 835
BsrFI RCCGGY 4 cut(s) 197, 442, 858, 876
BsrI ACTGG 5 cut(s) 105, 154, 358, 790, 888
BssAI RCCGGY 4 cut(s) 197, 442, 858, 876
BssECI CCNNGG 4 cut(s) 567, 702, 951, 1041
BssMI GATC 3 cut(s) 3, 594, 636
BssNI GRCGYC 3 cut(s) 87, 183, 840
BssT1I CCWWGG 2 cut(s) 951, 1041
Bst2UI CCWGG 4 cut(s) 438, 456, 569, 704
BstACI GRCGYC 3 cut(s) 87, 183, 840
BstAPI GCANNNNNTGC 1 cut(s) 834
BstC8I GCNNGC 9 cut(s) 164, 199, 475, 482, 764, 802, 835, 860, 882
BstDEI CTNAG 7 cut(s) 193, 409, 552, 573, 609, 780, 870
BstDSI CCRYGG 1 cut(s) 1041
BstF5I GGATG 2 cut(s) 347, 905
BstKTI GATC 3 cut(s) 6, 597, 639
BstMAI GTCTC 2 cut(s) 630, 974
BstMBI GATC 3 cut(s) 3, 594, 636
BstMCI CGRYCG 1 cut(s) 447
BstMWI GCNNNNNNNGC 2 cut(s) 834, 843
BstNI CCWGG 4 cut(s) 438, 456, 569, 704
BstNSI RCATGY 1 cut(s) 1054
BstSCI CCNGG 6 cut(s) 168, 436, 454, 492, 567, 702
BstSLI GKGCMC 1 cut(s) 107
BstV1I GCAGC 6 cut(s) 112, 436, 489, 758, 871, 1044
BstV2I GAAGAC 1 cut(s) 252
BstX2I RGATCY 1 cut(s) 594
BstYI RGATCY 1 cut(s) 594
BsuRI GGCC 6 cut(s) 105, 148, 497, 804, 858, 880
BtgI CCRYGG 1 cut(s) 1041
BtrI CACGTC 1 cut(s) 470
BtsCI GGATG 2 cut(s) 347, 905
BtsI GCAGTG 1 cut(s) 756
BtsIMutI CAGTG 2 cut(s) 756, 797
Cac8I GCNNGC 9 cut(s) 164, 199, 475, 482, 764, 802, 835, 860, 882
Cfr10I RCCGGY 4 cut(s) 197, 442, 858, 876
Cfr13I GGNCC 9 cut(s) 8, 103, 104, 147, 440, 563, 734, 803, 812
CpoI CGGWCCG 1 cut(s) 8
CseI GACGC 3 cut(s) 191, 473, 829
Csp6I GTAC 1 cut(s) 874
CspAI ACCGGT 1 cut(s) 442
CspI CGGWCCG 1 cut(s) 8
CviAII CATG 2 cut(s) 1042, 1051
CviQI GTAC 1 cut(s) 874
DdeI CTNAG 7 cut(s) 193, 409, 552, 573, 609, 780, 870
DpnI GATC 3 cut(s) 5, 596, 638
DpnII GATC 3 cut(s) 3, 594, 636
DriI GACNNNNNGTC 1 cut(s) 91
EaeI YGGCCR 1 cut(s) 495
Eam1105I GACNNNNNGTC 1 cut(s) 91
EciI GGCGGA 1 cut(s) 196
Ecl136II GAGCTC 1 cut(s) 229
Eco130I CCWWGG 2 cut(s) 951, 1041
Eco24I GRGCYC 2 cut(s) 107, 231
Eco47I GGWCC 5 cut(s) 8, 440, 563, 734, 812
Eco53kI GAGCTC 1 cut(s) 229
EcoICRI GAGCTC 1 cut(s) 229
EcoO109I RGGNCCY 2 cut(s) 104, 563
EcoRII CCWGG 4 cut(s) 436, 454, 567, 702
EcoT14I CCWWGG 2 cut(s) 951, 1041
EcoT38I GRGCYC 2 cut(s) 107, 231
ErhI CCWWGG 2 cut(s) 951, 1041
FaeI CATG 2 cut(s) 1045, 1054
FaiI YATR 6 cut(s) 251, 826, 927, 995, 1043, 1052
FaqI GGGAC 2 cut(s) 549, 825
FatI CATG 2 cut(s) 1041, 1050
FauI CCCGC 3 cut(s) 29, 115, 518
FbaI TGATCA 1 cut(s) 636
Fnu4HI GCNGC 7 cut(s) 126, 450, 478, 747, 838, 885, 1033
FokI GGATG 2 cut(s) 334, 892
FriOI GRGCYC 2 cut(s) 107, 231
Fsp4HI GCNGC 7 cut(s) 126, 450, 478, 747, 838, 885, 1033
GluI GCNGC 7 cut(s) 126, 450, 478, 747, 838, 885, 1033
GsuI CTGGAG 1 cut(s) 355
HaeIII GGCC 6 cut(s) 105, 148, 497, 804, 858, 880
HapII CCGG 9 cut(s) 96, 159, 170, 198, 443, 494, 732, 859, 877
HgaI GACGC 3 cut(s) 191, 473, 829
Hin1I GRCGYC 3 cut(s) 87, 183, 840
Hin1II CATG 2 cut(s) 1045, 1054
HindIII AAGCTT 1 cut(s) 654
HinfI GANTC 6 cut(s) 92, 287, 326, 605, 623, 721
HpaII CCGG 9 cut(s) 96, 159, 170, 198, 443, 494, 732, 859, 877
HphI GGTGA 2 cut(s) 301, 425
Hpy166II GTNNAC 2 cut(s) 467, 488
Hpy188I TCNGA 6 cut(s) 8, 214, 240, 604, 610, 1020
Hpy188III TCNNGA 6 cut(s) 96, 364, 640, 869, 938, 1007
Hpy8I GTNNAC 2 cut(s) 467, 488
Hpy99I CGWCG 5 cut(s) 26, 86, 89, 92, 185
HpyAV CCTTC 6 cut(s) 301, 340, 511, 609, 721, 925
HpyCH4IV ACGT 2 cut(s) 87, 469
HpyCH4V TGCA 6 cut(s) 120, 620, 766, 828, 913, 986
HpyF10VI GCNNNNNNNGC 2 cut(s) 834, 843
HpyF3I CTNAG 7 cut(s) 193, 409, 552, 573, 609, 780, 870
HpySE526I ACGT 2 cut(s) 87, 469
Hsp92I GRCGYC 3 cut(s) 87, 183, 840
Hsp92II CATG 2 cut(s) 1045, 1054
KflI GGGWCCC 1 cut(s) 563
Kpn2I TCCGGA 1 cut(s) 95
KroI GCCGGC 2 cut(s) 197, 858
KroNI GCCGGC 2 cut(s) 199, 860
Ksp22I TGATCA 1 cut(s) 636
Kzo9I GATC 3 cut(s) 3, 594, 636
LmnI GCTCC 7 cut(s) 39, 171, 178, 457, 518, 664, 712
Lsp1109I GCAGC 6 cut(s) 112, 436, 489, 758, 871, 1044
LweI GCATC 1 cut(s) 1044
MaeII ACGT 2 cut(s) 87, 469
MaeIII GTNAC 2 cut(s) 413, 547
MalI GATC 3 cut(s) 5, 596, 638
MbiI CCGCTC 1 cut(s) 513
MboI GATC 3 cut(s) 3, 594, 636
MboII GAAGA 5 cut(s) 257, 682, 685, 688, 691
MfeI CAATTG 1 cut(s) 257
MflI RGATCY 1 cut(s) 594
MhlI GDGCHC 3 cut(s) 107, 231, 475
MluCI AATT 6 cut(s) 257, 378, 519, 613, 727, 919
MlyI GAGTC 3 cut(s) 101, 320, 632
MmeI TCCRAC 1 cut(s) 237
MroI TCCGGA 1 cut(s) 95
MroNI GCCGGC 2 cut(s) 197, 858
MroXI GAANNNNTTC 1 cut(s) 1014
MseI TTAA 1 cut(s) 132
MslI CAYNNNNRTG 2 cut(s) 790, 1040
MspI CCGG 9 cut(s) 96, 159, 170, 198, 443, 494, 732, 859, 877
MspR9I CCNGG 6 cut(s) 170, 438, 456, 494, 569, 704
MunI CAATTG 1 cut(s) 257
MvaI CCWGG 4 cut(s) 438, 456, 569, 704
MwoI GCNNNNNNNGC 2 cut(s) 834, 843
NaeI GCCGGC 2 cut(s) 199, 860
NciI CCSGG 2 cut(s) 170, 494
NcoI CCATGG 1 cut(s) 1041
NdeII GATC 3 cut(s) 3, 594, 636
NgoMIV GCCGGC 2 cut(s) 197, 858
NlaIII CATG 2 cut(s) 1045, 1054
NlaIV GGNNCC 7 cut(s) 105, 106, 174, 564, 565, 708, 813
NmeAIII GCCGAG 1 cut(s) 250
NmuCI GTSAC 1 cut(s) 413
NspI RCATGY 1 cut(s) 1054
OliI CACNNNNGTG 1 cut(s) 790
PciI ACATGT 1 cut(s) 1050
PcsI WCGNNNNNNNCGW 4 cut(s) 66, 87, 481, 1005
PdiI GCCGGC 2 cut(s) 199, 860
PdmI GAANNNNTTC 1 cut(s) 1014
PfeI GAWTC 3 cut(s) 287, 605, 721
PflFI GACNNNGTC 1 cut(s) 86
PfoI TCCNGGA 1 cut(s) 436
PinAI ACCGGT 1 cut(s) 442
PkrI GCNGC 7 cut(s) 127, 451, 479, 748, 839, 886, 1034
PleI GAGTC 3 cut(s) 100, 320, 631
PpsI GAGTC 3 cut(s) 100, 320, 631
PpuMI RGGWCCY 1 cut(s) 563
PscI ACATGT 1 cut(s) 1050
Psp124BI GAGCTC 1 cut(s) 231
Psp5II RGGWCCY 1 cut(s) 563
Psp6I CCWGG 4 cut(s) 436, 454, 567, 702
PspGI CCWGG 4 cut(s) 436, 454, 567, 702
PspN4I GGNNCC 7 cut(s) 105, 106, 174, 564, 565, 708, 813
PspOMI GGGCCC 1 cut(s) 103
PspPI GGNCC 9 cut(s) 8, 103, 104, 147, 440, 563, 734, 803, 812
PspPPI RGGWCCY 1 cut(s) 563
PsuI RGATCY 1 cut(s) 594
PsyI GACNNNGTC 1 cut(s) 86
RsaI GTAC 1 cut(s) 875
RsaNI GTAC 1 cut(s) 874
RseI CAYNNNNRTG 2 cut(s) 790, 1040
Rsr2I CGGWCCG 1 cut(s) 8
RsrII CGGWCCG 1 cut(s) 8
SacI GAGCTC 1 cut(s) 231
SaqAI TTAA 1 cut(s) 132
SatI GCNGC 7 cut(s) 126, 450, 478, 747, 838, 885, 1033
Sau3AI GATC 3 cut(s) 3, 594, 636
Sau96I GGNCC 9 cut(s) 8, 103, 104, 147, 440, 563, 734, 803, 812
SchI GAGTC 3 cut(s) 101, 320, 632
ScrFI CCNGG 6 cut(s) 170, 438, 456, 494, 569, 704
SduI GDGCHC 3 cut(s) 107, 231, 475
SfaNI GCATC 1 cut(s) 1044
SinI GGWCC 5 cut(s) 8, 440, 563, 734, 812
SmiMI CAYNNNNRTG 2 cut(s) 790, 1040
SmlI CTYRAG 2 cut(s) 686, 938
SmoI CTYRAG 2 cut(s) 686, 938
Sse9I AATT 6 cut(s) 257, 378, 519, 613, 727, 919
SsiI CCGC 8 cut(s) 36, 108, 207, 355, 511, 516, 837, 844
SstI GAGCTC 1 cut(s) 231
StyD4I CCNGG 6 cut(s) 168, 436, 454, 492, 567, 702
StyI CCWWGG 2 cut(s) 951, 1041
TaiI ACGT 2 cut(s) 90, 472
TaqI TCGA 5 cut(s) 21, 69, 90, 272, 714
TaqII GACCGA 1 cut(s) 25
TasI AATT 6 cut(s) 257, 378, 519, 613, 727, 919
TauI GCSGC 1 cut(s) 840
TfiI GAWTC 3 cut(s) 287, 605, 721
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TscAI CASTG 2 cut(s) 756, 797
TseFI GTSAC 1 cut(s) 413
TseI GCWGC 6 cut(s) 125, 449, 477, 746, 884, 1032
Tsp45I GTSAC 1 cut(s) 413
TspDTI ATGAA 3 cut(s) 7, 322, 1010
TspGWI ACGGA 1 cut(s) 223
TspRI CASTG 2 cut(s) 756, 797
Tth111I GACNNNGTC 1 cut(s) 86
VpaK11BI GGWCC 5 cut(s) 8, 440, 563, 734, 812
XapI RAATTY 2 cut(s) 613, 727
XceI RCATGY 1 cut(s) 1054
XmnI GAANNNNTTC 1 cut(s) 1014
ZraI GACGTC 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.