Rmu_sc0001770.1_g000004

Transcriptional activator that specifically binds 5'- GATA-3' or 5'-GAT-3' motifs within gene promoters

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001770.1
Physical Location & Seq
Forward (+)
28781 .. 31856
3076 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001770.1_g000004.1.cds

Sequence Viewer

Length: 1149 bp
atgagctctcctgatatgaaaaactctcagcaaaattctggccgagaagaggcgggagagtcttggttcatccactggttcatttcccaaacctcacaggacaaaatgatcacacccaacttcgtcgacgagattgactgcggaagcttcttcgataacatcgacgacctcatggaggacgtcgactccgtcctcggccccgcccccgactgcaactccgccttcccttcctccctctccctctgggacggccactccgccgccgcagcgcctctcccccctcccgacgccgccgtcttctccggcaacggcgactccgacttctcctccgagctcccggttccgtatgaagagatggttcatttggaatggctgtccaactttgttgagaattccgagtactatggcggaaacctcaccatcaacaagcaacaggagtcttccctggtcaacaaggagtcttcccaccaacagttccatacctccagccccatttctgtgcttgacagcagcagctcctgctcgggcgagaagaatgtgcttgaaggatcgattgctcctggaaggcgcggacgtgctagaagcaagcgtccacgccctgccaccttcaaccctcgctcggcaattcaactgatttcccctgcttcctctgtttcggagattgacaaccctctgcagcagcattcgttgtttgcccctaaggtgttttcggactctgagaactttgcagagtctcgtcctgcagtgaagatgcccaaacaagcttccggggagcagaagaagaagaagagaatcaagttgccccctccccctaaggttccaggggagctgaatgaggataccccagtgcagggatcagtcaggaagtgcttgcattgtgagattaccaagacaccccagtggagggcaggcccaatggggccaaaaaccctttgcaatgcctgtggagtgcgctacaagtcaggcaggctcttccctgagtaccgtcctgcagctagtccaacttttgttccggccttgcactccaattcccacaagaaggttatcgagatgagaaccaagggtggcgagatggctgctgttcccgataacagcatcccagaactcattccgaataacaacagcagcatttcgctggattacatgtga

Protein Analysis

382

Amino Acids

41.82

Weight (kDa)

5.66

Isoelectric Point (pI)

65.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012520)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 293
AatII GACGTC 1 cut(s) 183
AccI GTMKAC 2 cut(s) 126, 183
AccII CGCG 1 cut(s) 570
AclWI GGATC 2 cut(s) 556, 862
AcoI YGGCCR 2 cut(s) 40, 250
AcsI RAATTY 2 cut(s) 34, 391
AcyI GRCGYC 2 cut(s) 180, 288
AfaI GTAC 2 cut(s) 401, 983
AfiI CCNNNNNNNGG 8 cut(s) 49, 175, 619, 850, 851, 903, 904, 1039
AflIII ACRYGT 1 cut(s) 1143
AgsI TTSAA 3 cut(s) 545, 610, 629
AjiI CACGTC 1 cut(s) 575
AjnI CCWGG 3 cut(s) 444, 559, 820
AleI CACNNNNGTG 1 cut(s) 898
AluBI AGCT 7 cut(s) 6, 147, 334, 516, 764, 829, 995
AluI AGCT 7 cut(s) 6, 147, 334, 516, 764, 829, 995
Alw21I GWGCWC 2 cut(s) 8, 336
Alw26I GTCTC 1 cut(s) 738
AlwI GGATC 2 cut(s) 556, 862
AlwNI CAGNNNCTG 1 cut(s) 519
Ama87I CYCGRG 1 cut(s) 523
AoxI GGCC 6 cut(s) 40, 196, 250, 910, 920, 1014
ApeKI GCWGC 8 cut(s) 266, 510, 513, 676, 679, 992, 1076, 1125
ApoI RAATTY 2 cut(s) 34, 391
Asp700I GAANNNNTTC 1 cut(s) 1107
AspLEI GCGC 3 cut(s) 271, 570, 954
AspS9I GGNCC 3 cut(s) 197, 911, 920
AsuC2I CCSGG 2 cut(s) 338, 769
AsuHPI GGTGA 1 cut(s) 409
AvaI CYCGRG 1 cut(s) 523
AxyI CCTNAGG 2 cut(s) 699, 813
BaeI ACNNNNGTAYC 2 cut(s) 831, 864
BanII GRGCYC 2 cut(s) 8, 336
BbsI GAAGAC 3 cut(s) 289, 432, 453
Bbv12I GWGCWC 2 cut(s) 8, 336
BbvI GCAGC 8 cut(s) 278, 522, 525, 688, 691, 1004, 1063, 1137
BccI CCATC 3 cut(s) 349, 428, 1066
BceAI ACGGC 3 cut(s) 265, 278, 325
BcgI CGANNNNNNTGC 2 cut(s) 1058, 1092
BciT130I CCWGG 3 cut(s) 446, 561, 822
BciVI GTATCC 1 cut(s) 832
BclI TGATCA 1 cut(s) 108
BcnI CCSGG 2 cut(s) 338, 769
BcoDI GTCTC 1 cut(s) 738
BfaI CTAG 2 cut(s) 579, 996
BfmI CTRYAG 3 cut(s) 674, 741, 990
BfoI RGCGCY 1 cut(s) 272
BfuI GTATCC 1 cut(s) 832
BmcAI AGTACT 1 cut(s) 401
Bme1390I CCNGG 5 cut(s) 338, 446, 561, 769, 822
BmeT110I CYCGRG 1 cut(s) 523
BmgBI CACGTC 1 cut(s) 575
BmgT120I GGNCC 3 cut(s) 197, 911, 920
BmiI GGNNCC 4 cut(s) 199, 342, 819, 921
BmrFI CCNGG 5 cut(s) 338, 446, 561, 769, 822
BmrI ACTGGG 2 cut(s) 839, 892
BmsI GCATC 2 cut(s) 741, 1104
BmuI ACTGGG 2 cut(s) 839, 892
BpiI GAAGAC 3 cut(s) 289, 432, 453
BpmI CTGGAG 1 cut(s) 469
BpuMI CCSGG 2 cut(s) 338, 769
Bsa29I ATCGAT 1 cut(s) 551
BsaHI GRCGYC 2 cut(s) 180, 288
BsaJI CCNNGG 5 cut(s) 193, 444, 768, 821, 1059
Bsc4I CCNNNNNNNGG 8 cut(s) 49, 175, 619, 850, 851, 903, 904, 1039
Bse1I ACTGG 3 cut(s) 80, 845, 898
Bse21I CCTNAGG 2 cut(s) 699, 813
Bse3DI GCAATG 1 cut(s) 943
BseBI CCWGG 3 cut(s) 446, 561, 822
BseCI ATCGAT 1 cut(s) 551
BseDI CCNNGG 5 cut(s) 193, 444, 768, 821, 1059
BseGI GGATG 2 cut(s) 69, 1095
BseLI CCNNNNNNNGG 8 cut(s) 49, 175, 619, 850, 851, 903, 904, 1039
BseMI GCAATG 1 cut(s) 943
BseMII CTCAG 3 cut(s) 41, 708, 969
BseNI ACTGG 3 cut(s) 80, 845, 898
BseRI GAGGAG 1 cut(s) 316
BseXI GCAGC 8 cut(s) 278, 522, 525, 688, 691, 1004, 1063, 1137
BsgI GTGCAG 1 cut(s) 869
Bsh1236I CGCG 1 cut(s) 570
BshFI GGCC 6 cut(s) 42, 198, 252, 912, 922, 1016
BshVI ATCGAT 1 cut(s) 551
BsiHKAI GWGCWC 2 cut(s) 8, 336
BsiHKCI CYCGRG 1 cut(s) 523
BsiSI CCGG 4 cut(s) 303, 338, 768, 1013
BslFI GGGAC 1 cut(s) 260
BslI CCNNNNNNNGG 8 cut(s) 49, 175, 619, 850, 851, 903, 904, 1039
BsmAI GTCTC 1 cut(s) 738
BsmFI GGGAC 1 cut(s) 260
BsmI GAATGC 1 cut(s) 682
BsnI GGCC 6 cut(s) 42, 198, 252, 912, 922, 1016
BsoBI CYCGRG 1 cut(s) 523
Bsp1286I GDGCHC 2 cut(s) 8, 336
Bsp143I GATC 3 cut(s) 108, 548, 854
BspANI GGCC 6 cut(s) 42, 198, 252, 912, 922, 1016
BspCNI CTCAG 3 cut(s) 40, 709, 970
BspDI ATCGAT 1 cut(s) 551
BspFNI CGCG 1 cut(s) 570
BspLI GGNNCC 4 cut(s) 199, 342, 819, 921
BspMAI CTGCAG 3 cut(s) 678, 745, 994
BspPI GGATC 2 cut(s) 556, 862
BspQI GCTCTTC 1 cut(s) 977
BsrDI GCAATG 1 cut(s) 943
BsrI ACTGG 3 cut(s) 80, 845, 898
BssECI CCNNGG 5 cut(s) 193, 444, 768, 821, 1059
BssMI GATC 3 cut(s) 108, 548, 854
BssNI GRCGYC 2 cut(s) 180, 288
BssT1I CCWWGG 1 cut(s) 1059
Bst2UI CCWGG 3 cut(s) 446, 561, 822
Bst4CI ACNGT 2 cut(s) 474, 986
Bst6I CTCTTC 4 cut(s) 42, 345, 782, 977
BstACI GRCGYC 2 cut(s) 180, 288
BstAPI GCANNNNNTGC 1 cut(s) 519
BstC8I GCNNGC 4 cut(s) 587, 872, 910, 968
BstDEI CTNAG 5 cut(s) 27, 699, 717, 813, 978
BstENI CCTNNNNNAGG 1 cut(s) 173
BstF5I GGATG 2 cut(s) 69, 1095
BstFNI CGCG 1 cut(s) 570
BstH2I RGCGCY 1 cut(s) 272
BstHHI GCGC 3 cut(s) 271, 570, 954
BstKTI GATC 3 cut(s) 111, 551, 857
BstMAI GTCTC 1 cut(s) 738
BstMBI GATC 3 cut(s) 108, 548, 854
BstMWI GCNNNNNNNGC 2 cut(s) 266, 519
BstNI CCWGG 3 cut(s) 446, 561, 822
BstNSI RCATGY 1 cut(s) 1147
BstSCI CCNGG 5 cut(s) 336, 444, 559, 767, 820
BstSFI CTRYAG 3 cut(s) 674, 741, 990
BstUI CGCG 1 cut(s) 570
BstV1I GCAGC 8 cut(s) 278, 522, 525, 688, 691, 1004, 1063, 1137
BstV2I GAAGAC 3 cut(s) 289, 432, 453
Bsu15I ATCGAT 1 cut(s) 551
Bsu36I CCTNAGG 2 cut(s) 699, 813
BsuI GTATCC 1 cut(s) 832
BsuRI GGCC 6 cut(s) 42, 198, 252, 912, 922, 1016
BsuTUI ATCGAT 1 cut(s) 551
BtrI CACGTC 1 cut(s) 575
BtsCI GGATG 2 cut(s) 69, 1095
BtsI GCAGTG 1 cut(s) 750
BtsIMutI CAGTG 4 cut(s) 73, 750, 852, 905
Cac8I GCNNGC 4 cut(s) 587, 872, 910, 968
CaiI CAGNNNCTG 1 cut(s) 519
CfoI GCGC 3 cut(s) 271, 570, 954
Cfr13I GGNCC 3 cut(s) 197, 911, 920
ClaI ATCGAT 1 cut(s) 551
CseI GACGC 2 cut(s) 296, 578
Csp6I GTAC 2 cut(s) 400, 982
CspCI CAANNNNNGTGG 2 cut(s) 925, 960
CviAII CATG 2 cut(s) 172, 1144
CviQI GTAC 2 cut(s) 400, 982
DdeI CTNAG 5 cut(s) 27, 699, 717, 813, 978
DpnI GATC 3 cut(s) 110, 550, 856
DpnII GATC 3 cut(s) 108, 548, 854
DrdI GACNNNNNNGTC 1 cut(s) 293
DseDI GACNNNNNNGTC 1 cut(s) 293
EaeI YGGCCR 2 cut(s) 40, 250
Eam1104I CTCTTC 4 cut(s) 42, 345, 782, 977
EarI CTCTTC 4 cut(s) 42, 345, 782, 977
EciI GGCGGA 3 cut(s) 208, 247, 423
Ecl136II GAGCTC 2 cut(s) 6, 334
Eco130I CCWWGG 1 cut(s) 1059
Eco24I GRGCYC 2 cut(s) 8, 336
Eco53kI GAGCTC 2 cut(s) 6, 334
Eco81I CCTNAGG 2 cut(s) 699, 813
Eco88I CYCGRG 1 cut(s) 523
EcoICRI GAGCTC 2 cut(s) 6, 334
EcoNI CCTNNNNNAGG 1 cut(s) 173
EcoRI GAATTC 1 cut(s) 391
EcoRII CCWGG 3 cut(s) 444, 559, 820
EcoT14I CCWWGG 1 cut(s) 1059
EcoT38I GRGCYC 2 cut(s) 8, 336
ErhI CCWWGG 1 cut(s) 1059
FaeI CATG 2 cut(s) 175, 1147
FaiI YATR 6 cut(s) 17, 173, 348, 405, 480, 1145
FaqI GGGAC 1 cut(s) 260
FatI CATG 2 cut(s) 171, 1143
FauI CCCGC 2 cut(s) 46, 208
FbaI TGATCA 1 cut(s) 108
FblI GTMKAC 2 cut(s) 126, 183
FokI GGATG 2 cut(s) 56, 1082
FriOI GRGCYC 2 cut(s) 8, 336
FspBI CTAG 2 cut(s) 579, 996
GlaI GCGC 3 cut(s) 270, 569, 953
GsuI CTGGAG 1 cut(s) 469
HaeII RGCGCY 1 cut(s) 272
HaeIII GGCC 6 cut(s) 42, 198, 252, 912, 922, 1016
HapII CCGG 4 cut(s) 303, 338, 768, 1013
HgaI GACGC 2 cut(s) 296, 578
HhaI GCGC 3 cut(s) 271, 570, 954
Hin1I GRCGYC 2 cut(s) 180, 288
Hin1II CATG 2 cut(s) 175, 1147
Hin6I GCGC 3 cut(s) 269, 568, 952
HinP1I GCGC 3 cut(s) 269, 568, 952
HincII GTYRAC 3 cut(s) 127, 184, 451
HindII GTYRAC 3 cut(s) 127, 184, 451
HindIII AAGCTT 2 cut(s) 145, 762
HinfI GANTC 8 cut(s) 59, 185, 314, 437, 458, 713, 731, 792
HpaII CCGG 4 cut(s) 303, 338, 768, 1013
HphI GGTGA 1 cut(s) 409
Hpy166II GTNNAC 4 cut(s) 127, 184, 451, 593
Hpy188I TCNGA 7 cut(s) 319, 331, 397, 658, 712, 718, 1113
Hpy188III TCNNGA 5 cut(s) 11, 284, 862, 1048, 1085
Hpy8I GTNNAC 4 cut(s) 127, 184, 451, 593
Hpy99I CGWCG 5 cut(s) 128, 131, 167, 185, 290
HpyAV CCTTC 6 cut(s) 232, 237, 539, 558, 616, 1033
HpyCH4III ACNGT 2 cut(s) 474, 986
HpyCH4IV ACGT 2 cut(s) 180, 574
HpyCH4V TGCA 9 cut(s) 213, 676, 728, 743, 850, 874, 936, 992, 1021
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 519
HpyF3I CTNAG 5 cut(s) 27, 699, 717, 813, 978
HpySE526I ACGT 2 cut(s) 180, 574
Hsp92I GRCGYC 2 cut(s) 180, 288
Hsp92II CATG 2 cut(s) 175, 1147
HspAI GCGC 3 cut(s) 269, 568, 952
Ksp22I TGATCA 1 cut(s) 108
Kzo9I GATC 3 cut(s) 108, 548, 854
LguI GCTCTTC 1 cut(s) 977
LmnI GCTCC 5 cut(s) 339, 521, 562, 772, 826
Lsp1109I GCAGC 8 cut(s) 278, 522, 525, 688, 691, 1004, 1063, 1137
LweI GCATC 2 cut(s) 741, 1104
MaeI CTAG 2 cut(s) 579, 996
MaeII ACGT 2 cut(s) 180, 574
MalI GATC 3 cut(s) 110, 550, 856
MboI GATC 3 cut(s) 108, 548, 854
MhlI GDGCHC 2 cut(s) 8, 336
MluCI AATT 4 cut(s) 34, 391, 624, 1027
MlyI GAGTC 7 cut(s) 68, 179, 308, 446, 467, 707, 740
MmeI TCCRAC 3 cut(s) 342, 402, 1025
MroXI GAANNNNTTC 1 cut(s) 1107
MslI CAYNNNNRTG 2 cut(s) 497, 898
MspI CCGG 4 cut(s) 303, 338, 768, 1013
MspR9I CCNGG 5 cut(s) 338, 446, 561, 769, 822
Mva1269I GAATGC 1 cut(s) 682
MvaI CCWGG 3 cut(s) 446, 561, 822
MvnI CGCG 1 cut(s) 570
MwoI GCNNNNNNNGC 2 cut(s) 266, 519
NciI CCSGG 2 cut(s) 338, 769
NdeII GATC 3 cut(s) 108, 548, 854
NlaIII CATG 2 cut(s) 175, 1147
NlaIV GGNNCC 4 cut(s) 199, 342, 819, 921
NmeAIII GCCGAG 3 cut(s) 68, 174, 599
NspI RCATGY 1 cut(s) 1147
OliI CACNNNNGTG 1 cut(s) 898
PciI ACATGT 1 cut(s) 1143
PciSI GCTCTTC 1 cut(s) 977
PcsI WCGNNNNNNNCGW 3 cut(s) 159, 186, 315
PctI GAATGC 1 cut(s) 682
PdmI GAANNNNTTC 1 cut(s) 1107
PfeI GAWTC 1 cut(s) 792
PflFI GACNNNGTC 1 cut(s) 188
PfoI TCCNGGA 1 cut(s) 559
PleI GAGTC 7 cut(s) 67, 179, 308, 445, 466, 707, 739
PpsI GAGTC 7 cut(s) 67, 179, 308, 445, 466, 707, 739
PscI ACATGT 1 cut(s) 1143
Psp124BI GAGCTC 2 cut(s) 8, 336
Psp6I CCWGG 3 cut(s) 444, 559, 820
PspGI CCWGG 3 cut(s) 444, 559, 820
PspN4I GGNNCC 4 cut(s) 199, 342, 819, 921
PspPI GGNCC 3 cut(s) 197, 911, 920
PstI CTGCAG 3 cut(s) 678, 745, 994
PstNI CAGNNNCTG 1 cut(s) 519
PsyI GACNNNGTC 1 cut(s) 188
RsaI GTAC 2 cut(s) 401, 983
RsaNI GTAC 2 cut(s) 400, 982
RseI CAYNNNNRTG 2 cut(s) 497, 898
SacI GAGCTC 2 cut(s) 8, 336
SalI GTCGAC 2 cut(s) 125, 182
SapI GCTCTTC 1 cut(s) 977
Sau3AI GATC 3 cut(s) 108, 548, 854
Sau96I GGNCC 3 cut(s) 197, 911, 920
ScaI AGTACT 1 cut(s) 401
SchI GAGTC 7 cut(s) 68, 179, 308, 446, 467, 707, 740
ScrFI CCNGG 5 cut(s) 338, 446, 561, 769, 822
SduI GDGCHC 2 cut(s) 8, 336
SfaNI GCATC 2 cut(s) 741, 1104
SfcI CTRYAG 3 cut(s) 674, 741, 990
SgrDI CGTCGACG 1 cut(s) 125
SmiMI CAYNNNNRTG 2 cut(s) 497, 898
Sse9I AATT 4 cut(s) 34, 391, 624, 1027
SspMI CTAG 2 cut(s) 579, 996
SstI GAGCTC 2 cut(s) 8, 336
StyD4I CCNGG 5 cut(s) 336, 444, 559, 767, 820
StyI CCWWGG 1 cut(s) 1059
TaaI ACNGT 2 cut(s) 474, 986
TaiI ACGT 2 cut(s) 183, 577
TaqI TCGA 6 cut(s) 126, 153, 162, 183, 551, 1047
TasI AATT 4 cut(s) 34, 391, 624, 1027
TatI WGTACW 1 cut(s) 399
TauI GCSGC 3 cut(s) 263, 266, 293
TfiI GAWTC 1 cut(s) 792
TscAI CASTG 4 cut(s) 80, 750, 852, 905
TseI GCWGC 8 cut(s) 266, 510, 513, 676, 679, 992, 1076, 1125
TspDTI ATGAA 5 cut(s) 32, 58, 70, 350, 363
TspGWI ACGGA 2 cut(s) 178, 333
TspRI CASTG 4 cut(s) 80, 750, 852, 905
Tth111I GACNNNGTC 1 cut(s) 188
XagI CCTNNNNNAGG 1 cut(s) 173
XapI RAATTY 2 cut(s) 34, 391
XceI RCATGY 1 cut(s) 1147
XmiI GTMKAC 2 cut(s) 126, 183
XmnI GAANNNNTTC 1 cut(s) 1107
XspI CTAG 2 cut(s) 579, 996
ZraI GACGTC 1 cut(s) 181
ZrmI AGTACT 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.