Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005097

Physical Location & Seq

Genomic Coordinates Reverse (-)

20595126 .. 20597603

Gene Structure 2478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G55530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGAGCTTTGTTTTCCGGGGAAGTAGAGGAGATTTAGAAAGCGGATTCTCGGGTGGTTTTCTACCCGAAAGACGAGCTATGCGTGTTCATGGAGCTCGACCAGTTAATTCTAATTCCCTCGCTTTTCTGGTTACAGTTCTTTTGCTGTTTATGATTCTCAATTCGCATCAGATGCCTCCTAATTTCCTGCTGTGGCTTGTGCTTGGGGTGTTTTTGATGGCAACGACGCTTAGGATGTATGCTACTTGCCAACAACTTCAAGCTCATGCTCAGGCTCAGGCTGCAGCAGCAAGTGGCCTCTTTAGCCATACTGAGCTGAGGTTGCATGTGCCTCCTTCCATTGCTCTTGCTACGAGAGGGCGTCTTCAGGGACTTAGGCTCCAGCTGGCTCTTCTTGATCGGGAATTTGATGACTTAGATTATGAAACTTTAAGAGCACTTGATTCTGATAATGTTTCCACAACTTCTATGAGCGAGGAAGAGATAAATGCACTTCCAGTTCACAAGTACAAGGTGTTGGATCCTGAAAATGGTTGCTCTTTGGCAAAGCAAGCGTCAACCTCATCCTCAGCTGAGAAGATGCTAGATTCTGCCAATGAAAGTAAAAAAGGAACAGAAGATGAGCTCACATGTAGTGTTTGCCTAGAACAAGTTACCGTAGGGGAAATCGTTCGCACCTTACCTTGTTTGCATCAGTTTCATGCAGGATGTATCGATCCATGGTTGAGACAGCAAGGAACATGTCCTGTCTGTAAATTTAGAGCTCATTCAGGATGGCAAGAACAAGATGAGATTGATGATGATGCTTCCGACATGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010498 GO:0010646 GO:0010647 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0031984 GO:0032446 GO:0033993 GO:0036211 GO:0042175 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:0098827 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

273

Amino Acids

30.18

Weight (kDa)

5.34

Isoelectric Point (pI)

52.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	210 - 252	4e-14	Ring finger domain
zf-RING_11	PF17123	211 - 238	8.5e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	211 - 251	2.3e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	211 - 251	3.1e-08	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	226 - 252	3.3e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55530
fragaria_vesca	FvH4_7g22830 FvH4_7g22830
malus_domestica	MD01G1136500.v1.1 MD07G1201500.v1.1 MD11G1096300.v1.1
prunus_persica	Prupe.2G238100_v2.0.a1 Prupe.2G238100_v2.0.a1 Prupe.2G238100_v2.0.a1 Prupe.2G238100_v2.0.a1 Prupe.2G238100_v2.0.a1 Prupe.6G071900_v2.0.a1 Prupe.6G071900_v2.0.a1 Prupe.6G071900_v2.0.a1
pyrus_communis	pycom01g15720 pycom07g18850 pycom11g08160
rosa_chinensis	RchiOBHm_Chr1g0367981
rosa_laevigata	RLG00000027249
rosa_multiflora	Rmu_co8208940.1_g000001
rosa_roxburghii	Rroxscaffold_4G00288980
rosa_rugosa	Rorug01G0338200 Rorug01G0338200 Rorug01G0338200 Rorug01G0338300
rosa_samantha	Rh1AG345000 Rh1BG307200 Rh1CG322800 Rh1DG339300
rosa_wichuraiana	Rw1G030700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	42
AclWI	GGATC	3 cut(s)	515, 528, 710
AcsI	RAATTY	2 cut(s)	404, 755
AcuI	CTGAAG	1 cut(s)	350
AcyI	GRCGYC	1 cut(s)	361
AfaI	GTAC	1 cut(s)	509
AfiI	CCNNNNNNNGG	1 cut(s)	530
AflIII	ACRYGT	2 cut(s)	629, 740
AgsI	TTSAA	1 cut(s)	260
AluBI	AGCT	9 cut(s)	6, 77, 95, 263, 316, 385, 572, 625, 764
AluI	AGCT	9 cut(s)	6, 77, 95, 263, 316, 385, 572, 625, 764
Alw21I	GWGCWC	4 cut(s)	97, 439, 627, 766
Alw26I	GTCTC	1 cut(s)	721
AlwI	GGATC	3 cut(s)	515, 528, 710
Ama87I	CYCGRG	1 cut(s)	49
AoxI	GGCC	1 cut(s)	295
ApeKI	GCWGC	3 cut(s)	281, 284, 287
ApoI	RAATTY	2 cut(s)	404, 755
ArsI	GACNNNNNNTTYG	2 cut(s)	539, 571
Asp700I	GAANNNNTTC	1 cut(s)	669
AsuC2I	CCSGG	1 cut(s)	17
AvaI	CYCGRG	1 cut(s)	49
BamHI	GGATCC	1 cut(s)	520
BanII	GRGCYC	3 cut(s)	97, 627, 766
BbsI	GAAGAC	1 cut(s)	356
Bbv12I	GWGCWC	4 cut(s)	97, 439, 627, 766
BbvCI	CCTCAGC	2 cut(s)	317, 568
BbvI	GCAGC	3 cut(s)	268, 296, 299
BccI	CCATC	2 cut(s)	211, 768
BcnI	CCSGG	1 cut(s)	17
BcoDI	GTCTC	1 cut(s)	721
BfaI	CTAG	2 cut(s)	584, 644
BfmI	CTRYAG	1 cut(s)	282
BisI	GCNGC	3 cut(s)	282, 285, 288
BlsI	GCNGC	3 cut(s)	283, 286, 289
Bme1390I	CCNGG	1 cut(s)	17
BmeT110I	CYCGRG	1 cut(s)	49
BmiI	GGNNCC	2 cut(s)	380, 522
BmrFI	CCNGG	1 cut(s)	17
BmsI	GCATC	5 cut(s)	162, 175, 570, 700, 793
BpiI	GAAGAC	1 cut(s)	356
BpmI	CTGGAG	1 cut(s)	365
Bpu10I	CCTNAGC	5 cut(s)	230, 270, 276, 317, 568
BpuMI	CCSGG	1 cut(s)	17
Bsa29I	ATCGAT	1 cut(s)	714
BsaHI	GRCGYC	1 cut(s)	361
BsaJI	CCNNGG	2 cut(s)	16, 719
BsaXI	ACNNNNNCTCC	2 cut(s)	363, 393
Bsc4I	CCNNNNNNNGG	1 cut(s)	530
Bse1I	ACTGG	2 cut(s)	101, 497
Bse3DI	GCAATG	1 cut(s)	339
BseCI	ATCGAT	1 cut(s)	714
BseDI	CCNNGG	2 cut(s)	16, 719
BseGI	GGATG	4 cut(s)	240, 563, 713, 779
BseLI	CCNNNNNNNGG	1 cut(s)	530
BseMI	GCAATG	1 cut(s)	339
BseMII	CTCAG	6 cut(s)	284, 290, 303, 308, 564, 582
BseNI	ACTGG	2 cut(s)	101, 497
BseRI	GAGGAG	1 cut(s)	42
BseXI	GCAGC	3 cut(s)	268, 296, 299
BshFI	GGCC	1 cut(s)	297
BshVI	ATCGAT	1 cut(s)	714
BsiHKAI	GWGCWC	4 cut(s)	97, 439, 627, 766
BsiHKCI	CYCGRG	1 cut(s)	49
BsiSI	CCGG	1 cut(s)	16
BslFI	GGGAC	1 cut(s)	384
BslI	CCNNNNNNNGG	1 cut(s)	530
BsmAI	GTCTC	1 cut(s)	721
BsmFI	GGGAC	1 cut(s)	384
BsnI	GGCC	1 cut(s)	297
BsoBI	CYCGRG	1 cut(s)	49
Bsp1286I	GDGCHC	4 cut(s)	97, 439, 627, 766
Bsp143I	GATC	3 cut(s)	397, 520, 715
Bsp19I	CCATGG	1 cut(s)	719
BspACI	CCGC	1 cut(s)	42
BspANI	GGCC	1 cut(s)	297
BspCNI	CTCAG	6 cut(s)	283, 289, 304, 309, 565, 581
BspDI	ATCGAT	1 cut(s)	714
BspLI	GGNNCC	2 cut(s)	380, 522
BspMAI	CTGCAG	1 cut(s)	286
BspPI	GGATC	3 cut(s)	515, 528, 710
BspQI	GCTCTTC	1 cut(s)	396
BsrDI	GCAATG	1 cut(s)	339
BsrI	ACTGG	2 cut(s)	101, 497
BssECI	CCNNGG	2 cut(s)	16, 719
BssMI	GATC	3 cut(s)	397, 520, 715
BssNI	GRCGYC	1 cut(s)	361
BssT1I	CCWWGG	1 cut(s)	719
Bst4CI	ACNGT	2 cut(s)	136, 658
Bst6I	CTCTTC	2 cut(s)	396, 474
BstACI	GRCGYC	1 cut(s)	361
BstAPI	GCANNNNNTGC	1 cut(s)	172
BstC8I	GCNNGC	2 cut(s)	387, 552
BstDEI	CTNAG	9 cut(s)	230, 270, 276, 312, 317, 374, 415, 568, 573
BstDSI	CCRYGG	1 cut(s)	719
BstF5I	GGATG	4 cut(s)	240, 563, 713, 779
BstKTI	GATC	3 cut(s)	400, 523, 718
BstMAI	GTCTC	1 cut(s)	721
BstMBI	GATC	3 cut(s)	397, 520, 715
BstMWI	GCNNNNNNNGC	6 cut(s)	172, 281, 287, 303, 322, 551
BstNSI	RCATGY	3 cut(s)	329, 633, 744
BstSCI	CCNGG	1 cut(s)	15
BstSFI	CTRYAG	1 cut(s)	282
BstV1I	GCAGC	3 cut(s)	268, 296, 299
BstV2I	GAAGAC	1 cut(s)	356
BstX2I	RGATCY	1 cut(s)	520
BstYI	RGATCY	1 cut(s)	520
Bsu15I	ATCGAT	1 cut(s)	714
BsuRI	GGCC	1 cut(s)	297
BsuTUI	ATCGAT	1 cut(s)	714
BtgI	CCRYGG	1 cut(s)	719
BtsCI	GGATG	4 cut(s)	240, 563, 713, 779
Cac8I	GCNNGC	2 cut(s)	387, 552
ClaI	ATCGAT	1 cut(s)	714
CseI	GACGC	3 cut(s)	235, 350, 543
Csp6I	GTAC	1 cut(s)	508
CviAII	CATG	8 cut(s)	89, 266, 326, 630, 701, 720, 741, 814
CviQI	GTAC	1 cut(s)	508
DdeI	CTNAG	9 cut(s)	230, 270, 276, 312, 317, 374, 415, 568, 573
DpnI	GATC	3 cut(s)	399, 522, 717
DpnII	GATC	3 cut(s)	397, 520, 715
Eam1104I	CTCTTC	2 cut(s)	396, 474
EarI	CTCTTC	2 cut(s)	396, 474
Ecl136II	GAGCTC	3 cut(s)	95, 625, 764
Eco130I	CCWWGG	1 cut(s)	719
Eco24I	GRGCYC	3 cut(s)	97, 627, 766
Eco53kI	GAGCTC	3 cut(s)	95, 625, 764
Eco57I	CTGAAG	1 cut(s)	350
Eco88I	CYCGRG	1 cut(s)	49
EcoICRI	GAGCTC	3 cut(s)	95, 625, 764
EcoT14I	CCWWGG	1 cut(s)	719
EcoT38I	GRGCYC	3 cut(s)	97, 627, 766
ErhI	CCWWGG	1 cut(s)	719
FaeI	CATG	8 cut(s)	92, 269, 329, 633, 704, 723, 744, 817
FaqI	GGGAC	1 cut(s)	384
FatI	CATG	8 cut(s)	88, 265, 325, 629, 700, 719, 740, 813
Fnu4HI	GCNGC	3 cut(s)	282, 285, 288
FokI	GGATG	4 cut(s)	247, 550, 720, 786
FriOI	GRGCYC	3 cut(s)	97, 627, 766
Fsp4HI	GCNGC	3 cut(s)	282, 285, 288
FspBI	CTAG	2 cut(s)	584, 644
GluI	GCNGC	3 cut(s)	282, 285, 288
GsuI	CTGGAG	1 cut(s)	365
HaeIII	GGCC	1 cut(s)	297
HapII	CCGG	1 cut(s)	16
HgaI	GACGC	3 cut(s)	235, 350, 543
Hin1I	GRCGYC	1 cut(s)	361
Hin1II	CATG	8 cut(s)	92, 269, 329, 633, 704, 723, 744, 817
HincII	GTYRAC	1 cut(s)	558
HindII	GTYRAC	1 cut(s)	558
HinfI	GANTC	4 cut(s)	45, 154, 443, 587
HpaII	CCGG	1 cut(s)	16
Hpy166II	GTNNAC	2 cut(s)	502, 558
Hpy188I	TCNGA	3 cut(s)	171, 448, 811
Hpy188III	TCNNGA	4 cut(s)	395, 401, 524, 771
Hpy8I	GTNNAC	2 cut(s)	502, 558
Hpy99I	CGWCG	1 cut(s)	229
HpyAV	CCTTC	1 cut(s)	345
HpyCH4III	ACNGT	2 cut(s)	136, 658
HpyCH4V	TGCA	5 cut(s)	284, 325, 491, 691, 704
HpyF10VI	GCNNNNNNNGC	6 cut(s)	172, 281, 287, 303, 322, 551
HpyF3I	CTNAG	9 cut(s)	230, 270, 276, 312, 317, 374, 415, 568, 573
Hsp92I	GRCGYC	1 cut(s)	361
Hsp92II	CATG	8 cut(s)	92, 269, 329, 633, 704, 723, 744, 817
Kzo9I	GATC	3 cut(s)	397, 520, 715
LguI	GCTCTTC	1 cut(s)	396
LmnI	GCTCC	2 cut(s)	92, 384
Lsp1109I	GCAGC	3 cut(s)	268, 296, 299
LweI	GCATC	5 cut(s)	162, 175, 570, 700, 793
MaeI	CTAG	2 cut(s)	584, 644
MaeIII	GTNAC	2 cut(s)	130, 652
MalI	GATC	3 cut(s)	399, 522, 717
MboI	GATC	3 cut(s)	397, 520, 715
MboII	GAAGA	5 cut(s)	356, 383, 491, 589, 629
MflI	RGATCY	1 cut(s)	520
MhlI	GDGCHC	4 cut(s)	97, 439, 627, 766
MluCI	AATT	6 cut(s)	106, 112, 160, 181, 404, 755
MmeI	TCCRAC	1 cut(s)	498
MroXI	GAANNNNTTC	1 cut(s)	669
MseI	TTAA	2 cut(s)	105, 431
MspA1I	CMGCKG	2 cut(s)	385, 572
MspI	CCGG	1 cut(s)	16
MspR9I	CCNGG	1 cut(s)	17
MwoI	GCNNNNNNNGC	6 cut(s)	172, 281, 287, 303, 322, 551
NciI	CCSGG	1 cut(s)	17
NcoI	CCATGG	1 cut(s)	719
NdeII	GATC	3 cut(s)	397, 520, 715
NlaIII	CATG	8 cut(s)	92, 269, 329, 633, 704, 723, 744, 817
NlaIV	GGNNCC	2 cut(s)	380, 522
NspI	RCATGY	3 cut(s)	329, 633, 744
PciI	ACATGT	2 cut(s)	629, 740
PciSI	GCTCTTC	1 cut(s)	396
PcsI	WCGNNNNNNNCGW	1 cut(s)	79
PdmI	GAANNNNTTC	1 cut(s)	669
PfeI	GAWTC	4 cut(s)	45, 154, 443, 587
PkrI	GCNGC	3 cut(s)	283, 286, 289
PscI	ACATGT	2 cut(s)	629, 740
Psp124BI	GAGCTC	3 cut(s)	97, 627, 766
PspN4I	GGNNCC	2 cut(s)	380, 522
PstI	CTGCAG	1 cut(s)	286
PsuI	RGATCY	1 cut(s)	520
PvuII	CAGCTG	2 cut(s)	385, 572
RsaI	GTAC	1 cut(s)	509
RsaNI	GTAC	1 cut(s)	508
SacI	GAGCTC	3 cut(s)	97, 627, 766
SapI	GCTCTTC	1 cut(s)	396
SaqAI	TTAA	2 cut(s)	105, 431
SatI	GCNGC	3 cut(s)	282, 285, 288
Sau3AI	GATC	3 cut(s)	397, 520, 715
ScrFI	CCNGG	1 cut(s)	17
SduI	GDGCHC	4 cut(s)	97, 439, 627, 766
SfaNI	GCATC	5 cut(s)	162, 175, 570, 700, 793
SfcI	CTRYAG	1 cut(s)	282
Sse9I	AATT	6 cut(s)	106, 112, 160, 181, 404, 755
SsiI	CCGC	1 cut(s)	42
SspMI	CTAG	2 cut(s)	584, 644
SstI	GAGCTC	3 cut(s)	97, 627, 766
StyD4I	CCNGG	1 cut(s)	15
StyI	CCWWGG	1 cut(s)	719
TaaI	ACNGT	2 cut(s)	136, 658
TaqI	TCGA	2 cut(s)	97, 714
TasI	AATT	6 cut(s)	106, 112, 160, 181, 404, 755
TatI	WGTACW	1 cut(s)	507
TfiI	GAWTC	4 cut(s)	45, 154, 443, 587
Tru1I	TTAA	2 cut(s)	105, 431
Tru9I	TTAA	2 cut(s)	105, 431
TseI	GCWGC	3 cut(s)	281, 284, 287
TspDTI	ATGAA	4 cut(s)	77, 438, 612, 689
XapI	RAATTY	2 cut(s)	404, 755
XceI	RCATGY	3 cut(s)	329, 633, 744
XmnI	GAANNNNTTC	1 cut(s)	669
XspI	CTAG	2 cut(s)	584, 644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.