MD07G1201500.v1.1

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Reverse (-)
27959673 .. 27962854
3182 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1201500.v1.1.491

Sequence Viewer

Length: 828 bp
ATGAGTTTTGTATTCCGGGGTTCCAGGGCGGATATCGAAAGTGGATTCCCAGAATTTATACCAGAGCGGCGTGCAATGCGCGTTCATCCACCACGCTCTGTCAATTCCAACTCACTTGCTTTTCTTGTCACAGTTCTTTTGCTGTTCATGATACTGAACTCACACCAGATGTCACCAAATTTTCTGCTCTGGCTAGTTCTTGGTGTCTTTTTGATGGCTACAACATTAAGGATGTATGCAACCTGTCAACAACTTCAAGCTCAAGCACAGGCTCATGTTGCGGCAGCCAGTGGCCTTCTTGGCCATACTGAATTGCGGTTGCATATGCCACCATCGATAGCCCTAGCAACAAGAGGGCGCCTTCAAGGCCTCAGGCTTCAGCTTGCACTTCTTGACCGGGAATTTGATGACCTAGATTATGAAACTTTGCGAGCTCTGGATTCTGATAATGTTCCAGCAGCTTCTTCTATGAGTGAGGAAGAGATAAATGCACTTCCGGTCCATAAATACAAGGTGCCAGGTCCTCAAATTGGTGCTTCATCAATGCAACAAGCTTCATCTTCAGCACCTGCTGAGAAGAAGCAAGAAACTGTCGACACGGTTGGGAGCACAAAAGCAGTGGAAGATGAACTGACTTGTAGCGTTTGCCTGGAGCAAGTTACTGTGGGAGAACTAATCCGCAGCCTTCCATGCTTGCATCAGTTCCATGCTAGTTGCATTGATCCATGGCTGAGGCAGCAGGGAACCTGTCCGGTATGTAAATTCCGAGCAGGATCAGGGTGGCATGAAAATGGAGAAGCTGGAACGGATGCTTCTTACATGGTTTAA

Protein Analysis

276

Amino Acids

30.21

Weight (kDa)

5.84

Isoelectric Point (pI)

60.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 212 - 254 2.1e-13 Ring finger domain
zf-RING_11 PF17123 213 - 240 1.3e-08 RING-like zinc finger
zf-C3HC4_2 PF13923 213 - 253 2.1e-08 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 213 - 253 4.7e-08 Zinc finger, C3HC4 type (RING finger)
zf-rbx1 PF12678 230 - 254 4.7e-07 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 577
Acc36I ACCTGC 1 cut(s) 577
AccB1I GGYRCC 2 cut(s) 357, 514
AccBSI CCGCTC 1 cut(s) 67
AccI GTMKAC 1 cut(s) 594
AccII CGCG 1 cut(s) 81
AciI CCGC 5 cut(s) 29, 67, 281, 316, 679
AclWI GGATC 2 cut(s) 716, 781
AcoI YGGCCR 1 cut(s) 301
AcsI RAATTY 4 cut(s) 53, 178, 401, 761
AcuI CTGAAG 2 cut(s) 362, 546
AcyI GRCGYC 1 cut(s) 358
AfiI CCNNNNNNNGG 1 cut(s) 530
AgsI TTSAA 2 cut(s) 257, 365
AjnI CCWGG 3 cut(s) 23, 517, 648
AluBI AGCT 6 cut(s) 260, 382, 434, 461, 554, 800
AluI AGCT 6 cut(s) 260, 382, 434, 461, 554, 800
Alw21I GWGCWC 2 cut(s) 436, 611
AlwI GGATC 2 cut(s) 716, 781
AlwNI CAGNNNCTG 1 cut(s) 569
AoxI GGCC 3 cut(s) 292, 301, 367
ApeKI GCWGC 4 cut(s) 284, 458, 681, 736
ApoI RAATTY 4 cut(s) 53, 178, 401, 761
ArsI GACNNNNNNTTYG 2 cut(s) 386, 418
AspLEI GCGC 2 cut(s) 81, 360
AspS9I GGNCC 2 cut(s) 499, 521
AsuC2I CCSGG 2 cut(s) 17, 398
AsuHPI GGTGA 1 cut(s) 165
AvaII GGWCC 2 cut(s) 499, 521
AxyI CCTNAGG 1 cut(s) 371
BalI TGGCCA 1 cut(s) 303
BanI GGYRCC 2 cut(s) 357, 514
BanII GRGCYC 1 cut(s) 436
Bbv12I GWGCWC 2 cut(s) 436, 611
BbvCI CCTCAGC 1 cut(s) 731
BbvI GCAGC 4 cut(s) 296, 470, 693, 748
BccI CCATC 2 cut(s) 208, 340
BciT130I CCWGG 3 cut(s) 25, 519, 650
BcnI CCSGG 2 cut(s) 17, 398
BfaI CTAG 4 cut(s) 194, 344, 413, 711
BfoI RGCGCY 1 cut(s) 361
BfuAI ACCTGC 1 cut(s) 577
BglI GCCNNNNNGGC 2 cut(s) 300, 366
BisI GCNGC 6 cut(s) 68, 282, 285, 459, 682, 737
BlsI GCNGC 6 cut(s) 69, 283, 286, 460, 683, 738
Bme1390I CCNGG 5 cut(s) 17, 25, 398, 519, 650
Bme18I GGWCC 2 cut(s) 499, 521
BmgT120I GGNCC 2 cut(s) 499, 521
BmiI GGNNCC 4 cut(s) 22, 359, 516, 745
BmrFI CCNGG 5 cut(s) 17, 25, 398, 519, 650
BmsI GCATC 2 cut(s) 706, 799
BpmI CTGGAG 1 cut(s) 671
Bpu10I CCTNAGC 1 cut(s) 731
BpuEI CTTGAG 1 cut(s) 246
BpuMI CCSGG 2 cut(s) 17, 398
Bsa29I ATCGAT 1 cut(s) 335
BsaHI GRCGYC 1 cut(s) 358
BsaJI CCNNGG 3 cut(s) 16, 24, 725
BsaWI WCCGGW 2 cut(s) 496, 751
Bsc4I CCNNNNNNNGG 1 cut(s) 530
Bse1I ACTGG 1 cut(s) 288
Bse21I CCTNAGG 1 cut(s) 371
Bse3DI GCAATG 1 cut(s) 81
BseBI CCWGG 3 cut(s) 25, 519, 650
BseCI ATCGAT 1 cut(s) 335
BseDI CCNNGG 3 cut(s) 16, 24, 725
BseGI GGATG 3 cut(s) 85, 237, 814
BseLI CCNNNNNNNGG 1 cut(s) 530
BseMI GCAATG 1 cut(s) 81
BseMII CTCAG 3 cut(s) 385, 564, 722
BseNI ACTGG 1 cut(s) 288
BseXI GCAGC 4 cut(s) 296, 470, 693, 748
Bsh1236I CGCG 1 cut(s) 81
BshFI GGCC 3 cut(s) 294, 303, 369
BshNI GGYRCC 2 cut(s) 357, 514
BshVI ATCGAT 1 cut(s) 335
BsiHKAI GWGCWC 2 cut(s) 436, 611
BsiSI CCGG 4 cut(s) 16, 397, 497, 752
BslI CCNNNNNNNGG 1 cut(s) 530
BsnI GGCC 3 cut(s) 294, 303, 369
Bsp1286I GDGCHC 2 cut(s) 436, 611
Bsp143I GATC 2 cut(s) 721, 773
Bsp19I CCATGG 1 cut(s) 725
BspACI CCGC 5 cut(s) 29, 67, 281, 316, 679
BspANI GGCC 3 cut(s) 294, 303, 369
BspCNI CTCAG 3 cut(s) 384, 565, 723
BspDI ATCGAT 1 cut(s) 335
BspFNI CGCG 1 cut(s) 81
BspHI TCATGA 1 cut(s) 147
BspLI GGNNCC 4 cut(s) 22, 359, 516, 745
BspMI ACCTGC 1 cut(s) 577
BspPI GGATC 2 cut(s) 716, 781
BspT107I GGYRCC 2 cut(s) 357, 514
BsrBI CCGCTC 1 cut(s) 67
BsrDI GCAATG 1 cut(s) 81
BsrI ACTGG 1 cut(s) 288
BssECI CCNNGG 3 cut(s) 16, 24, 725
BssMI GATC 2 cut(s) 721, 773
BssNI GRCGYC 1 cut(s) 358
BssT1I CCWWGG 1 cut(s) 725
Bst2UI CCWGG 3 cut(s) 25, 519, 650
Bst4CI ACNGT 4 cut(s) 133, 592, 601, 664
Bst6I CTCTTC 1 cut(s) 474
BstACI GRCGYC 1 cut(s) 358
BstC8I GCNNGC 4 cut(s) 72, 384, 432, 695
BstDEI CTNAG 3 cut(s) 371, 573, 731
BstDSI CCRYGG 1 cut(s) 725
BstF5I GGATG 3 cut(s) 85, 237, 814
BstFNI CGCG 1 cut(s) 81
BstH2I RGCGCY 1 cut(s) 361
BstHHI GCGC 2 cut(s) 81, 360
BstKTI GATC 2 cut(s) 724, 776
BstMBI GATC 2 cut(s) 721, 773
BstMWI GCNNNNNNNGC 6 cut(s) 76, 278, 300, 366, 690, 736
BstNI CCWGG 3 cut(s) 25, 519, 650
BstSCI CCNGG 5 cut(s) 15, 23, 396, 517, 648
BstUI CGCG 1 cut(s) 81
BstV1I GCAGC 4 cut(s) 296, 470, 693, 748
Bsu15I ATCGAT 1 cut(s) 335
Bsu36I CCTNAGG 1 cut(s) 371
BsuRI GGCC 3 cut(s) 294, 303, 369
BsuTUI ATCGAT 1 cut(s) 335
BtgI CCRYGG 1 cut(s) 725
BtsCI GGATG 3 cut(s) 85, 237, 814
BtsI GCAGTG 1 cut(s) 624
BtsIMutI CAGTG 2 cut(s) 295, 624
BveI ACCTGC 1 cut(s) 577
Cac8I GCNNGC 4 cut(s) 72, 384, 432, 695
CaiI CAGNNNCTG 1 cut(s) 569
CciI TCATGA 1 cut(s) 147
CfoI GCGC 2 cut(s) 81, 360
Cfr13I GGNCC 2 cut(s) 499, 521
ClaI ATCGAT 1 cut(s) 335
CspCI CAANNNNNGTGG 2 cut(s) 600, 635
CviAII CATG 7 cut(s) 148, 275, 690, 707, 726, 785, 820
DdeI CTNAG 3 cut(s) 371, 573, 731
DinI GGCGCC 1 cut(s) 359
DpnI GATC 2 cut(s) 723, 775
DpnII GATC 2 cut(s) 721, 773
EaeI YGGCCR 1 cut(s) 301
Eam1104I CTCTTC 1 cut(s) 474
EarI CTCTTC 1 cut(s) 474
EciI GGCGGA 1 cut(s) 44
Ecl136II GAGCTC 1 cut(s) 434
Eco130I CCWWGG 1 cut(s) 725
Eco147I AGGCCT 1 cut(s) 369
Eco24I GRGCYC 1 cut(s) 436
Eco32I GATATC 1 cut(s) 34
Eco47I GGWCC 2 cut(s) 499, 521
Eco53kI GAGCTC 1 cut(s) 434
Eco57I CTGAAG 2 cut(s) 362, 546
Eco81I CCTNAGG 1 cut(s) 371
EcoICRI GAGCTC 1 cut(s) 434
EcoO109I RGGNCCY 1 cut(s) 521
EcoRII CCWGG 3 cut(s) 23, 517, 648
EcoRV GATATC 1 cut(s) 34
EcoT14I CCWWGG 1 cut(s) 725
EcoT38I GRGCYC 1 cut(s) 436
EgeI GGCGCC 1 cut(s) 359
EheI GGCGCC 1 cut(s) 359
ErhI CCWWGG 1 cut(s) 725
FaeI CATG 7 cut(s) 151, 278, 693, 710, 729, 788, 823
FatI CATG 7 cut(s) 147, 274, 689, 706, 725, 784, 819
FauNDI CATATG 1 cut(s) 324
FblI GTMKAC 1 cut(s) 594
Fnu4HI GCNGC 6 cut(s) 68, 282, 285, 459, 682, 737
FokI GGATG 3 cut(s) 72, 244, 821
FriOI GRGCYC 1 cut(s) 436
Fsp4HI GCNGC 6 cut(s) 68, 282, 285, 459, 682, 737
FspBI CTAG 4 cut(s) 194, 344, 413, 711
GlaI GCGC 2 cut(s) 80, 359
GluI GCNGC 6 cut(s) 68, 282, 285, 459, 682, 737
GsuI CTGGAG 1 cut(s) 671
HaeII RGCGCY 1 cut(s) 361
HaeIII GGCC 3 cut(s) 294, 303, 369
HapII CCGG 4 cut(s) 16, 397, 497, 752
HhaI GCGC 2 cut(s) 81, 360
Hin1I GRCGYC 1 cut(s) 358
Hin1II CATG 7 cut(s) 151, 278, 693, 710, 729, 788, 823
Hin6I GCGC 2 cut(s) 79, 358
HinP1I GCGC 2 cut(s) 79, 358
HincII GTYRAC 2 cut(s) 248, 595
HindII GTYRAC 2 cut(s) 248, 595
HindIII AAGCTT 1 cut(s) 552
HinfI GANTC 2 cut(s) 45, 440
HpaII CCGG 4 cut(s) 16, 397, 497, 752
HphI GGTGA 1 cut(s) 165
Hpy166II GTNNAC 2 cut(s) 248, 595
Hpy188I TCNGA 2 cut(s) 445, 767
Hpy188III TCNNGA 3 cut(s) 148, 392, 437
Hpy8I GTNNAC 2 cut(s) 248, 595
HpyAV CCTTC 3 cut(s) 305, 371, 695
HpyCH4III ACNGT 4 cut(s) 133, 592, 601, 664
HpyCH4V TGCA 8 cut(s) 74, 239, 322, 386, 491, 547, 697, 717
HpyF10VI GCNNNNNNNGC 6 cut(s) 76, 278, 300, 366, 690, 736
HpyF3I CTNAG 3 cut(s) 371, 573, 731
Hsp92I GRCGYC 1 cut(s) 358
Hsp92II CATG 7 cut(s) 151, 278, 693, 710, 729, 788, 823
HspAI GCGC 2 cut(s) 79, 358
KasI GGCGCC 1 cut(s) 357
Kzo9I GATC 2 cut(s) 721, 773
LmnI GCTCC 2 cut(s) 606, 652
Lsp1109I GCAGC 4 cut(s) 296, 470, 693, 748
LweI GCATC 2 cut(s) 706, 799
MaeI CTAG 4 cut(s) 194, 344, 413, 711
MaeIII GTNAC 3 cut(s) 127, 171, 658
MalI GATC 2 cut(s) 723, 775
MbiI CCGCTC 1 cut(s) 67
MboI GATC 2 cut(s) 721, 773
MboII GAAGA 5 cut(s) 456, 491, 552, 589, 635
MhlI GDGCHC 2 cut(s) 436, 611
MlsI TGGCCA 1 cut(s) 303
MluCI AATT 7 cut(s) 53, 103, 178, 311, 401, 528, 761
MluNI TGGCCA 1 cut(s) 303
Mly113I GGCGCC 1 cut(s) 358
MmeI TCCRAC 1 cut(s) 132
MnlI CCTC 5 cut(s) 347, 380, 469, 534, 726
Mox20I TGGCCA 1 cut(s) 303
MscI TGGCCA 1 cut(s) 303
MseI TTAA 2 cut(s) 227, 826
MslI CAYNNNNRTG 1 cut(s) 789
Msp20I TGGCCA 1 cut(s) 303
MspI CCGG 4 cut(s) 16, 397, 497, 752
MspR9I CCNGG 5 cut(s) 17, 25, 398, 519, 650
MvaI CCWGG 3 cut(s) 25, 519, 650
MvnI CGCG 1 cut(s) 81
MwoI GCNNNNNNNGC 6 cut(s) 76, 278, 300, 366, 690, 736
NarI GGCGCC 1 cut(s) 358
NciI CCSGG 2 cut(s) 17, 398
NcoI CCATGG 1 cut(s) 725
NdeI CATATG 1 cut(s) 324
NdeII GATC 2 cut(s) 721, 773
NlaIII CATG 7 cut(s) 151, 278, 693, 710, 729, 788, 823
NlaIV GGNNCC 4 cut(s) 22, 359, 516, 745
NmuCI GTSAC 2 cut(s) 127, 171
PagI TCATGA 1 cut(s) 147
PaqCI CACCTGC 1 cut(s) 577
PceI AGGCCT 1 cut(s) 369
PfeI GAWTC 2 cut(s) 45, 440
PkrI GCNGC 6 cut(s) 69, 283, 286, 460, 683, 738
PluTI GGCGCC 1 cut(s) 361
PpuMI RGGWCCY 1 cut(s) 521
Psp124BI GAGCTC 1 cut(s) 436
Psp5II RGGWCCY 1 cut(s) 521
Psp6I CCWGG 3 cut(s) 23, 517, 648
PspGI CCWGG 3 cut(s) 23, 517, 648
PspN4I GGNNCC 4 cut(s) 22, 359, 516, 745
PspPI GGNCC 2 cut(s) 499, 521
PspPPI RGGWCCY 1 cut(s) 521
PstNI CAGNNNCTG 1 cut(s) 569
RseI CAYNNNNRTG 1 cut(s) 789
SacI GAGCTC 1 cut(s) 436
SalI GTCGAC 1 cut(s) 593
SaqAI TTAA 2 cut(s) 227, 826
SatI GCNGC 6 cut(s) 68, 282, 285, 459, 682, 737
Sau3AI GATC 2 cut(s) 721, 773
Sau96I GGNCC 2 cut(s) 499, 521
ScrFI CCNGG 5 cut(s) 17, 25, 398, 519, 650
SduI GDGCHC 2 cut(s) 436, 611
SfaNI GCATC 2 cut(s) 706, 799
SfiI GGCCNNNNNGGCC 1 cut(s) 300
SfoI GGCGCC 1 cut(s) 359
SinI GGWCC 2 cut(s) 499, 521
SmiMI CAYNNNNRTG 1 cut(s) 789
SmlI CTYRAG 1 cut(s) 261
SmoI CTYRAG 1 cut(s) 261
Sse9I AATT 7 cut(s) 53, 103, 178, 311, 401, 528, 761
SseBI AGGCCT 1 cut(s) 369
SsiI CCGC 5 cut(s) 29, 67, 281, 316, 679
SspDI GGCGCC 1 cut(s) 357
SspMI CTAG 4 cut(s) 194, 344, 413, 711
SstI GAGCTC 1 cut(s) 436
StuI AGGCCT 1 cut(s) 369
StyD4I CCNGG 5 cut(s) 15, 23, 396, 517, 648
StyI CCWWGG 1 cut(s) 725
TaaI ACNGT 4 cut(s) 133, 592, 601, 664
TaqI TCGA 3 cut(s) 36, 335, 594
TasI AATT 7 cut(s) 53, 103, 178, 311, 401, 528, 761
TauI GCSGC 2 cut(s) 70, 284
TfiI GAWTC 2 cut(s) 45, 440
Tru1I TTAA 2 cut(s) 227, 826
Tru9I TTAA 2 cut(s) 227, 826
TscAI CASTG 2 cut(s) 295, 624
TseFI GTSAC 2 cut(s) 127, 171
TseI GCWGC 4 cut(s) 284, 458, 681, 736
Tsp45I GTSAC 2 cut(s) 127, 171
TspDTI ATGAA 7 cut(s) 74, 136, 435, 528, 546, 642, 801
TspGWI ACGGA 1 cut(s) 821
TspRI CASTG 2 cut(s) 295, 624
VpaK11BI GGWCC 2 cut(s) 499, 521
XapI RAATTY 4 cut(s) 53, 178, 401, 761
XmiI GTMKAC 1 cut(s) 594
XspI CTAG 4 cut(s) 194, 344, 413, 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.