Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0005097

Physical Location & Seq

Genomic Coordinates Reverse (-)

15503422 .. 15504371

Gene Structure 950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g15720.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGAGTTTTGTGTTCCGGGGCAGCAGAGCGGATATCGAAAGTGGGTTCCCGGAATTCATACCAGGGCGGCGTGCAATGCGTGTTCATCCACCACGCTCTGTCAATTCCAACTCACTTGCTTTTCTTGTCACAGTTCTCTTGCTGTTCATGATACTGAACTCACACCAGATGTCACCGAATTTTCTGCTGTGGCTAGTTCTTGGTGTCTTTTTGATGGCTACAACATTAAGGATGTATGCAACCTGTCAACAACTTCAAGCTCAAGCACAGGCTCATGCAGCGTCAGCCAGTGGCCTTCTTGGCCATACTGAATTGCGGTTGCGTATGCCACCATCAATTAGCTTAGCAACAAGAGGGCGCCTTCAAGGCCTCAGACTTCAGCTTGCACTTCTTGACCGGGAATTTGATGACCTAGGTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010498 GO:0010646 GO:0010647 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0031984 GO:0032446 GO:0033993 GO:0036211 GO:0042175 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:0098827 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

141

Amino Acids

15.68

Weight (kDa)

11.27

Isoelectric Point (pI)

60.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55530
fragaria_vesca	FvH4_7g22830 FvH4_7g22830
malus_domestica	MD01G1136500.v1.1 MD07G1201500.v1.1 MD11G1096300.v1.1
prunus_persica	Prupe.2G238100_v2.0.a1 Prupe.2G238100_v2.0.a1 Prupe.2G238100_v2.0.a1 Prupe.2G238100_v2.0.a1 Prupe.2G238100_v2.0.a1 Prupe.6G071900_v2.0.a1 Prupe.6G071900_v2.0.a1 Prupe.6G071900_v2.0.a1
pyrus_communis	pycom01g15720 pycom07g18850 pycom11g08160
rosa_chinensis	RchiOBHm_Chr1g0367981
rosa_laevigata	RLG00000027249
rosa_multiflora	Rmu_co8208940.1_g000001
rosa_roxburghii	Rroxscaffold_4G00288980
rosa_rugosa	Rorug01G0338200 Rorug01G0338200 Rorug01G0338200 Rorug01G0338300
rosa_samantha	Rh1AG345000 Rh1BG307200 Rh1CG322800 Rh1DG339300
rosa_wichuraiana	Rw1G030700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	357
AccBSI	CCGCTC	1 cut(s)	29
AciI	CCGC	3 cut(s)	29, 67, 316
AcoI	YGGCCR	1 cut(s)	301
AcsI	RAATTY	3 cut(s)	53, 178, 401
AcuI	CTGAAG	1 cut(s)	362
AcyI	GRCGYC	1 cut(s)	358
AgsI	TTSAA	2 cut(s)	257, 365
AjnI	CCWGG	1 cut(s)	61
AluBI	AGCT	3 cut(s)	260, 342, 382
AluI	AGCT	3 cut(s)	260, 342, 382
AoxI	GGCC	3 cut(s)	292, 301, 367
ApeKI	GCWGC	2 cut(s)	21, 278
ApoI	RAATTY	3 cut(s)	53, 178, 401
ArsI	GACNNNNNNTTYG	2 cut(s)	386, 418
AspA2I	CCTAGG	1 cut(s)	412
AspLEI	GCGC	1 cut(s)	360
AsuC2I	CCSGG	3 cut(s)	17, 50, 398
AsuHPI	GGTGA	1 cut(s)	165
AvrII	CCTAGG	1 cut(s)	412
BalI	TGGCCA	1 cut(s)	303
BanI	GGYRCC	1 cut(s)	357
BbvI	GCAGC	2 cut(s)	33, 290
BccI	CCATC	2 cut(s)	208, 340
BcgI	CGANNNNNNTGC	2 cut(s)	166, 200
BciT130I	CCWGG	1 cut(s)	63
BcnI	CCSGG	3 cut(s)	17, 50, 398
BfaI	CTAG	2 cut(s)	194, 413
BfoI	RGCGCY	1 cut(s)	361
BglI	GCCNNNNNGGC	2 cut(s)	300, 366
BisI	GCNGC	3 cut(s)	22, 68, 279
BlnI	CCTAGG	1 cut(s)	412
BlpI	GCTNAGC	1 cut(s)	343
BlsI	GCNGC	3 cut(s)	23, 69, 280
Bme1390I	CCNGG	4 cut(s)	17, 50, 63, 398
BmiI	GGNNCC	2 cut(s)	47, 359
BmrFI	CCNGG	4 cut(s)	17, 50, 63, 398
Bpu1102I	GCTNAGC	1 cut(s)	343
BpuEI	CTTGAG	1 cut(s)	246
BpuMI	CCSGG	3 cut(s)	17, 50, 398
BsaHI	GRCGYC	1 cut(s)	358
BsaJI	CCNNGG	3 cut(s)	16, 62, 412
Bse1I	ACTGG	1 cut(s)	288
Bse3DI	GCAATG	1 cut(s)	81
BseBI	CCWGG	1 cut(s)	63
BseDI	CCNNGG	3 cut(s)	16, 62, 412
BseGI	GGATG	2 cut(s)	85, 237
BseMI	GCAATG	1 cut(s)	81
BseMII	CTCAG	1 cut(s)	385
BseNI	ACTGG	1 cut(s)	288
BseXI	GCAGC	2 cut(s)	33, 290
BshFI	GGCC	3 cut(s)	294, 303, 369
BshNI	GGYRCC	1 cut(s)	357
BsiSI	CCGG	3 cut(s)	16, 50, 397
BsnI	GGCC	3 cut(s)	294, 303, 369
Bsp1720I	GCTNAGC	1 cut(s)	343
BspACI	CCGC	3 cut(s)	29, 67, 316
BspANI	GGCC	3 cut(s)	294, 303, 369
BspCNI	CTCAG	1 cut(s)	384
BspHI	TCATGA	1 cut(s)	147
BspLI	GGNNCC	2 cut(s)	47, 359
BspT107I	GGYRCC	1 cut(s)	357
BsrBI	CCGCTC	1 cut(s)	29
BsrDI	GCAATG	1 cut(s)	81
BsrI	ACTGG	1 cut(s)	288
BssECI	CCNNGG	3 cut(s)	16, 62, 412
BssNI	GRCGYC	1 cut(s)	358
BssT1I	CCWWGG	1 cut(s)	412
Bst2UI	CCWGG	1 cut(s)	63
Bst4CI	ACNGT	1 cut(s)	133
BstACI	GRCGYC	1 cut(s)	358
BstC8I	GCNNGC	2 cut(s)	72, 384
BstDEI	CTNAG	2 cut(s)	343, 371
BstF5I	GGATG	2 cut(s)	85, 237
BstH2I	RGCGCY	1 cut(s)	361
BstHHI	GCGC	1 cut(s)	360
BstMWI	GCNNNNNNNGC	5 cut(s)	76, 278, 284, 300, 366
BstNI	CCWGG	1 cut(s)	63
BstSCI	CCNGG	4 cut(s)	15, 48, 61, 396
BstV1I	GCAGC	2 cut(s)	33, 290
BsuRI	GGCC	3 cut(s)	294, 303, 369
BtsCI	GGATG	2 cut(s)	85, 237
BtsIMutI	CAGTG	1 cut(s)	295
Cac8I	GCNNGC	2 cut(s)	72, 384
CciI	TCATGA	1 cut(s)	147
CfoI	GCGC	1 cut(s)	360
CseI	GACGC	1 cut(s)	270
CviAII	CATG	2 cut(s)	148, 275
DdeI	CTNAG	2 cut(s)	343, 371
DinI	GGCGCC	1 cut(s)	359
EaeI	YGGCCR	1 cut(s)	301
Eco130I	CCWWGG	1 cut(s)	412
Eco147I	AGGCCT	1 cut(s)	369
Eco32I	GATATC	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	362
EcoRI	GAATTC	1 cut(s)	53
EcoRII	CCWGG	1 cut(s)	61
EcoRV	GATATC	1 cut(s)	34
EcoT14I	CCWWGG	1 cut(s)	412
EgeI	GGCGCC	1 cut(s)	359
EheI	GGCGCC	1 cut(s)	359
ErhI	CCWWGG	1 cut(s)	412
FaeI	CATG	2 cut(s)	151, 278
FaiI	YATR	6 cut(s)	59, 149, 237, 276, 306, 326
FatI	CATG	2 cut(s)	147, 274
Fnu4HI	GCNGC	3 cut(s)	22, 68, 279
FokI	GGATG	2 cut(s)	72, 244
Fsp4HI	GCNGC	3 cut(s)	22, 68, 279
FspBI	CTAG	2 cut(s)	194, 413
GlaI	GCGC	1 cut(s)	359
GluI	GCNGC	3 cut(s)	22, 68, 279
HaeII	RGCGCY	1 cut(s)	361
HaeIII	GGCC	3 cut(s)	294, 303, 369
HapII	CCGG	3 cut(s)	16, 50, 397
HgaI	GACGC	1 cut(s)	270
HhaI	GCGC	1 cut(s)	360
Hin1I	GRCGYC	1 cut(s)	358
Hin1II	CATG	2 cut(s)	151, 278
Hin6I	GCGC	1 cut(s)	358
HinP1I	GCGC	1 cut(s)	358
HincII	GTYRAC	1 cut(s)	248
HindII	GTYRAC	1 cut(s)	248
HpaII	CCGG	3 cut(s)	16, 50, 397
HphI	GGTGA	1 cut(s)	165
Hpy166II	GTNNAC	1 cut(s)	248
Hpy188I	TCNGA	1 cut(s)	374
Hpy188III	TCNNGA	2 cut(s)	148, 392
Hpy8I	GTNNAC	1 cut(s)	248
HpyAV	CCTTC	2 cut(s)	305, 371
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4V	TGCA	4 cut(s)	74, 239, 278, 386
HpyF10VI	GCNNNNNNNGC	5 cut(s)	76, 278, 284, 300, 366
HpyF3I	CTNAG	2 cut(s)	343, 371
Hsp92I	GRCGYC	1 cut(s)	358
Hsp92II	CATG	2 cut(s)	151, 278
HspAI	GCGC	1 cut(s)	358
KasI	GGCGCC	1 cut(s)	357
LpnPI	CCDG	9 cut(s)	29, 48, 63, 75, 179, 254, 256, 301, 410
Lsp1109I	GCAGC	2 cut(s)	33, 290
MaeI	CTAG	2 cut(s)	194, 413
MaeIII	GTNAC	2 cut(s)	127, 171
MbiI	CCGCTC	1 cut(s)	29
MlsI	TGGCCA	1 cut(s)	303
MluCI	AATT	6 cut(s)	53, 103, 178, 311, 336, 401
MluNI	TGGCCA	1 cut(s)	303
Mly113I	GGCGCC	1 cut(s)	358
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	2 cut(s)	347, 380
Mox20I	TGGCCA	1 cut(s)	303
MscI	TGGCCA	1 cut(s)	303
MseI	TTAA	1 cut(s)	227
Msp20I	TGGCCA	1 cut(s)	303
MspI	CCGG	3 cut(s)	16, 50, 397
MspR9I	CCNGG	4 cut(s)	17, 50, 63, 398
MvaI	CCWGG	1 cut(s)	63
MwoI	GCNNNNNNNGC	5 cut(s)	76, 278, 284, 300, 366
NarI	GGCGCC	1 cut(s)	358
NciI	CCSGG	3 cut(s)	17, 50, 398
NlaIII	CATG	2 cut(s)	151, 278
NlaIV	GGNNCC	2 cut(s)	47, 359
NmuCI	GTSAC	2 cut(s)	127, 171
PagI	TCATGA	1 cut(s)	147
PceI	AGGCCT	1 cut(s)	369
PfoI	TCCNGGA	1 cut(s)	48
PkrI	GCNGC	3 cut(s)	23, 69, 280
PluTI	GGCGCC	1 cut(s)	361
Psp6I	CCWGG	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	61
PspN4I	GGNNCC	2 cut(s)	47, 359
SaqAI	TTAA	1 cut(s)	227
SatI	GCNGC	3 cut(s)	22, 68, 279
ScrFI	CCNGG	4 cut(s)	17, 50, 63, 398
SetI	ASST	6 cut(s)	245, 262, 344, 384, 414, 418
SfiI	GGCCNNNNNGGCC	1 cut(s)	300
SfoI	GGCGCC	1 cut(s)	359
SmlI	CTYRAG	1 cut(s)	261
SmoI	CTYRAG	1 cut(s)	261
Sse9I	AATT	6 cut(s)	53, 103, 178, 311, 336, 401
SseBI	AGGCCT	1 cut(s)	369
SsiI	CCGC	3 cut(s)	29, 67, 316
SspDI	GGCGCC	1 cut(s)	357
SspMI	CTAG	2 cut(s)	194, 413
StuI	AGGCCT	1 cut(s)	369
StyD4I	CCNGG	4 cut(s)	15, 48, 61, 396
StyI	CCWWGG	1 cut(s)	412
TaaI	ACNGT	1 cut(s)	133
TaqI	TCGA	1 cut(s)	36
TasI	AATT	6 cut(s)	53, 103, 178, 311, 336, 401
TauI	GCSGC	1 cut(s)	70
Tru1I	TTAA	1 cut(s)	227
Tru9I	TTAA	1 cut(s)	227
TscAI	CASTG	1 cut(s)	295
TseFI	GTSAC	2 cut(s)	127, 171
TseI	GCWGC	2 cut(s)	21, 278
Tsp45I	GTSAC	2 cut(s)	127, 171
TspDTI	ATGAA	3 cut(s)	46, 74, 136
TspRI	CASTG	1 cut(s)	295
XapI	RAATTY	3 cut(s)	53, 178, 401
XmaJI	CCTAGG	1 cut(s)	412
XspI	CTAG	2 cut(s)	194, 413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.