Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0005097

Physical Location & Seq

Genomic Coordinates Reverse (-)

25880564 .. 25884776

Gene Structure 4213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G238100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGAGTTTTGTTTTCCGGGGGACAAGAGCAGATATTGAAAGTGGATTCCCGGAATTTATACCAGAGCGGCGTGCAATGCGCGTTCATGCATCACGTTCTGTCAATTCCAACTCACTTGCTTTTCTTGTCACAGTTCTTTTGTTATTCATGATACTGAACTCGCACCAGATGTCACCTAATTTCCTGCTCTGGCTAGTTCTTGGCGTCTTTTTGATGGCCACAACGTTAAGGATGTACGCAACCTGTCAACAACTTCAAGCTCAAGCACAGGCTCATGCAGCGGCAGCCAGCGGCCTTCTTGGTCATACTGAATTGCGGTTGCATGTGCCACCATCCATAGCCCTAGCAACAAGAGGGCGCCTTCAAGGCCTCAGACTTCAGCTTGCACTTCTTGATCGGGAATTTGATGACCTAGATTATGAAACTTTGCGAGCTTTGGATTCTGATAATGTTCCAGCAGCTTCTTCTATGAGTGAGGAAGAGATAAATGCTCTTCCAGTCCATAAATACAAGGTTATGGGTCTTCAGACTGGTGCTTCATCGATTCAACAAGCTTCATCTTCAGTACCCTCTGAGCAGAAGAAGCAAGAAACTGCTAACACAGTTGGGAGCACAAAAGCCTCAGAAGATGAACTGACTTGCAGTGTTTGCTTGGAGCAAGTTAACGTGGGAGAACTAATCCGCAGCCTTCCTTGCATGCATCAGTTCCATGCTAGTTGCATAGATCCTTGGCTGAGGCAACAGGGAACCTGCCCAGTGTGTAAATTCAGAGCAGGATCGGTGGCGTGGCATGAAAATAGCCAAGGTGGAATGGATCCTTCGTACATGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010498 GO:0010646 GO:0010647 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0031984 GO:0032446 GO:0033993 GO:0036211 GO:0042175 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:0098827 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

278

Amino Acids

30.5

Weight (kDa)

6.13

Isoelectric Point (pI)

66.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55530
fragaria_vesca	FvH4_7g22830 FvH4_7g22830
malus_domestica	MD01G1136500.v1.1 MD07G1201500.v1.1 MD11G1096300.v1.1
prunus_persica	Prupe.2G238100_v2.0.a1 Prupe.2G238100_v2.0.a1 Prupe.2G238100_v2.0.a1 Prupe.2G238100_v2.0.a1 Prupe.2G238100_v2.0.a1 Prupe.6G071900_v2.0.a1 Prupe.6G071900_v2.0.a1 Prupe.6G071900_v2.0.a1
pyrus_communis	pycom01g15720 pycom07g18850 pycom11g08160
rosa_chinensis	RchiOBHm_Chr1g0367981
rosa_laevigata	RLG00000027249
rosa_multiflora	Rmu_co8208940.1_g000001
rosa_roxburghii	Rroxscaffold_4G00288980
rosa_rugosa	Rorug01G0338200 Rorug01G0338200 Rorug01G0338200 Rorug01G0338300
rosa_samantha	Rh1AG345000 Rh1BG307200 Rh1CG322800 Rh1DG339300
rosa_wichuraiana	Rw1G030700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	758
AccB1I	GGYRCC	1 cut(s)	357
AccBSI	CCGCTC	1 cut(s)	67
AccII	CGCG	1 cut(s)	81
AciI	CCGC	5 cut(s)	67, 281, 291, 316, 682
AclI	AACGTT	1 cut(s)	224
AclWI	GGATC	4 cut(s)	719, 784, 809, 822
AcoI	YGGCCR	1 cut(s)	216
AcsI	RAATTY	3 cut(s)	53, 401, 764
AcuI	CTGAAG	3 cut(s)	362, 509, 546
AcyI	GRCGYC	2 cut(s)	204, 358
AfaI	GTAC	3 cut(s)	236, 567, 824
AgsI	TTSAA	4 cut(s)	38, 257, 365, 548
AluBI	AGCT	5 cut(s)	260, 382, 434, 461, 554
AluI	AGCT	5 cut(s)	260, 382, 434, 461, 554
Alw21I	GWGCWC	1 cut(s)	614
AlwI	GGATC	4 cut(s)	719, 784, 809, 822
AoxI	GGCC	3 cut(s)	216, 292, 367
ApeKI	GCWGC	4 cut(s)	278, 284, 458, 684
ApoI	RAATTY	3 cut(s)	53, 401, 764
AspLEI	GCGC	2 cut(s)	81, 360
AsuC2I	CCSGG	2 cut(s)	17, 50
AsuHPI	GGTGA	1 cut(s)	165
BalI	TGGCCA	1 cut(s)	218
BamHI	GGATCC	1 cut(s)	814
BanI	GGYRCC	1 cut(s)	357
BbsI	GAAGAC	1 cut(s)	515
Bbv12I	GWGCWC	1 cut(s)	614
BbvCI	CCTCAGC	1 cut(s)	734
BbvI	GCAGC	4 cut(s)	290, 296, 470, 696
BccI	CCATC	2 cut(s)	208, 340
BcnI	CCSGG	2 cut(s)	17, 50
BfaI	CTAG	4 cut(s)	194, 344, 413, 714
BfoI	RGCGCY	1 cut(s)	361
BfuAI	ACCTGC	1 cut(s)	758
BglI	GCCNNNNNGGC	1 cut(s)	366
BisI	GCNGC	7 cut(s)	68, 279, 282, 285, 292, 459, 685
BlsI	GCNGC	7 cut(s)	69, 280, 283, 286, 293, 460, 686
Bme1390I	CCNGG	2 cut(s)	17, 50
BmiI	GGNNCC	3 cut(s)	359, 748, 816
BmrFI	CCNGG	2 cut(s)	17, 50
BmrI	ACTGGG	1 cut(s)	749
BmsI	GCATC	2 cut(s)	98, 709
BmuI	ACTGGG	1 cut(s)	749
BpiI	GAAGAC	1 cut(s)	515
Bpu10I	CCTNAGC	1 cut(s)	734
BpuEI	CTTGAG	1 cut(s)	246
BpuMI	CCSGG	2 cut(s)	17, 50
Bsa29I	ATCGAT	1 cut(s)	542
BsaHI	GRCGYC	2 cut(s)	204, 358
BsaJI	CCNNGG	3 cut(s)	16, 728, 802
Bse1I	ACTGG	3 cut(s)	497, 535, 755
Bse3DI	GCAATG	1 cut(s)	81
BseCI	ATCGAT	1 cut(s)	542
BseDI	CCNNGG	3 cut(s)	16, 728, 802
BseGI	GGATG	2 cut(s)	237, 332
BseMI	GCAATG	1 cut(s)	81
BseMII	CTCAG	4 cut(s)	385, 564, 636, 725
BseNI	ACTGG	3 cut(s)	497, 535, 755
BseXI	GCAGC	4 cut(s)	290, 296, 470, 696
Bsh1236I	CGCG	1 cut(s)	81
BshFI	GGCC	3 cut(s)	218, 294, 369
BshNI	GGYRCC	1 cut(s)	357
BshVI	ATCGAT	1 cut(s)	542
BsiHKAI	GWGCWC	1 cut(s)	614
BsiSI	CCGG	2 cut(s)	16, 50
BslFI	GGGAC	1 cut(s)	34
BsmFI	GGGAC	1 cut(s)	34
BsnI	GGCC	3 cut(s)	218, 294, 369
Bsp1286I	GDGCHC	1 cut(s)	614
Bsp143I	GATC	4 cut(s)	394, 724, 776, 814
BspACI	CCGC	5 cut(s)	67, 281, 291, 316, 682
BspANI	GGCC	3 cut(s)	218, 294, 369
BspCNI	CTCAG	4 cut(s)	384, 565, 635, 726
BspDI	ATCGAT	1 cut(s)	542
BspFNI	CGCG	1 cut(s)	81
BspHI	TCATGA	1 cut(s)	147
BspLI	GGNNCC	3 cut(s)	359, 748, 816
BspMI	ACCTGC	1 cut(s)	758
BspPI	GGATC	4 cut(s)	719, 784, 809, 822
BspQI	GCTCTTC	1 cut(s)	498
BspT107I	GGYRCC	1 cut(s)	357
BsrBI	CCGCTC	1 cut(s)	67
BsrDI	GCAATG	1 cut(s)	81
BsrI	ACTGG	3 cut(s)	497, 535, 755
BssECI	CCNNGG	3 cut(s)	16, 728, 802
BssMI	GATC	4 cut(s)	394, 724, 776, 814
BssNI	GRCGYC	2 cut(s)	204, 358
BssT1I	CCWWGG	2 cut(s)	728, 802
Bst4CI	ACNGT	2 cut(s)	133, 604
Bst6I	CTCTTC	2 cut(s)	474, 498
BstACI	GRCGYC	2 cut(s)	204, 358
BstAPI	GCANNNNNTGC	1 cut(s)	648
BstC8I	GCNNGC	5 cut(s)	72, 289, 384, 432, 698
BstDEI	CTNAG	4 cut(s)	371, 573, 622, 734
BstF5I	GGATG	2 cut(s)	237, 332
BstFNI	CGCG	1 cut(s)	81
BstH2I	RGCGCY	1 cut(s)	361
BstHHI	GCGC	2 cut(s)	81, 360
BstKTI	GATC	4 cut(s)	397, 727, 779, 817
BstMBI	GATC	4 cut(s)	394, 724, 776, 814
BstMWI	GCNNNNNNNGC	7 cut(s)	76, 278, 284, 366, 583, 648, 693
BstNSI	RCATGY	2 cut(s)	326, 700
BstSCI	CCNGG	2 cut(s)	15, 48
BstUI	CGCG	1 cut(s)	81
BstV1I	GCAGC	4 cut(s)	290, 296, 470, 696
BstV2I	GAAGAC	1 cut(s)	515
BstX2I	RGATCY	2 cut(s)	724, 814
BstYI	RGATCY	2 cut(s)	724, 814
Bsu15I	ATCGAT	1 cut(s)	542
BsuRI	GGCC	3 cut(s)	218, 294, 369
BsuTUI	ATCGAT	1 cut(s)	542
BtsCI	GGATG	2 cut(s)	237, 332
BtsI	GCAGTG	1 cut(s)	649
BtsIMutI	CAGTG	2 cut(s)	649, 762
BveI	ACCTGC	1 cut(s)	758
Cac8I	GCNNGC	5 cut(s)	72, 289, 384, 432, 698
CciI	TCATGA	1 cut(s)	147
CfoI	GCGC	2 cut(s)	81, 360
ClaI	ATCGAT	1 cut(s)	542
CseI	GACGC	1 cut(s)	193
Csp6I	GTAC	3 cut(s)	235, 566, 823
CviAII	CATG	8 cut(s)	86, 148, 275, 323, 697, 710, 791, 826
CviQI	GTAC	3 cut(s)	235, 566, 823
DdeI	CTNAG	4 cut(s)	371, 573, 622, 734
DinI	GGCGCC	1 cut(s)	359
DpnI	GATC	4 cut(s)	396, 726, 778, 816
DpnII	GATC	4 cut(s)	394, 724, 776, 814
EaeI	YGGCCR	1 cut(s)	216
Eam1104I	CTCTTC	2 cut(s)	474, 498
EarI	CTCTTC	2 cut(s)	474, 498
Eco130I	CCWWGG	2 cut(s)	728, 802
Eco147I	AGGCCT	1 cut(s)	369
Eco57I	CTGAAG	3 cut(s)	362, 509, 546
EcoT14I	CCWWGG	2 cut(s)	728, 802
EcoT22I	ATGCAT	2 cut(s)	91, 702
EgeI	GGCGCC	1 cut(s)	359
EheI	GGCGCC	1 cut(s)	359
ErhI	CCWWGG	2 cut(s)	728, 802
FaeI	CATG	8 cut(s)	89, 151, 278, 326, 700, 713, 794, 829
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	8 cut(s)	85, 147, 274, 322, 696, 709, 790, 825
Fnu4HI	GCNGC	7 cut(s)	68, 279, 282, 285, 292, 459, 685
FokI	GGATG	2 cut(s)	244, 319
Fsp4HI	GCNGC	7 cut(s)	68, 279, 282, 285, 292, 459, 685
FspBI	CTAG	4 cut(s)	194, 344, 413, 714
GlaI	GCGC	2 cut(s)	80, 359
GluI	GCNGC	7 cut(s)	68, 279, 282, 285, 292, 459, 685
HaeII	RGCGCY	1 cut(s)	361
HaeIII	GGCC	3 cut(s)	218, 294, 369
HapII	CCGG	2 cut(s)	16, 50
HgaI	GACGC	1 cut(s)	193
HhaI	GCGC	2 cut(s)	81, 360
Hin1I	GRCGYC	2 cut(s)	204, 358
Hin1II	CATG	8 cut(s)	89, 151, 278, 326, 700, 713, 794, 829
Hin6I	GCGC	2 cut(s)	79, 358
HinP1I	GCGC	2 cut(s)	79, 358
HincII	GTYRAC	2 cut(s)	248, 664
HindII	GTYRAC	2 cut(s)	248, 664
HindIII	AAGCTT	1 cut(s)	552
HinfI	GANTC	3 cut(s)	45, 440, 544
HpaI	GTTAAC	1 cut(s)	664
HpaII	CCGG	2 cut(s)	16, 50
HphI	GGTGA	1 cut(s)	165
Hpy166II	GTNNAC	2 cut(s)	248, 664
Hpy188I	TCNGA	6 cut(s)	374, 445, 528, 574, 625, 770
Hpy188III	TCNNGA	3 cut(s)	148, 392, 398
Hpy8I	GTNNAC	2 cut(s)	248, 664
HpyAV	CCTTC	4 cut(s)	305, 371, 698, 828
HpyCH4III	ACNGT	2 cut(s)	133, 604
HpyCH4IV	ACGT	3 cut(s)	94, 224, 666
HpyCH4V	TGCA	9 cut(s)	74, 89, 278, 322, 386, 642, 696, 700, 720
HpyF10VI	GCNNNNNNNGC	7 cut(s)	76, 278, 284, 366, 583, 648, 693
HpyF3I	CTNAG	4 cut(s)	371, 573, 622, 734
HpySE526I	ACGT	3 cut(s)	94, 224, 666
Hsp92I	GRCGYC	2 cut(s)	204, 358
Hsp92II	CATG	8 cut(s)	89, 151, 278, 326, 700, 713, 794, 829
HspAI	GCGC	2 cut(s)	79, 358
KasI	GGCGCC	1 cut(s)	357
KspAI	GTTAAC	1 cut(s)	664
Kzo9I	GATC	4 cut(s)	394, 724, 776, 814
LguI	GCTCTTC	1 cut(s)	498
LmnI	GCTCC	2 cut(s)	609, 655
Lsp1109I	GCAGC	4 cut(s)	290, 296, 470, 696
LweI	GCATC	2 cut(s)	98, 709
MaeI	CTAG	4 cut(s)	194, 344, 413, 714
MaeII	ACGT	3 cut(s)	94, 224, 666
MaeIII	GTNAC	2 cut(s)	127, 171
MalI	GATC	4 cut(s)	396, 726, 778, 816
MbiI	CCGCTC	1 cut(s)	67
MboI	GATC	4 cut(s)	394, 724, 776, 814
MboII	GAAGA	7 cut(s)	456, 485, 491, 515, 552, 592, 638
MflI	RGATCY	2 cut(s)	724, 814
MhlI	GDGCHC	1 cut(s)	614
MlsI	TGGCCA	1 cut(s)	218
MluCI	AATT	6 cut(s)	53, 103, 178, 311, 401, 764
MluNI	TGGCCA	1 cut(s)	218
Mly113I	GGCGCC	1 cut(s)	358
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	6 cut(s)	347, 380, 469, 580, 631, 729
Mox20I	TGGCCA	1 cut(s)	218
Mph1103I	ATGCAT	2 cut(s)	91, 702
MscI	TGGCCA	1 cut(s)	218
MseI	TTAA	2 cut(s)	227, 663
Msp20I	TGGCCA	1 cut(s)	218
MspA1I	CMGCKG	2 cut(s)	281, 291
MspI	CCGG	2 cut(s)	16, 50
MspR9I	CCNGG	2 cut(s)	17, 50
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	7 cut(s)	76, 278, 284, 366, 583, 648, 693
NarI	GGCGCC	1 cut(s)	358
NciI	CCSGG	2 cut(s)	17, 50
NdeII	GATC	4 cut(s)	394, 724, 776, 814
NlaIII	CATG	8 cut(s)	89, 151, 278, 326, 700, 713, 794, 829
NlaIV	GGNNCC	3 cut(s)	359, 748, 816
NmuCI	GTSAC	2 cut(s)	127, 171
NsiI	ATGCAT	2 cut(s)	91, 702
NspI	RCATGY	2 cut(s)	326, 700
PaeI	GCATGC	1 cut(s)	700
PagI	TCATGA	1 cut(s)	147
PceI	AGGCCT	1 cut(s)	369
PciSI	GCTCTTC	1 cut(s)	498
PfeI	GAWTC	3 cut(s)	45, 440, 544
PfoI	TCCNGGA	1 cut(s)	48
PkrI	GCNGC	7 cut(s)	69, 280, 283, 286, 293, 460, 686
PluTI	GGCGCC	1 cut(s)	361
Psp1406I	AACGTT	1 cut(s)	224
PspN4I	GGNNCC	3 cut(s)	359, 748, 816
PsuI	RGATCY	2 cut(s)	724, 814
RsaI	GTAC	3 cut(s)	236, 567, 824
RsaNI	GTAC	3 cut(s)	235, 566, 823
SapI	GCTCTTC	1 cut(s)	498
SaqAI	TTAA	2 cut(s)	227, 663
SatI	GCNGC	7 cut(s)	68, 279, 282, 285, 292, 459, 685
Sau3AI	GATC	4 cut(s)	394, 724, 776, 814
ScrFI	CCNGG	2 cut(s)	17, 50
SduI	GDGCHC	1 cut(s)	614
SfaNI	GCATC	2 cut(s)	98, 709
SfoI	GGCGCC	1 cut(s)	359
SmlI	CTYRAG	1 cut(s)	261
SmoI	CTYRAG	1 cut(s)	261
SphI	GCATGC	1 cut(s)	700
Sse9I	AATT	6 cut(s)	53, 103, 178, 311, 401, 764
SseBI	AGGCCT	1 cut(s)	369
SsiI	CCGC	5 cut(s)	67, 281, 291, 316, 682
SspDI	GGCGCC	1 cut(s)	357
SspMI	CTAG	4 cut(s)	194, 344, 413, 714
StuI	AGGCCT	1 cut(s)	369
StyD4I	CCNGG	2 cut(s)	15, 48
StyI	CCWWGG	2 cut(s)	728, 802
TaaI	ACNGT	2 cut(s)	133, 604
TaiI	ACGT	3 cut(s)	97, 227, 669
TaqI	TCGA	1 cut(s)	542
TasI	AATT	6 cut(s)	53, 103, 178, 311, 401, 764
TauI	GCSGC	3 cut(s)	70, 284, 294
TfiI	GAWTC	3 cut(s)	45, 440, 544
Tru1I	TTAA	2 cut(s)	227, 663
Tru9I	TTAA	2 cut(s)	227, 663
TscAI	CASTG	2 cut(s)	649, 762
TseFI	GTSAC	2 cut(s)	127, 171
TseI	GCWGC	4 cut(s)	278, 284, 458, 684
Tsp45I	GTSAC	2 cut(s)	127, 171
TspDTI	ATGAA	7 cut(s)	74, 136, 435, 528, 546, 645, 807
TspRI	CASTG	2 cut(s)	649, 762
XapI	RAATTY	3 cut(s)	53, 401, 764
XceI	RCATGY	2 cut(s)	326, 700
XspI	CTAG	4 cut(s)	194, 344, 413, 714
Zsp2I	ATGCAT	2 cut(s)	91, 702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.